Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08710 and HMPREF1078_RS08715 are separated by 87 nucleotides HMPREF1078_RS08715 and HMPREF1078_RS08720 are separated by 29 nucleotides
HMPREF1078_RS08710: HMPREF1078_RS08710 - MFS transporter, at 327,449 to 328,705
_RS08710
HMPREF1078_RS08715: HMPREF1078_RS08715 - galactokinase, at 328,793 to 329,941
_RS08715
HMPREF1078_RS08720: HMPREF1078_RS08720 - NUDIX domain-containing protein, at 329,971 to 330,663
_RS08720
Position (kb) 328
329
330 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 328.703 kb on + strand at 328.704 kb on - strand at 328.710 kb on - strand at 328.711 kb on + strand at 328.711 kb on + strand at 328.711 kb on + strand at 328.712 kb on - strand at 328.712 kb on - strand at 328.712 kb on - strand at 328.712 kb on - strand at 328.712 kb on - strand at 328.715 kb on + strand at 328.716 kb on - strand at 328.716 kb on - strand at 328.747 kb on + strand at 328.748 kb on - strand at 328.757 kb on + strand at 328.770 kb on + strand at 328.770 kb on + strand at 328.770 kb on + strand at 328.773 kb on - strand at 328.793 kb on - strand at 328.793 kb on - strand at 328.793 kb on - strand at 328.830 kb on + strand at 328.846 kb on + strand at 328.851 kb on + strand at 328.851 kb on + strand at 328.851 kb on + strand at 328.851 kb on + strand at 328.851 kb on + strand at 328.851 kb on + strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.852 kb on - strand at 328.853 kb on + strand at 328.853 kb on + strand at 328.853 kb on + strand at 328.870 kb on + strand at 328.892 kb on - strand at 328.898 kb on + strand at 328.899 kb on - strand at 328.972 kb on + strand, within HMPREF1078_RS08715 at 328.972 kb on + strand, within HMPREF1078_RS08715 at 328.972 kb on + strand, within HMPREF1078_RS08715 at 328.973 kb on - strand, within HMPREF1078_RS08715 at 329.060 kb on + strand, within HMPREF1078_RS08715 at 329.061 kb on - strand, within HMPREF1078_RS08715 at 329.062 kb on + strand, within HMPREF1078_RS08715 at 329.063 kb on - strand, within HMPREF1078_RS08715 at 329.139 kb on + strand, within HMPREF1078_RS08715 at 329.140 kb on - strand, within HMPREF1078_RS08715 at 329.140 kb on - strand, within HMPREF1078_RS08715 at 329.140 kb on - strand, within HMPREF1078_RS08715 at 329.187 kb on - strand, within HMPREF1078_RS08715 at 329.187 kb on - strand, within HMPREF1078_RS08715 at 329.243 kb on - strand, within HMPREF1078_RS08715 at 329.266 kb on + strand, within HMPREF1078_RS08715 at 329.266 kb on + strand, within HMPREF1078_RS08715 at 329.266 kb on + strand, within HMPREF1078_RS08715 at 329.266 kb on + strand, within HMPREF1078_RS08715 at 329.267 kb on - strand, within HMPREF1078_RS08715 at 329.267 kb on - strand, within HMPREF1078_RS08715 at 329.270 kb on + strand, within HMPREF1078_RS08715 at 329.270 kb on + strand, within HMPREF1078_RS08715 at 329.271 kb on - strand, within HMPREF1078_RS08715 at 329.271 kb on - strand, within HMPREF1078_RS08715 at 329.293 kb on + strand, within HMPREF1078_RS08715 at 329.363 kb on + strand, within HMPREF1078_RS08715 at 329.366 kb on - strand, within HMPREF1078_RS08715 at 329.366 kb on - strand, within HMPREF1078_RS08715 at 329.539 kb on + strand, within HMPREF1078_RS08715 at 329.579 kb on + strand, within HMPREF1078_RS08715 at 329.579 kb on + strand, within HMPREF1078_RS08715 at 329.579 