Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10155 and HMPREF1078_RS10160 are separated by 212 nucleotides HMPREF1078_RS10160 and HMPREF1078_RS10165 are separated by 56 nucleotides
HMPREF1078_RS10155: HMPREF1078_RS10155 - DUF5106 domain-containing protein, at 656,151 to 657,071
_RS10155
HMPREF1078_RS10160: HMPREF1078_RS10160 - OmpA family protein, at 657,284 to 659,272
_RS10160
HMPREF1078_RS10165: HMPREF1078_RS10165 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 659,329 to 660,549
_RS10165
Position (kb) 657
658
659
660 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 656.315 kb on + strand, within HMPREF1078_RS10155 at 656.315 kb on + strand, within HMPREF1078_RS10155 at 656.315 kb on + strand, within HMPREF1078_RS10155 at 656.315 kb on + strand, within HMPREF1078_RS10155 at 656.317 kb on + strand, within HMPREF1078_RS10155 at 656.317 kb on + strand, within HMPREF1078_RS10155 at 656.317 kb on + strand, within HMPREF1078_RS10155 at 656.318 kb on - strand, within HMPREF1078_RS10155 at 656.318 kb on - strand, within HMPREF1078_RS10155 at 656.385 kb on - strand, within HMPREF1078_RS10155 at 656.385 kb on - strand, within HMPREF1078_RS10155 at 656.464 kb on + strand, within HMPREF1078_RS10155 at 656.495 kb on + strand, within HMPREF1078_RS10155 at 656.496 kb on - strand, within HMPREF1078_RS10155 at 656.502 kb on - strand, within HMPREF1078_RS10155 at 656.534 kb on - strand, within HMPREF1078_RS10155 at 656.534 kb on - strand, within HMPREF1078_RS10155 at 656.546 kb on + strand, within HMPREF1078_RS10155 at 656.602 kb on - strand, within HMPREF1078_RS10155 at 656.638 kb on - strand, within HMPREF1078_RS10155 at 656.649 kb on + strand, within HMPREF1078_RS10155 at 656.649 kb on + strand, within HMPREF1078_RS10155 at 656.650 kb on - strand, within HMPREF1078_RS10155 at 656.653 kb on + strand, within HMPREF1078_RS10155 at 656.654 kb on - strand, within HMPREF1078_RS10155 at 656.654 kb on - strand, within HMPREF1078_RS10155 at 656.657 kb on + strand, within HMPREF1078_RS10155 at 656.696 kb on - strand, within HMPREF1078_RS10155 at 656.701 kb on + strand, within HMPREF1078_RS10155 at 656.756 kb on + strand, within HMPREF1078_RS10155 at 656.775 kb on - strand, within HMPREF1078_RS10155 at 656.803 kb on + strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.804 kb on - strand, within HMPREF1078_RS10155 at 656.814 kb on - strand, within HMPREF1078_RS10155 at 656.821 kb on + strand, within HMPREF1078_RS10155 at 656.871 kb on - strand, within HMPREF1078_RS10155 at 656.904 kb on + strand, within HMPREF1078_RS10155 at 656.911 kb on + strand, within HMPREF1078_RS10155 at 657.036 kb on + strand at 657.037 kb on - strand at 657.052 kb on + strand at 657.053 kb on - strand at 657.057 kb on + strand at 657.071 kb on + strand at 657.074 kb on + strand at 657.075 kb on - strand at 657.075 kb on - strand at 657.075 kb on - strand at 657.075 kb on - strand at 657.100 kb on - strand at 657.137 kb on - strand at 657.141 kb on - strand at 657.141 kb on - strand at 657.149 kb on + strand at 657.221 kb on - strand at 657.228 kb on + strand at 657.235 kb on + strand at 657.236 kb on - strand at 657.254 kb on + strand at 657.255 kb on - strand at 657.281 kb on - strand at 657.297 kb on + strand at 657.336 kb on - strand at 657.336 kb on - strand at 657.420 kb on + strand at 657.439 kb on + strand at 657.517 kb on - strand, within HMPREF1078_RS10160 at 657.586 kb on + strand, within HMPREF1078_RS10160 at 657.596 kb on + strand, within HMPREF1078_RS10160 at 657.721 kb on + strand, within HMPREF1078_RS10160 at 657.751 kb on + strand, within HMPREF1078_RS10160 at 657.751 kb on + strand, within HMPREF1078_RS10160 at 657.751 kb on + strand, within HMPREF1078_RS10160 at 657.752 kb on - strand, within HMPREF1078_RS10160 at 657.752 kb on - strand, within HMPREF1078_RS10160 at 657.752 kb on - strand, within HMPREF1078_RS10160 at 657.752 kb on - strand, within HMPREF1078_RS10160 at 657.753 kb on + strand, within HMPREF1078_RS10160 at 657.753 kb on + strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.754 kb on - strand, within HMPREF1078_RS10160 at 657.807 kb on + strand, within HMPREF1078_RS10160 at 657.808 kb on - strand, within HMPREF1078_RS10160 at 657.834 kb on + strand, within HMPREF1078_RS10160 at 657.835 kb on - strand, within HMPREF1078_RS10160 at 657.864 kb on + strand, within HMPREF1078_RS10160 at 657.869 kb on - strand, within HMPREF1078_RS10160 at 657.967 kb on + strand, within HMPREF1078_RS10160 at 658.020 kb on + strand, within HMPREF1078_RS10160 at 658.021 kb on - strand, within HMPREF1078_RS10160 at 658.021 kb on - strand, within HMPREF1078_RS10160 at 658.022 kb on + strand, within HMPREF1078_RS10160 at 658.221 kb on - strand, within HMPREF1078_RS10160 at 658.236 kb on + strand, within HMPREF1078_RS10160 at 658.262 kb on - strand, within HMPREF1078_RS10160 at 658.262 kb on - strand, within HMPREF1078_RS10160 at 658.350 kb on - strand, within HMPREF1078_RS10160 at 658.350 kb on - strand, within HMPREF1078_RS10160 at 658.374 kb on + strand, within HMPREF1078_RS10160 at 658.374 kb on + strand, within HMPREF1078_RS10160 at 658.374 kb on + strand, within HMPREF1078_RS10160 at 658.374 kb on + strand, within HMPREF1078_RS10160 at 658.375 kb on - strand, within HMPREF1078_RS10160 at 658.395 kb on + strand, within HMPREF1078_RS10160 at 658.479 kb on - strand, within HMPREF1078_RS10160 at 658.482 kb on + strand, within HMPREF1078_RS10160 at 658.483 kb on - strand, within HMPREF1078_RS10160 at 658.483 kb on - strand, within HMPREF1078_RS10160 at 658.483 kb on - strand, within HMPREF1078_RS10160 at 658.483 kb on - strand, within HMPREF1078_RS10160 at 658.524 kb on + strand, within HMPREF1078_RS10160 at 658.525 kb on - strand, within HMPREF1078_RS10160 at 658.530 kb on + strand, within HMPREF1078_RS10160 at 658.531 kb on - strand, within HMPREF1078_RS10160 at 658.533 kb on + strand, within HMPREF1078_RS10160 at 658.533 kb on + strand, within HMPREF1078_RS10160 at 658.533 kb on + strand, within HMPREF1078_RS10160 at 658.534 kb on - strand, within HMPREF1078_RS10160 at 658.534 kb on - strand, within HMPREF1078_RS10160 at 658.652 kb on + strand, within HMPREF1078_RS10160 at 658.652 kb on + strand, within HMPREF1078_RS10160 