Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08650 and HMPREF1078_RS08655 are separated by 74 nucleotides HMPREF1078_RS08655 and HMPREF1078_RS08660 are separated by 11 nucleotides HMPREF1078_RS08660 and HMPREF1078_RS08665 are separated by 6 nucleotides HMPREF1078_RS08665 and HMPREF1078_RS08670 overlap by 29 nucleotides
HMPREF1078_RS08650: HMPREF1078_RS08650 - helix-turn-helix domain-containing protein, at 314,524 to 315,336
_RS08650
HMPREF1078_RS08655: HMPREF1078_RS08655 - pyridoxamine 5'-phosphate oxidase family protein, at 315,411 to 315,812
_RS08655
HMPREF1078_RS08660: HMPREF1078_RS08660 - glycosyltransferase family 2 protein, at 315,824 to 316,756
_RS08660
HMPREF1078_RS08665: HMPREF1078_RS08665 - GtrA family protein, at 316,763 to 317,146
_RS08665
HMPREF1078_RS08670: HMPREF1078_RS08670 - hypothetical protein, at 317,118 to 317,876
_RS08670
Position (kb) 315
316
317 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 314.856 kb on - strand, within HMPREF1078_RS08650 at 314.907 kb on - strand, within HMPREF1078_RS08650 at 314.924 kb on + strand, within HMPREF1078_RS08650 at 314.981 kb on - strand, within HMPREF1078_RS08650 at 314.981 kb on - strand, within HMPREF1078_RS08650 at 315.109 kb on + strand, within HMPREF1078_RS08650 at 315.109 kb on + strand, within HMPREF1078_RS08650 at 315.121 kb on - strand, within HMPREF1078_RS08650 at 315.134 kb on - strand, within HMPREF1078_RS08650 at 315.226 kb on + strand, within HMPREF1078_RS08650 at 315.227 kb on - strand, within HMPREF1078_RS08650 at 315.227 kb on - strand, within HMPREF1078_RS08650 at 315.325 kb on + strand at 315.326 kb on - strand at 315.326 kb on - strand at 315.390 kb on + strand at 315.394 kb on + strand at 315.395 kb on - strand at 315.471 kb on - strand, within HMPREF1078_RS08655 at 315.610 kb on + strand, within HMPREF1078_RS08655 at 315.611 kb on - strand, within HMPREF1078_RS08655 at 315.615 kb on + strand, within HMPREF1078_RS08655 at 315.616 kb on - strand, within HMPREF1078_RS08655 at 315.632 kb on + strand, within HMPREF1078_RS08655 at 315.632 kb on + strand, within HMPREF1078_RS08655 at 315.665 kb on + strand, within HMPREF1078_RS08655 at 315.745 kb on - strand, within HMPREF1078_RS08655 at 315.800 kb on + strand at 315.800 kb on + strand at 315.801 kb on - strand at 315.801 kb on - strand at 315.801 kb on - strand at 315.801 kb on - strand at 315.810 kb on + strand at 315.848 kb on - strand at 315.850 kb on + strand at 315.850 kb on + strand at 315.851 kb on - strand at 315.852 kb on + strand at 315.853 kb on - strand at 315.892 kb on + strand at 315.894 kb on + strand at 315.894 kb on + strand at 315.896 kb on - strand at 315.993 kb on + strand, within HMPREF1078_RS08660 at 315.993 kb on + strand, within HMPREF1078_RS08660 at 315.993 kb on + strand, within HMPREF1078_RS08660 at 315.994 kb on - strand, within HMPREF1078_RS08660 at 315.995 kb on + strand, within HMPREF1078_RS08660 at 316.005 kb on - strand, within HMPREF1078_RS08660 at 316.009 kb on + strand, within HMPREF1078_RS08660 at 316.010 kb on - strand, within HMPREF1078_RS08660 at 316.049 kb on - strand, within HMPREF1078_RS08660 at 316.094 kb on - strand, within