kb on + strand, within HMPREF1078_RS08715 at 329.580 kb on - strand, within HMPREF1078_RS08715 at 329.580 kb on - strand, within HMPREF1078_RS08715 at 329.580 kb on - strand, within HMPREF1078_RS08715 at 329.580 kb on - strand, within HMPREF1078_RS08715 at 329.581 kb on + strand, within HMPREF1078_RS08715 at 329.581 kb on + strand, within HMPREF1078_RS08715 at 329.582 kb on - strand, within HMPREF1078_RS08715 at 329.582 kb on - strand, within HMPREF1078_RS08715 at 329.610 kb on + strand, within HMPREF1078_RS08715 at 329.611 kb on - strand, within HMPREF1078_RS08715 at 329.708 kb on + strand, within HMPREF1078_RS08715 at 329.806 kb on + strand, within HMPREF1078_RS08715 at 329.807 kb on - strand, within HMPREF1078_RS08715 at 329.834 kb on + strand at 329.867 kb on + strand at 329.893 kb on + strand at 329.893 kb on + strand at 329.893 kb on + strand at 329.898 kb on + strand at 329.898 kb on + strand at 329.899 kb on - strand at 329.899 kb on - strand at 329.899 kb on - strand at 329.900 kb on + strand at 329.901 kb on - strand at 329.901 kb on - strand at 329.902 kb on + strand at 329.902 kb on + strand at 329.902 kb on + strand at 329.903 kb on - strand at 329.903 kb on - strand at 329.903 kb on - strand at 329.903 kb on - strand at 329.907 kb on + strand at 329.907 kb on + strand at 329.907 kb on + strand at 329.907 kb on + strand at 329.911 kb on - strand at 329.939 kb on + strand at 329.942 kb on + strand at 329.942 kb on + strand at 329.942 kb on + strand at 329.943 kb on - strand at 329.943 kb on - strand at 329.946 kb on + strand at 329.986 kb on + strand at 330.007 kb on + strand at 330.017 kb on + strand at 330.024 kb on + strand at 330.024 kb on + strand at 330.024 kb on + strand at 330.024 kb on + strand at 330.025 kb on - strand at 330.027 kb on + strand at 330.027 kb on + strand at 330.029 kb on + strand at 330.054 kb on + strand, within HMPREF1078_RS08720 at 330.055 kb on - strand, within HMPREF1078_RS08720 at 330.059 kb on + strand, within HMPREF1078_RS08720 at 330.059 kb on + strand, within HMPREF1078_RS08720 at 330.059 kb on + strand, within HMPREF1078_RS08720 at 330.059 kb on + strand, within HMPREF1078_RS08720 at 330.062 kb on + strand, within HMPREF1078_RS08720 at 330.063 kb on - strand, within HMPREF1078_RS08720 at 330.067 kb on + strand, within HMPREF1078_RS08720 at 330.067 kb on + strand, within HMPREF1078_RS08720 at 330.076 kb on - strand, within HMPREF1078_RS08720 at 330.076 kb on - strand, within HMPREF1078_RS08720 at 330.138 kb on + strand, within HMPREF1078_RS08720 at 330.138 kb on + strand, within HMPREF1078_RS08720 at 330.138 kb on + strand, within HMPREF1078_RS08720 at 330.138 kb on + strand, within HMPREF1078_RS08720 at 330.140 kb on + strand, within HMPREF1078_RS08720 at 330.140 kb on + strand, within HMPREF1078_RS08720 at 330.186 kb on + strand, within HMPREF1078_RS08720 at 330.206 kb on + strand, within HMPREF1078_RS08720 at 330.207 kb on - strand, within HMPREF1078_RS08720 at 330.249 kb on + strand, within HMPREF1078_RS08720 at 330.257 kb on + strand, within HMPREF1078_RS08720 at 330.262 kb on + strand, within HMPREF1078_RS08720 at 330.262 kb on + strand, within HMPREF1078_RS08720 at 330.262 kb on + strand, within HMPREF1078_RS08720 at 330.263 kb on - strand, within HMPREF1078_RS08720 at 330.263 kb on - strand, within HMPREF1078_RS08720 at 