at 658.664 kb on - strand, within HMPREF1078_RS10160 at 658.764 kb on + strand, within HMPREF1078_RS10160 at 658.798 kb on + strand, within HMPREF1078_RS10160 at 658.822 kb on + strand, within HMPREF1078_RS10160 at 658.823 kb on - strand, within HMPREF1078_RS10160 at 658.914 kb on + strand, within HMPREF1078_RS10160 at 658.923 kb on + strand, within HMPREF1078_RS10160 at 658.923 kb on + strand, within HMPREF1078_RS10160 at 658.923 kb on + strand, within HMPREF1078_RS10160 at 658.927 kb on - strand, within HMPREF1078_RS10160 at 658.963 kb on - strand, within HMPREF1078_RS10160 at 659.005 kb on + strand, within HMPREF1078_RS10160 at 659.006 kb on - strand, within HMPREF1078_RS10160 at 659.006 kb on - strand, within HMPREF1078_RS10160 at 659.023 kb on + strand, within HMPREF1078_RS10160 at 659.024 kb on - strand, within HMPREF1078_RS10160 at 659.026 kb on - strand, within HMPREF1078_RS10160 at 659.026 kb on - strand, within HMPREF1078_RS10160 at 659.090 kb on - strand at 659.092 kb on - strand at 659.092 kb on - strand at 659.132 kb on + strand at 659.142 kb on + strand at 659.253 kb on + strand at 659.254 kb on - strand at 659.279 kb on + strand at 659.285 kb on - strand at 659.294 kb on - strand at 659.305 kb on + strand at 659.305 kb on + strand at 659.305 kb on + strand at 659.306 kb on - strand at 659.310 kb on - strand at 659.313 kb on - strand at 659.316 kb on + strand at 659.316 kb on + strand at 659.321 kb on + strand at 659.322 kb on - strand at 659.322 kb on - strand at 659.330 kb on + strand at 659.331 kb on - strand at 659.393 kb on + strand at 659.393 kb on + strand at 659.393 kb on + strand at 659.394 kb on - strand at 659.483 kb on - strand, within HMPREF1078_RS10165 at 659.688 kb on + strand, within HMPREF1078_RS10165 at 659.689 kb on - strand, within HMPREF1078_RS10165 at 659.689 kb on - strand, within HMPREF1078_RS10165 at 659.690 kb on + strand, within HMPREF1078_RS10165 at 659.690 kb on + strand, within HMPREF1078_RS10165 at 659.691 kb on - strand, within HMPREF1078_RS10165 at 659.691 kb on - strand, within HMPREF1078_RS10165 at 659.742 kb on + strand, within HMPREF1078_RS10165 at 659.923 kb on - strand, within HMPREF1078_RS10165 at 659.923 kb on - strand, within HMPREF1078_RS10165 at 659.985 kb on - strand, within HMPREF1078_RS10165 at 660.024 kb on - strand, within HMPREF1078_RS10165 at 660.072 kb on + strand, within HMPREF1078_RS10165 at 660.073 kb on - strand, within HMPREF1078_RS10165 at 660.073 kb on - strand, within HMPREF1078_RS10165 at 660.073 kb on - strand, within HMPREF1078_RS10165 at 660.107 kb on + strand, within HMPREF1078_RS10165 at 660.107 kb on + strand, within HMPREF1078_RS10165 at 660.107 kb on + strand, within HMPREF1078_RS10165 at 660.148 kb on - strand, within HMPREF1078_RS10165 at 660.263 kb on + strand, within HMPREF1078_RS10165