HMPREF1078_RS08660 at 316.099 kb on + strand, within HMPREF1078_RS08660 at 316.156 kb on + strand, within HMPREF1078_RS08660 at 316.156 kb on + strand, within HMPREF1078_RS08660 at 316.156 kb on + strand, within HMPREF1078_RS08660 at 316.174 kb on - strand, within HMPREF1078_RS08660 at 316.274 kb on + strand, within HMPREF1078_RS08660 at 316.275 kb on - strand, within HMPREF1078_RS08660 at 316.294 kb on + strand, within HMPREF1078_RS08660 at 316.295 kb on - strand, within HMPREF1078_RS08660 at 316.295 kb on - strand, within HMPREF1078_RS08660 at 316.334 kb on - strand, within HMPREF1078_RS08660 at 316.334 kb on - strand, within HMPREF1078_RS08660 at 316.338 kb on + strand, within HMPREF1078_RS08660 at 316.401 kb on + strand, within HMPREF1078_RS08660 at 316.516 kb on + strand, within HMPREF1078_RS08660 at 316.641 kb on + strand, within HMPREF1078_RS08660 at 316.642 kb on - strand, within HMPREF1078_RS08660 at 316.669 kb on + strand at 316.669 kb on + strand at 316.669 kb on + strand at 316.669 kb on + strand at 316.669 kb on + strand at 316.670 kb on - strand at 316.723 kb on + strand at 316.725 kb on + strand at 316.737 kb on - strand at 316.777 kb on + strand at 316.786 kb on + strand at 316.787 kb on - strand at 316.813 kb on - strand, within HMPREF1078_RS08665 at 316.826 kb on + strand, within HMPREF1078_RS08665 at 316.838 kb on - strand, within HMPREF1078_RS08665 at 316.838 kb on - strand, within HMPREF1078_RS08665 at 316.838 kb on - strand, within HMPREF1078_RS08665 at 316.840 kb on - strand, within HMPREF1078_RS08665 at 316.840 kb on - strand, within HMPREF1078_RS08665 at 316.840 kb on - strand, within HMPREF1078_RS08665 at 316.840 kb on - strand, within HMPREF1078_RS08665 at 316.861 kb on - strand, within HMPREF1078_RS08665 at 316.876 kb on - strand, within HMPREF1078_RS08665 at 316.881 kb on - strand, within HMPREF1078_RS08665 at 316.903 kb on - strand, within HMPREF1078_RS08665 at 316.903 kb on - strand, within HMPREF1078_RS08665 at 316.979 kb on - strand, within HMPREF1078_RS08665 at 316.985 kb on + strand, within HMPREF1078_RS08665 at 316.986 kb on - strand, within HMPREF1078_RS08665 at 316.988 kb on - strand, within HMPREF1078_RS08665 at 316.988 kb on - strand, within HMPREF1078_RS08665 at 316.993 kb on + strand, within HMPREF1078_RS08665 at 316.994 kb on - strand, within HMPREF1078_RS08665 at 317.009 kb on + strand, within HMPREF1078_RS08665 at 317.010 kb on - strand, within HMPREF1078_RS08665 at 317.010 kb on - strand, within HMPREF1078_RS08665 at 317.010 kb on - strand, within HMPREF1078_RS08665 at 317.013 kb on + strand, within HMPREF1078_RS08665 at 317.013 kb on + strand, within HMPREF1078_RS08665 at 317.013 kb on + strand, within HMPREF1078_RS08665 at 317.023 kb on + strand, within HMPREF1078_RS08665 at 317.093 kb on - strand, within HMPREF1078_RS08665 at 317.093 kb on - strand, within HMPREF1078_RS08665 at 317.093 kb on - strand, within HMPREF1078_RS08665 at 317.095 kb on + strand, within HMPREF1078_RS08665 at 317.096 kb on - strand, within HMPREF1078_RS08665 at 317.110 kb on + strand at 317.111 kb on - strand at 317.111 kb on - strand at 317.115 kb on + strand at 317.115 kb on + strand at 317.116 kb