330.265 kb on + strand, within HMPREF1078_RS08720 at 330.265 kb on + strand, within HMPREF1078_RS08720 at 330.280 kb on - strand, within HMPREF1078_RS08720 at 330.280 kb on - strand, within HMPREF1078_RS08720 at 330.313 kb on + strand, within HMPREF1078_RS08720 at 330.313 kb on + strand, within HMPREF1078_RS08720 at 330.314 kb on - strand, within HMPREF1078_RS08720 at 330.314 kb on - strand, within HMPREF1078_RS08720 at 330.314 kb on - strand, within HMPREF1078_RS08720 at 330.315 kb on + strand, within HMPREF1078_RS08720 at 330.315 kb on + strand, within HMPREF1078_RS08720 at 330.355 kb on - strand, within HMPREF1078_RS08720 at 330.513 kb on + strand, within HMPREF1078_RS08720 at 330.514 kb on - strand, within HMPREF1078_RS08720 at 330.599 kb on - strand at 330.599 kb on - strand at 330.601 kb on + strand at 330.601 kb on + strand at 330.603 kb on + strand at 330.603 kb on + strand at 330.649 kb on + strand at 330.650 kb on - strand at 330.661 kb on + strand at 330.661 kb on + strand at 330.708 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.820 kb on + strand at 330.821 kb on - strand at 330.874 kb on - strand at 330.874 kb on - strand at 330.874 kb on - strand at 330.885 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 328,703 + -2.2 328,704 - -0.6 328,710 - -3.4 328,711 + +0.0 328,711 + -0.6 328,711 + +0.3 328,712 - -2.2 328,712 - -2.2 328,712 - -1.2 328,712 - -0.6 328,712 - -0.5 328,715 + -3.1 328,716 - -3.2 328,716 - -2.6 328,747 + -0.3 328,748 - -1.0 328,757 + -0.4 328,770 + -0.3 328,770 + +1.2 328,770 + +0.8 328,773 - -1.6 328,793 - -3.3 328,793 - -1.2 328,793 - -3.2 328,830 + -2.6 328,846 + -1.6 328,851 + -0.9 328,851 + -1.2 328,851 + -3.6 328,851 + -2.2 328,851 + -4.1 328,851 + -2.8 328,852 - -3.1 328,852 - -1.9 328,852 - -0.4 328,852 - -3.2 328,852 - -1.0 328,852 - -0.5 328,852 - -0.8 328,852 - -2.6 328,852 - -1.5 328,852 - -2.0 328,852 - -2.2 328,853 + -2.0 328,853 + -0.6 328,853 + -3.0 328,870 + -1.4 328,892 - -2.3 328,898 + -3.4 328,899 - -3.6 328,972 + HMPREF1078_RS08715 0.16 -1.0 328,972 + HMPREF1078_RS08715 0.16 -1.4 328,972 + HMPREF1078_RS08715 0.16 -2.4 328,973 - HMPREF1078_RS08715 0.16 -1.4 329,060 + HMPREF1078_RS08715 0.23 -1.6 329,061 - HMPREF1078_RS08715 0.23 -3.0 329,062 + HMPREF1078_RS08715 0.23 -1.9 329,063 - HMPREF1078_RS08715 0.23 -4.1 329,139 + HMPREF1078_RS08715 0.30 -3.4 329,140 - HMPREF1078_RS08715 0.30 -0.9 329,140 - HMPREF1078_RS08715 0.30 -1.0 329,140 - HMPREF1078_RS08715 0.30 -0.5 329,187 - HMPREF1078_RS08715 0.34 -3.0 329,187 - HMPREF1078_RS08715 0.34 -0.6 329,243 - HMPREF1078_RS08715 0.39 -2.6 329,266 + HMPREF1078_RS08715 0.41 -2.2 329,266 + HMPREF1078_RS08715 0.41 -1.6 329,266 + HMPREF1078_RS08715 0.41 -1.6 329,266 + HMPREF1078_RS08715 0.41 -1.9 329,267 - HMPREF1078_RS08715 0.41 -2.0 329,267 - HMPREF1078_RS08715 0.41 -3.1 329,270 + HMPREF1078_RS08715 0.42 -0.6 329,270 + HMPREF1078_RS08715 0.42 -2.5 329,271 - HMPREF1078_RS08715 0.42 -1.0 329,271 - HMPREF1078_RS08715 0.42 -2.8 329,293 + HMPREF1078_RS08715 0.44 -0.6 329,363 + HMPREF1078_RS08715 0.50 -3.3 329,366 - HMPREF1078_RS08715 0.50 -2.0 329,366 - HMPREF1078_RS08715 0.50 -3.0 329,539 + HMPREF1078_RS08715 0.65 +1.0 329,579 + HMPREF1078_RS08715 0.68 -3.2 329,579 + HMPREF1078_RS08715 0.68 -1.0 329,579 + HMPREF1078_RS08715 0.68 -1.6 329,580 - HMPREF1078_RS08715 0.68 -2.2 329,580 - HMPREF1078_RS08715 0.68 -0.6 329,580 - HMPREF1078_RS08715 0.68 -2.5 329,580 - HMPREF1078_RS08715 0.68 -1.0 329,581 + HMPREF1078_RS08715 0.69 -2.0 329,581 + HMPREF1078_RS08715 0.69 -1.0 329,582 - HMPREF1078_RS08715 0.69 -1.9 329,582 - HMPREF1078_RS08715 0.69 -1.4 329,610 + HMPREF1078_RS08715 0.71 -1.9 329,611 - HMPREF1078_RS08715 0.71 -2.2 329,708 + HMPREF1078_RS08715 0.80 -0.0 329,806 + HMPREF1078_RS08715 0.88 +0.6 329,807 - HMPREF1078_RS08715 0.88 -2.4 329,834 + -3.1 329,867 + -1.0 329,893 + -1.6 329,893 + -3.0 329,893 + -2.0 329,898 + -2.2 329,898 + -1.6 329,899 - -1.6 329,899 - -3.2 329,899 - -1.8 329,900 + -1.6 329,901 - -0.9 329,901 - -2.5 329,902 + -1.4 329,902 + -1.6 329,902 + -2.3 329,903 - -1.4 329,903 - -1.6 329,903 - -1.0 329,903 - -2.5 329,907 + -2.8 329,907 + -1.0 329,907 + -0.4 329,907 + -3.1 329,911 - -2.2 329,939 + +0.2 329,942 + +0.6 329,942 + +1.4 329,942 + +0.8 329,943 - -1.4 329,943 - +0.7 329,946 + +0.2 329,986 + +1.4 330,007 + +0.6 330,017 + -0.6 330,024 + +1.0 330,024 + -1.4 330,024 + -1.6 330,024 + +1.1 330,025 - -0.0 330,027 + +0.2 330,027 + +1.0 330,029 + -0.0 330,054 + HMPREF1078_RS08720 0.12 -0.2 330,055 - HMPREF1078_RS08720 0.12 -1.2 330,059 + HMPREF1078_RS08720 0.13 +0.0 330,059 + HMPREF1078_RS08720 0.13 -1.9 330,059 + HMPREF1078_RS08720 0.13 +0.5 330,059 + HMPREF1078_RS08720 0.13 +0.4 330,062 + HMPREF1078_RS08720 0.13 +0.6 330,063 - HMPREF1078_RS08720 0.13 -1.7 330,067 + HMPREF1078_RS08720 0.14 -0.4 330,067 + HMPREF1078_RS08720 0.14 +0.4 330,076 - HMPREF1078_RS08720 0.15 -1.0 330,076 - HMPREF1078_RS08720 0.15 -1.6 330,138 + HMPREF1078_RS08720 0.24 -0.0 330,138 + HMPREF1078_RS08720 0.24 -1.3 330,138 + HMPREF1078_RS08720 0.24 -3.0 330,138 + HMPREF1078_RS08720 0.24 +0.5 330,140 + HMPREF1078_RS08720 0.24 +1.1 330,140 + HMPREF1078_RS08720 0.24 +1.2 330,186 + HMPREF1078_RS08720 0.31 +1.4 330,206 + HMPREF1078_RS08720 0.34 +0.3 330,207 - HMPREF1078_RS08720 0.34 -2.4 330,249 + HMPREF1078_RS08720 0.40 -0.7 330,257 + HMPREF1078_RS08720 0.41 +1.7 330,262 + HMPREF1078_RS08720 0.42 -0.2 330,262 + HMPREF1078_RS08720 0.42 +0.2 330,262 + HMPREF1078_RS08720 0.42 -0.6 330,263 - HMPREF1078_RS08720 0.42 +0.0 330,263 - HMPREF1078_RS08720 0.42 +2.3 330,265 + HMPREF1078_RS08720 0.42 -0.0 330,265 + HMPREF1078_RS08720 0.42 -0.5 330,280 - HMPREF1078_RS08720 0.45 +0.0 330,280 - HMPREF1078_RS08720 0.45 -0.0 330,313 + HMPREF1078_RS08720 0.49 +1.0 330,313 + HMPREF1078_RS08720 0.49 +1.9 330,314 - HMPREF1078_RS08720 0.49 -0.0 330,314 - HMPREF1078_RS08720 0.49 -0.6 330,314 - HMPREF1078_RS08720 0.49 -0.4 330,315 + HMPREF1078_RS08720 0.50 +0.8 330,315 + HMPREF1078_RS08720 0.50 +0.5 330,355 - HMPREF1078_RS08720 0.55 -0.2 330,513 + HMPREF1078_RS08720 0.78 +0.6 330,514 - HMPREF1078_RS08720 0.78 -1.0 330,599 - -1.5 330,599 - -3.4 330,601 + +0.1 330,601 + +0.1 330,603 + -2.0 330,603 + +0.1 330,649 + -1.4 330,650 - -3.4 330,661 + -1.0 330,661 + -0.6 330,708 + -1.0 330,787 + -0.4 330,787 + -0.1 330,787 + -0.9 330,787 + -1.2 330,787 + +0.6 330,787 + +1.8 330,787 + +0.2 330,787 + +0.5 330,787 + -0.6 330,788 - -0.6 330,788 - -0.5 330,788 - -0.6 330,788 - -0.8 330,788 - -0.2 330,788 - -0.1 330,788 - +0.5 330,788 - -2.5 330,788 - -0.6 330,788 - +0.4 330,788 - -0.7 330,820 + -0.0 330,821 - -1.5 330,874 - -0.2 330,874 - +0.6 330,874 - +0.3 330,885 + +1.1
Or see this region's nucleotide sequence