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 656,315 + HMPREF1078_RS10155 0.18 -0.8 656,315 + HMPREF1078_RS10155 0.18 +0.3 656,315 + HMPREF1078_RS10155 0.18 -0.7 656,315 + HMPREF1078_RS10155 0.18 +0.3 656,317 + HMPREF1078_RS10155 0.18 +1.5 656,317 + HMPREF1078_RS10155 0.18 -2.4 656,317 + HMPREF1078_RS10155 0.18 -2.8 656,318 - HMPREF1078_RS10155 0.18 +1.4 656,318 - HMPREF1078_RS10155 0.18 +1.8 656,385 - HMPREF1078_RS10155 0.25 -0.1 656,385 - HMPREF1078_RS10155 0.25 -0.6 656,464 + HMPREF1078_RS10155 0.34 +0.1 656,495 + HMPREF1078_RS10155 0.37 -0.2 656,496 - HMPREF1078_RS10155 0.37 -1.9 656,502 - HMPREF1078_RS10155 0.38 +2.8 656,534 - HMPREF1078_RS10155 0.42 -1.3 656,534 - HMPREF1078_RS10155 0.42 +0.6 656,546 + HMPREF1078_RS10155 0.43 -2.7 656,602 - HMPREF1078_RS10155 0.49 -0.7 656,638 - HMPREF1078_RS10155 0.53 +0.8 656,649 + HMPREF1078_RS10155 0.54 +0.5 656,649 + HMPREF1078_RS10155 0.54 -0.5 656,650 - HMPREF1078_RS10155 0.54 -0.4 656,653 + HMPREF1078_RS10155 0.55 +2.5 656,654 - HMPREF1078_RS10155 0.55 -0.4 656,654 - HMPREF1078_RS10155 0.55 +0.1 656,657 + HMPREF1078_RS10155 0.55 -1.7 656,696 - HMPREF1078_RS10155 0.59 +0.9 656,701 + HMPREF1078_RS10155 0.60 -2.6 656,756 + HMPREF1078_RS10155 0.66 +0.6 656,775 - HMPREF1078_RS10155 0.68 -2.4 656,803 + HMPREF1078_RS10155 0.71 +0.5 656,804 - HMPREF1078_RS10155 0.71 +1.6 656,804 - HMPREF1078_RS10155 0.71 -1.3 656,804 - HMPREF1078_RS10155 0.71 +1.0 656,804 - HMPREF1078_RS10155 0.71 -0.3 656,804 - HMPREF1078_RS10155 0.71 -0.2 656,804 - HMPREF1078_RS10155 0.71 -1.1 656,814 - HMPREF1078_RS10155 0.72 -0.1 656,821 + HMPREF1078_RS10155 0.73 -0.4 656,871 - HMPREF1078_RS10155 0.78 +1.9 656,904 + HMPREF1078_RS10155 0.82 -1.1 656,911 + HMPREF1078_RS10155 0.83 -0.3 657,036 + +0.9 657,037 - -0.1 657,052 + +1.2 657,053 - +0.9 657,057 + +0.5 657,071 + +1.3 657,074 + +0.3 657,075 - +0.5 657,075 - -1.5 657,075 - +0.3 657,075 - -1.9 657,100 - -0.4 657,137 - -0.1 657,141 - +0.0 657,141 - +1.2 657,149 + +0.7 657,221 - +1.2 657,228 + -1.8 657,235 + +0.5 657,236 - +0.2 657,254 + -0.1 657,255 - +0.9 657,281 - -0.4 657,297 + -0.7 657,336 - -0.1 657,336 - -0.1 657,420 + -1.4 657,439 + -1.9 657,517 - HMPREF1078_RS10160 0.12 -0.7 657,586 + HMPREF1078_RS10160 0.15 -1.1 657,596 + HMPREF1078_RS10160 0.16 +0.9 657,721 + HMPREF1078_RS10160 0.22 -0.7 657,751 + HMPREF1078_RS10160 0.23 +0.9 657,751 + HMPREF1078_RS10160 0.23 +1.5 657,751 + HMPREF1078_RS10160 0.23 -0.7 657,752 - HMPREF1078_RS10160 0.24 -1.9 657,752 - HMPREF1078_RS10160 0.24 -2.7 657,752 - HMPREF1078_RS10160 0.24 -0.1 657,752 - HMPREF1078_RS10160 0.24 +0.9 657,753 + HMPREF1078_RS10160 0.24 -0.7 657,753 + HMPREF1078_RS10160 0.24 -1.9 657,754 - HMPREF1078_RS10160 0.24 -0.1 657,754 - HMPREF1078_RS10160 0.24 -0.7 657,754 - HMPREF1078_RS10160 0.24 -0.1 657,754 - HMPREF1078_RS10160 0.24 -0.7 657,754 - HMPREF1078_RS10160 0.24 -2.2 657,754 - HMPREF1078_RS10160 0.24 -2.2 657,754 - HMPREF1078_RS10160 0.24 -2.7 657,807 + HMPREF1078_RS10160 0.26 +0.9 657,808 - HMPREF1078_RS10160 0.26 -1.7 657,834 + HMPREF1078_RS10160 0.28 -0.1 657,835 - HMPREF1078_RS10160 0.28 -3.1 657,864 + HMPREF1078_RS10160 0.29 +0.9 657,869 - HMPREF1078_RS10160 0.29 -1.7 657,967 + HMPREF1078_RS10160 0.34 -1.1 658,020 + HMPREF1078_RS10160 0.37 -0.1 658,021 - HMPREF1078_RS10160 0.37 -3.0 658,021 - HMPREF1078_RS10160 0.37 -2.7 658,022 + HMPREF1078_RS10160 0.37 -0.7 658,221 - HMPREF1078_RS10160 