Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09635 and HMPREF1078_RS09640 are separated by 99 nucleotides HMPREF1078_RS09640 and HMPREF1078_RS09645 are separated by 110 nucleotides HMPREF1078_RS09645 and HMPREF1078_RS09650 overlap by 18 nucleotides
HMPREF1078_RS09635: HMPREF1078_RS09635 - tRNA-Gly, at 528,952 to 529,027
_RS09635
HMPREF1078_RS09640: HMPREF1078_RS09640 - SGNH/GDSL hydrolase family protein, at 529,127 to 529,897
_RS09640
HMPREF1078_RS09645: HMPREF1078_RS09645 - NAD(P)-dependent oxidoreductase, at 530,008 to 530,892
_RS09645
HMPREF1078_RS09650: HMPREF1078_RS09650 - DUF108 domain-containing protein, at 530,875 to 531,663
_RS09650
Position (kb) 530
531 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 529.045 kb on + strand at 529.092 kb on + strand at 529.123 kb on + strand at 529.128 kb on + strand at 529.268 kb on + strand, within HMPREF1078_RS09640 at 529.273 kb on + strand, within HMPREF1078_RS09640 at 529.273 kb on + strand, within HMPREF1078_RS09640 at 529.346 kb on + strand, within HMPREF1078_RS09640 at 529.349 kb on - strand, within HMPREF1078_RS09640 at 529.388 kb on + strand, within HMPREF1078_RS09640 at 529.389 kb on - strand, within HMPREF1078_RS09640 at 529.389 kb on - strand, within HMPREF1078_RS09640 at 529.418 kb on - strand, within HMPREF1078_RS09640 at 529.449 kb on + strand, within HMPREF1078_RS09640 at 529.469 kb on - strand, within HMPREF1078_RS09640 at 529.471 kb on - strand, within HMPREF1078_RS09640 at 529.471 kb on - strand, within HMPREF1078_RS09640 at 529.487 kb on - strand, within HMPREF1078_RS09640 at 529.665 kb on + strand, within HMPREF1078_RS09640 at 529.666 kb on - strand, within HMPREF1078_RS09640 at 529.705 kb on + strand, within HMPREF1078_RS09640 at 529.790 kb on + strand, within HMPREF1078_RS09640 at 529.790 kb on + strand, within HMPREF1078_RS09640 at 529.791 kb on - strand, within HMPREF1078_RS09640 at 529.791 kb on - strand, within HMPREF1078_RS09640 at 529.791 kb on - strand, within HMPREF1078_RS09640 at 529.871 kb on - strand at 529.901 kb on + strand at 529.940 kb on - strand at 529.947 kb on + strand at 529.968 kb on + strand at 530.013 kb on + strand at 530.022 kb on - strand at 530.024 kb on + strand at 530.026 kb on - strand at 530.031 kb on - strand at 530.090 kb on + strand at 530.090 kb on + strand at 530.091 kb on - strand at 530.091 kb on - strand at 530.170 kb on + strand, within HMPREF1078_RS09645 at 530.171 kb on - strand, within HMPREF1078_RS09645 at 530.172 kb on + strand, within HMPREF1078_RS09645 at 530.173 kb on - strand, within HMPREF1078_RS09645 at 530.195 kb on + strand, within HMPREF1078_RS09645 at 530.214 kb on + strand, within HMPREF1078_RS09645 at 530.221 kb on + strand, within HMPREF1078_RS09645 at 530.246 kb on - strand, within HMPREF1078_RS09645 at 530.344 kb on + strand, within HMPREF1078_RS09645 at 530.345 kb on - strand, within HMPREF1078_RS09645 at 530.363 kb on + strand, within HMPREF1078_RS09645 at 530.364 kb on - strand, within HMPREF1078_RS09645 at 530.364 kb on - strand, within HMPREF1078_RS09645 at 530.437 kb on - strand, within HMPREF1078_RS09645 at 530.507 kb on - strand, within HMPREF1078_RS09645 at 530.507 kb on - strand, within HMPREF1078_RS09645 at 530.507 kb on - strand, within HMPREF1078_RS09645 at 530.565 kb on - strand, within HMPREF1078_RS09645 at 530.565 kb on - strand, within HMPREF1078_RS09645 at 530.667 kb on - strand, within HMPREF1078_RS09645 at 530.667 kb on - strand, within HMPREF1078_RS09645 at 530.667 kb on - strand, within HMPREF1078_RS09645 at 530.734 kb on - strand, within HMPREF1078_RS09645 at 530.734 kb on - strand, within HMPREF1078_RS09645 at 530.798 kb on + strand, within HMPREF1078_RS09645 at 530.799 kb on - strand, within HMPREF1078_RS09645 at 530.799 kb on - strand, within HMPREF1078_RS09645 at 530.807 kb on + strand at 530.862 kb on - strand at 530.882 kb on - strand at 530.882 kb on - strand at 530.898 kb on + strand at 530.901 kb on + strand at 530.901 kb on + strand at 530.901 kb on + strand at 530.902 kb on - strand at 530.902 kb on - strand at 530.952 kb on - strand at 530.971 kb on + strand, within HMPREF1078_RS09650 at 530.971 kb on + strand, within HMPREF1078_RS09650 at 530.972 kb on - strand, within HMPREF1078_RS09650 at 530.972 kb on - strand, within HMPREF1078_RS09650 at 530.972 kb on - strand, within HMPREF1078_RS09650 at 530.972 kb on - strand, within HMPREF1078_RS09650 at 530.972 kb on - strand, within HMPREF1078_RS09650 at 530.972 kb on - strand, within HMPREF1078_RS09650 at 531.032 kb on - strand, within HMPREF1078_RS09650 at 531.293 kb on + strand, within HMPREF1078_RS09650 at 531.293 kb on + strand, within HMPREF1078_RS09650 at 531.293 kb on + strand, within HMPREF1078_RS09650 at 531.294 kb on - strand, within HMPREF1078_RS09650 at 531.294 kb on - strand, within HMPREF1078_RS09650 at 531.294 kb on - strand, within HMPREF1078_RS09650 at 531.294 kb on - strand, within HMPREF1078_RS09650 at 531.297 kb on + strand, within HMPREF1078_RS09650 at 531.297 kb on + strand, within HMPREF1078_RS09650 at 531.297 kb on + strand, within HMPREF1078_RS09650 at 531.297 kb on + strand, within HMPREF1078_RS09650 at 531.297 kb on + strand, within HMPREF1078_RS09650 at 531.298 kb on - strand, within HMPREF1078_RS09650 at 531.298 kb on - strand, within HMPREF1078_RS09650 at 531.298 kb on - strand, within HMPREF1078_RS09650 at 531.328 kb on + strand, within HMPREF1078_RS09650 at 531.328 kb on + strand, within HMPREF1078_RS09650 at 531.451 kb on + strand, within HMPREF1078_RS09650 at 531.451 kb on + strand, within HMPREF1078_RS09650 at 531.451 kb on + strand, within HMPREF1078_RS09650 at 531.451 kb on + strand, within HMPREF1078_RS09650 at 531.451 kb on + strand, within HMPREF1078_RS09650 at 531.451 kb on + strand, within HMPREF1078_RS09650 at 531.451 kb on + strand, within HMPREF1078_RS09650 at 531.451 kb on + strand, within HMPREF1078_RS09650 at 531.451 kb on + strand, within HMPREF1078_RS09650 