Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS09990

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS09985 and HMPREF1078_RS09990 are separated by 96 nucleotidesHMPREF1078_RS09990 and HMPREF1078_RS09995 are separated by 239 nucleotides HMPREF1078_RS09985: HMPREF1078_RS09985 - substrate-binding domain-containing protein, at 615,510 to 618,242 _RS09985 HMPREF1078_RS09990: HMPREF1078_RS09990 - WbuC family cupin fold metalloprotein, at 618,339 to 618,806 _RS09990 HMPREF1078_RS09995: HMPREF1078_RS09995 - U32 family peptidase, at 619,046 to 620,875 _RS09995 Position (kb) 618 619Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 617.398 kb on - strand, within HMPREF1078_RS09985at 617.766 kb on + strand, within HMPREF1078_RS09985at 617.776 kb on - strand, within HMPREF1078_RS09985at 617.780 kb on + strand, within HMPREF1078_RS09985at 617.781 kb on - strand, within HMPREF1078_RS09985at 617.856 kb on - strand, within HMPREF1078_RS09985at 617.856 kb on - strand, within HMPREF1078_RS09985at 617.857 kb on + strand, within HMPREF1078_RS09985at 617.857 kb on + strand, within HMPREF1078_RS09985at 617.857 kb on + strand, within HMPREF1078_RS09985at 617.857 kb on + strand, within HMPREF1078_RS09985at 617.858 kb on - strand, within HMPREF1078_RS09985at 617.858 kb on - strand, within HMPREF1078_RS09985at 617.864 kb on + strand, within HMPREF1078_RS09985at 617.976 kb on + strandat 617.977 kb on - strandat 617.988 kb on - strandat 618.092 kb on + strandat 618.131 kb on + strandat 618.131 kb on + strandat 618.131 kb on + strandat 618.205 kb on - strandat 618.205 kb on - strandat 618.220 kb on + strandat 618.220 kb on + strandat 618.223 kb on + strandat 618.224 kb on - strandat 618.224 kb on - strandat 618.229 kb on - strandat 618.324 kb on + strandat 618.324 kb on + strandat 618.480 kb on + strand, within HMPREF1078_RS09990at 618.481 kb on - strand, within HMPREF1078_RS09990at 618.553 kb on + strand, within HMPREF1078_RS09990at 618.596 kb on - strand, within HMPREF1078_RS09990at 618.682 kb on + strand, within HMPREF1078_RS09990at 618.683 kb on - strand, within HMPREF1078_RS09990at 618.684 kb on + strand, within HMPREF1078_RS09990at 618.684 kb on + strand, within HMPREF1078_RS09990at 618.685 kb on - strand, within HMPREF1078_RS09990at 618.777 kb on + strandat 618.778 kb on - strandat 618.779 kb on + strandat 618.780 kb on - strandat 618.780 kb on - strandat 618.788 kb on - strandat 618.790 kb on + strandat 618.803 kb on - strandat 618.803 kb on - strandat 618.816 kb on - strandat 618.940 kb on + strandat 618.940 kb on + strandat 618.940 kb on + strandat 618.945 kb on - strandat 619.015 kb on - strandat 619.114 kb on - strandat 619.126 kb on - strandat 619.158 kb on + strandat 619.319 kb on - strand, within HMPREF1078_RS09995at 619.341 kb on - strand, within HMPREF1078_RS09995at 619.507 kb on + strand, within HMPREF1078_RS09995at 619.508 kb on - strand, within HMPREF1078_RS09995at 619.535 kb on + strand, within HMPREF1078_RS09995at 619.537 kb on + strand, within HMPREF1078_RS09995at 619.538 kb on - strand, within HMPREF1078_RS09995at 619.540 kb on + strand, within HMPREF1078_RS09995at 619.541 kb on - strand, within HMPREF1078_RS09995at 619.618 kb on + strand, within HMPREF1078_RS09995at 619.619 kb on - strand, within HMPREF1078_RS09995

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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617,398 - HMPREF1078_RS09985 0.69 +0.0
617,766 + HMPREF1078_RS09985 0.83 +0.9
617,776 - HMPREF1078_RS09985 0.83 +0.7
617,780 + HMPREF1078_RS09985 0.83 +1.7
617,781 - HMPREF1078_RS09985 0.83 -3.2
617,856 - HMPREF1078_RS09985 0.86 -1.2
617,856 - HMPREF1078_RS09985 0.86 -0.1
617,857 + HMPREF1078_RS09985 0.86 -1.2
617,857 + HMPREF1078_RS09985 0.86 +0.9
617,857 + HMPREF1078_RS09985 0.86 +0.3
617,857 + HMPREF1078_RS09985 0.86 +0.3
617,858 - HMPREF1078_RS09985 0.86 +1.5
617,858 - HMPREF1078_RS09985 0.86 +0.9
617,864 + HMPREF1078_RS09985 0.86 +0.9
617,976 + -3.0
617,977 - +0.0
617,988 - +0.9
618,092 + -2.4
618,131 + -1.1
618,131 + -0.7
618,131 + -0.4
618,205 - -2.2
618,205 - -0.7
618,220 + -2.4
618,220 + -2.3
618,223 + -1.9
618,224 - -1.7
618,224 - -1.5
618,229 - +0.2
618,324 + +0.9
618,324 + -1.7
618,480 + HMPREF1078_RS09990 0.30 -0.7
618,481 - HMPREF1078_RS09990 0.30 -2.2
618,553 + HMPREF1078_RS09990 0.46 -1.6
618,596 - HMPREF1078_RS09990 0.55 +0.0
618,682 + HMPREF1078_RS09990 0.73 -1.4
618,683 - HMPREF1078_RS09990 0.74 -2.2
618,684 + HMPREF1078_RS09990 0.74 -1.8
618,684 + HMPREF1078_RS09990 0.74 -3.4
618,685 - HMPREF1078_RS09990 0.74 -1.7
618,777 + -0.1
618,778 - -0.7
618,779 + -0.3
618,780 - -2.1
618,780 - +0.7
618,788 - -1.1
618,790 + -1.2
618,803 - -2.4
618,803 - -0.4
618,816 - -3.7
618,940 + +0.1
618,940 + -0.2
618,940 + +1.7
618,945 - +0.1
619,015 - +1.9
619,114 - -0.7
619,126 - -1.1
619,158 + -0.6
619,319 - HMPREF1078_RS09995 0.15 -0.7
619,341 - HMPREF1078_RS09995 0.16 -0.6
619,507 + HMPREF1078_RS09995 0.25 +1.3
619,508 - HMPREF1078_RS09995 0.25 +0.4
619,535 + HMPREF1078_RS09995 0.27 +0.4
619,537 + HMPREF1078_RS09995 0.27 +1.3
619,538 - HMPREF1078_RS09995 0.27 -0.5
619,540 + HMPREF1078_RS09995 0.27 +0.9
619,541 - HMPREF1078_RS09995 0.27 -1.5
619,618 + HMPREF1078_RS09995 0.31 -1.1
619,619 - HMPREF1078_RS09995 0.31 +0.5

Or see this region's nucleotide sequence