0.47 +0.9 658,236 + HMPREF1078_RS10160 0.48 -1.7 658,262 - HMPREF1078_RS10160 0.49 -2.8 658,262 - HMPREF1078_RS10160 0.49 -1.7 658,350 - HMPREF1078_RS10160 0.54 -2.1 658,350 - HMPREF1078_RS10160 0.54 -2.1 658,374 + HMPREF1078_RS10160 0.55 +0.9 658,374 + HMPREF1078_RS10160 0.55 -1.9 658,374 + HMPREF1078_RS10160 0.55 +0.9 658,374 + HMPREF1078_RS10160 0.55 -1.9 658,375 - HMPREF1078_RS10160 0.55 -1.7 658,395 + HMPREF1078_RS10160 0.56 -1.1 658,479 - HMPREF1078_RS10160 0.60 -1.4 658,482 + HMPREF1078_RS10160 0.60 -0.7 658,483 - HMPREF1078_RS10160 0.60 -2.4 658,483 - HMPREF1078_RS10160 0.60 -2.1 658,483 - HMPREF1078_RS10160 0.60 -0.7 658,483 - HMPREF1078_RS10160 0.60 +0.9 658,524 + HMPREF1078_RS10160 0.62 -1.1 658,525 - HMPREF1078_RS10160 0.62 -2.1 658,530 + HMPREF1078_RS10160 0.63 -0.7 658,531 - HMPREF1078_RS10160 0.63 -2.2 658,533 + HMPREF1078_RS10160 0.63 -0.1 658,533 + HMPREF1078_RS10160 0.63 +0.9 658,533 + HMPREF1078_RS10160 0.63 -2.2 658,534 - HMPREF1078_RS10160 0.63 -1.7 658,534 - HMPREF1078_RS10160 0.63 -0.1 658,652 + HMPREF1078_RS10160 0.69 +0.9 658,652 + HMPREF1078_RS10160 0.69 -2.4 658,664 - HMPREF1078_RS10160 0.69 -1.1 658,764 + HMPREF1078_RS10160 0.74 -1.7 658,798 + HMPREF1078_RS10160 0.76 -1.1 658,822 + HMPREF1078_RS10160 0.77 -1.9 658,823 - HMPREF1078_RS10160 0.77 -2.1 658,914 + HMPREF1078_RS10160 0.82 -1.1 658,923 + HMPREF1078_RS10160 0.82 +0.9 658,923 + HMPREF1078_RS10160 0.82 +0.9 658,923 + HMPREF1078_RS10160 0.82 -0.1 658,927 - HMPREF1078_RS10160 0.83 -1.4 658,963 - HMPREF1078_RS10160 0.84 -0.1 659,005 + HMPREF1078_RS10160 0.87 -0.7 659,006 - HMPREF1078_RS10160 0.87 -2.1 659,006 - HMPREF1078_RS10160 0.87 -3.1 659,023 + HMPREF1078_RS10160 0.87 -2.8 659,024 - HMPREF1078_RS10160 0.87 -2.4 659,026 - HMPREF1078_RS10160 0.88 -2.2 659,026 - HMPREF1078_RS10160 0.88 -2.2 659,090 - -0.1 659,092 - -0.1 659,092 - -0.7 659,132 + -1.4 659,142 + -0.1 659,253 + -0.7 659,254 - -1.1 659,279 + -0.7 659,285 - -1.4 659,294 - +0.0 659,305 + -0.7 659,305 + -1.1 659,305 + -1.1 659,306 - -1.7 659,310 - +0.9 659,313 - +0.1 659,316 + -1.4 659,316 + -0.1 659,321 + -1.6 659,322 - -1.1 659,322 - -0.1 659,330 + -1.4 659,331 - -0.1 659,393 + -1.2 659,393 + +1.2 659,393 + -1.8 659,394 - -0.7 659,483 - HMPREF1078_RS10165 0.13 +0.7 659,688 + HMPREF1078_RS10165 0.29 -0.7 659,689 - HMPREF1078_RS10165 0.29 +0.3 659,689 - HMPREF1078_RS10165 0.29 -2.8 659,690 + HMPREF1078_RS10165 0.30 +1.7 659,690 + HMPREF1078_RS10165 0.30 -0.1 659,691 - HMPREF1078_RS10165 0.30 +0.9 659,691 - HMPREF1078_RS10165 0.30 +0.2 659,742 + HMPREF1078_RS10165 0.34 -1.9 659,923 - HMPREF1078_RS10165 0.49 +0.9 659,923 - HMPREF1078_RS10165 0.49 +2.5 659,985 - HMPREF1078_RS10165 0.54 -0.7 660,024 - HMPREF1078_RS10165 0.57 -1.1 660,072 + HMPREF1078_RS10165 0.61 +0.9 660,073 - HMPREF1078_RS10165 0.61 -1.2 660,073 - HMPREF1078_RS10165 0.61 -1.7 660,073 - HMPREF1078_RS10165 0.61 -0.1 660,107 + HMPREF1078_RS10165 0.64 +0.7 660,107 + HMPREF1078_RS10165 0.64 +0.9 660,107 + HMPREF1078_RS10165 0.64 -0.7 660,148 - HMPREF1078_RS10165 0.67 +0.0 660,263 + HMPREF1078_RS10165 0.76 -0.6
Or see this region's nucleotide sequence