at 531.452 kb on - strand, within HMPREF1078_RS09650 at 531.452 kb on - strand, within HMPREF1078_RS09650 at 531.452 kb on - strand, within HMPREF1078_RS09650 at 531.452 kb on - strand, within HMPREF1078_RS09650 at 531.453 kb on + strand, within HMPREF1078_RS09650 at 531.453 kb on + strand, within HMPREF1078_RS09650 at 531.454 kb on - strand, within HMPREF1078_RS09650 at 531.487 kb on - strand, within HMPREF1078_RS09650 at 531.487 kb on - strand, within HMPREF1078_RS09650 at 531.534 kb on + strand, within HMPREF1078_RS09650 at 531.535 kb on - strand, within HMPREF1078_RS09650 at 531.535 kb on - strand, within HMPREF1078_RS09650 at 531.555 kb on + strand, within HMPREF1078_RS09650 at 531.582 kb on - strand, within HMPREF1078_RS09650 at 531.647 kb on - strand at 531.650 kb on - strand at 531.667 kb on + strand at 531.679 kb on + strand at 531.680 kb on - strand at 531.680 kb on - strand at 531.684 kb on - strand at 531.800 kb on + strand at 531.800 kb on + strand at 531.801 kb on - strand at 531.802 kb on + strand at 531.802 kb on + strand at 531.803 kb on - strand at 531.803 kb on - strand at 531.850 kb on + strand at 531.850 kb on + strand at 531.851 kb on - strand at 531.851 kb on - strand at 531.851 kb on - strand at 531.851 kb on - strand at 531.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 529,045 + -3.8 529,092 + +2.9 529,123 + -0.0 529,128 + +0.6 529,268 + HMPREF1078_RS09640 0.18 +0.6 529,273 + HMPREF1078_RS09640 0.19 -0.1 529,273 + HMPREF1078_RS09640 0.19 -3.0 529,346 + HMPREF1078_RS09640 0.28 -0.7 529,349 - HMPREF1078_RS09640 0.29 +0.6 529,388 + HMPREF1078_RS09640 0.34 +0.4 529,389 - HMPREF1078_RS09640 0.34 -2.0 529,389 - HMPREF1078_RS09640 0.34 +0.5 529,418 - HMPREF1078_RS09640 0.38 +0.8 529,449 + HMPREF1078_RS09640 0.42 +1.7 529,469 - HMPREF1078_RS09640 0.44 -0.1 529,471 - HMPREF1078_RS09640 0.45 -0.3 529,471 - HMPREF1078_RS09640 0.45 +0.6 529,487 - HMPREF1078_RS09640 0.47 -0.2 529,665 + HMPREF1078_RS09640 0.70 -1.7 529,666 - HMPREF1078_RS09640 0.70 -4.9 529,705 + HMPREF1078_RS09640 0.75 -0.1 529,790 + HMPREF1078_RS09640 0.86 -0.2 529,790 + HMPREF1078_RS09640 0.86 +0.4 529,791 - HMPREF1078_RS09640 0.86 -2.0 529,791 - HMPREF1078_RS09640 0.86 -1.9 529,791 - HMPREF1078_RS09640 0.86 +0.3 529,871 - -1.9 529,901 + +0.2 529,940 - +0.5 529,947 + -1.9 529,968 + +1.3 530,013 + -0.9 530,022 - +0.1 530,024 + +0.9 530,026 - +0.9 530,031 - -0.9 530,090 + -0.1 530,090 + +1.3 530,091 - +0.7 530,091 - -1.5 530,170 + HMPREF1078_RS09645 0.18 -2.5 530,171 - HMPREF1078_RS09645 0.18 -1.1 530,172 + HMPREF1078_RS09645 0.19 -2.2 530,173 - HMPREF1078_RS09645 0.19 +0.7 530,195 + HMPREF1078_RS09645 0.21 -0.7 530,214 + HMPREF1078_RS09645 0.23 -1.4 530,221 + HMPREF1078_RS09645 0.24 +1.9 530,246 - HMPREF1078_RS09645 0.27 +0.4 530,344 + HMPREF1078_RS09645 0.38 -1.5 530,345 - HMPREF1078_RS09645 0.38 -1.1 530,363 + HMPREF1078_RS09645 0.40 -0.9 530,364 - HMPREF1078_RS09645 0.40 -0.5 530,364 - HMPREF1078_RS09645 0.40 -1.7 530,437 - HMPREF1078_RS09645 0.48 +0.1 530,507 - HMPREF1078_RS09645 0.56 -0.4 530,507 - HMPREF1078_RS09645 0.56 -2.8 530,507 - HMPREF1078_RS09645 0.56 +0.4 530,565 - HMPREF1078_RS09645 0.63 +0.1 530,565 - HMPREF1078_RS09645 0.63 -0.5 530,667 - HMPREF1078_RS09645 0.74 -0.1 530,667 - HMPREF1078_RS09645 0.74 -1.2 530,667 - HMPREF1078_RS09645 0.74 +1.9 530,734 - HMPREF1078_RS09645 0.82 -0.5 530,734 - HMPREF1078_RS09645 0.82 +1.3 530,798 + HMPREF1078_RS09645 0.89 -0.0 530,799 - HMPREF1078_RS09645 0.89 -1.1 530,799 - HMPREF1078_RS09645 0.89 +1.0 530,807 + -1.1 530,862 - -0.1 530,882 - +0.5 530,882 - +1.4 530,898 + +0.9 530,901 + -0.8 530,901 + +0.9 530,901 + -0.1 530,902 - -0.5 530,902 - +0.1 530,952 - +0.4 530,971 + HMPREF1078_RS09650 0.12 +0.8 530,971 + HMPREF1078_RS09650 0.12 -0.7 530,972 - HMPREF1078_RS09650 0.12 +0.2 530,972 - HMPREF1078_RS09650 0.12 +0.3 530,972 - HMPREF1078_RS09650 0.12 +0.9 530,972 - HMPREF1078_RS09650 0.12 -1.7 530,972 - HMPREF1078_RS09650 0.12 -0.1 530,972 - HMPREF1078_RS09650 0.12 +2.3 531,032 - HMPREF1078_RS09650 0.20 -1.0 531,293 + HMPREF1078_RS09650 0.53 +0.6 531,293 + HMPREF1078_RS09650 0.53 -0.9 531,293 + HMPREF1078_RS09650 0.53 +0.7 531,294 - HMPREF1078_RS09650 0.53 -0.7 531,294 - HMPREF1078_RS09650 0.53 +0.2 531,294 - HMPREF1078_RS09650 0.53 +2.4 531,294 - HMPREF1078_RS09650 0.53 -0.2 531,297 + HMPREF1078_RS09650 0.53 +0.1 531,297 + HMPREF1078_RS09650 0.53 +0.7 531,297 + HMPREF1078_RS09650 0.53 -0.4 531,297 + HMPREF1078_RS09650 0.53 +1.6 531,297 + HMPREF1078_RS09650 0.53 -0.1 531,298 - HMPREF1078_RS09650 0.54 -0.6 531,298 - HMPREF1078_RS09650 0.54 +1.9 531,298 - HMPREF1078_RS09650 0.54 +0.7 531,328 + HMPREF1078_RS09650 0.57 +2.1 531,328 + HMPREF1078_RS09650 0.57 -1.1 531,451 + HMPREF1078_RS09650 0.73 -2.0 531,451 + HMPREF1078_RS09650 0.73 -0.3 531,451 + HMPREF1078_RS09650 0.73 -0.7 531,451 + HMPREF1078_RS09650 0.73 -1.4 531,451 + HMPREF1078_RS09650 0.73 -0.4 531,451 + HMPREF1078_RS09650 0.73 -3.1 531,451 + HMPREF1078_RS09650 0.73 +1.3 531,451 + HMPREF1078_RS09650 0.73 +1.9 531,451 + HMPREF1078_RS09650 0.73 -0.2 531,452 - HMPREF1078_RS09650 0.73 -2.1 531,452 - HMPREF1078_RS09650 0.73 -1.1 531,452 - HMPREF1078_RS09650 0.73 +1.8 531,452 - HMPREF1078_RS09650 0.73 -0.7 531,453 + HMPREF1078_RS09650 0.73 -2.0 531,453 + HMPREF1078_RS09650 0.73 -0.3 531,454 - HMPREF1078_RS09650 0.73 +1.9 531,487 - HMPREF1078_RS09650 0.78 -1.1 531,487 - HMPREF1078_RS09650 0.78 -0.1 531,534 + HMPREF1078_RS09650 0.84 -0.7 531,535 - HMPREF1078_RS09650 0.84 -0.1 531,535 - HMPREF1078_RS09650 0.84 +0.7 531,555 + HMPREF1078_RS09650 0.86 +0.2 531,582 - HMPREF1078_RS09650 0.90 -0.8 531,647 - +1.5 531,650 - -0.7 531,667 + -0.2 531,679 + -1.4 531,680 - +0.3 531,680 - -1.8 531,684 - +0.4 531,800 + +1.5 531,800 + -0.5 531,801 - -2.0 531,802 + +0.1 531,802 + -0.7 531,803 - -0.4 531,803 - -0.0 531,850 + +0.5 531,850 + -0.5 531,851 - +0.0 531,851 - +0.1 531,851 - +1.9 531,851 - +0.3 531,851 - -3.3
Or see this region's nucleotide sequence