on - strand at 317.323 kb on + strand, within HMPREF1078_RS08670 at 317.365 kb on + strand, within HMPREF1078_RS08670 at 317.398 kb on + strand, within HMPREF1078_RS08670 at 317.441 kb on - strand, within HMPREF1078_RS08670 at 317.483 kb on + strand, within HMPREF1078_RS08670 at 317.483 kb on + strand, within HMPREF1078_RS08670 at 317.483 kb on + strand, within HMPREF1078_RS08670 at 317.485 kb on + strand, within HMPREF1078_RS08670 at 317.546 kb on + strand, within HMPREF1078_RS08670 at 317.546 kb on + strand, within HMPREF1078_RS08670 at 317.547 kb on - strand, within HMPREF1078_RS08670 at 317.547 kb on - strand, within HMPREF1078_RS08670 at 317.547 kb on - strand, within HMPREF1078_RS08670 at 317.548 kb on + strand, within HMPREF1078_RS08670 at 317.549 kb on - strand, within HMPREF1078_RS08670 at 317.549 kb on - strand, within HMPREF1078_RS08670 at 317.606 kb on - strand, within HMPREF1078_RS08670 at 317.606 kb on - strand, within HMPREF1078_RS08670 at 317.613 kb on + strand, within HMPREF1078_RS08670 at 317.614 kb on - strand, within HMPREF1078_RS08670 at 317.637 kb on - strand, within HMPREF1078_RS08670 at 317.637 kb on - strand, within HMPREF1078_RS08670 at 317.637 kb on - strand, within HMPREF1078_RS08670 at 317.643 kb on + strand, within HMPREF1078_RS08670 at 317.643 kb on + strand, within HMPREF1078_RS08670 at 317.644 kb on - strand, within HMPREF1078_RS08670 at 317.644 kb on - strand, within HMPREF1078_RS08670 at 317.647 kb on + strand, within HMPREF1078_RS08670 at 317.647 kb on + strand, within HMPREF1078_RS08670 at 317.647 kb on + strand, within HMPREF1078_RS08670 at 317.648 kb on - strand, within HMPREF1078_RS08670 at 317.648 kb on - strand, within HMPREF1078_RS08670 at 317.655 kb on - strand, within HMPREF1078_RS08670 at 317.655 kb on - strand, within HMPREF1078_RS08670 at 317.730 kb on - strand, within HMPREF1078_RS08670
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 314,856 - HMPREF1078_RS08650 0.41 -1.1 314,907 - HMPREF1078_RS08650 0.47 +0.6 314,924 + HMPREF1078_RS08650 0.49 +0.2 314,981 - HMPREF1078_RS08650 0.56 +1.9 314,981 - HMPREF1078_RS08650 0.56 +0.9 315,109 + HMPREF1078_RS08650 0.72 +0.2 315,109 + HMPREF1078_RS08650 0.72 -0.3 315,121 - HMPREF1078_RS08650 0.73 -0.3 315,134 - HMPREF1078_RS08650 0.75 +2.2 315,226 + HMPREF1078_RS08650 0.86 -1.1 315,227 - HMPREF1078_RS08650 0.86 -1.4 315,227 - HMPREF1078_RS08650 0.86 +0.1 315,325 + +0.7 315,326 - -1.0 315,326 - -1.4 315,390 + -0.3 315,394 + +1.4 315,395 - -0.7 315,471 - HMPREF1078_RS08655 0.15 +0.7 315,610 + HMPREF1078_RS08655 0.50 +0.8 315,611 - HMPREF1078_RS08655 0.50 -0.2 315,615 + HMPREF1078_RS08655 0.51 -1.0 315,616 - HMPREF1078_RS08655 0.51 -0.0 315,632 + HMPREF1078_RS08655 0.55 +1.0 315,632 + HMPREF1078_RS08655 0.55 -1.4 315,665 + HMPREF1078_RS08655 0.63 -1.0 315,745 - HMPREF1078_RS08655 0.83 +0.1 315,800 + +0.2 315,800 + +0.2 315,801 - +1.1 315,801 - -0.0 315,801 - -0.6 315,801 - +0.7 315,810 + +0.1 315,848 - -1.9 315,850 + -3.0 315,850 + -2.0 315,851 - -0.6 315,852 + -2.4 315,853 - -1.9 315,892 + -1.0 315,894 + -0.0 315,894 + -1.4 315,896 - -2.6 315,993 + HMPREF1078_RS08660 0.18 -1.4 315,993 + HMPREF1078_RS08660 0.18 -2.0 315,993 + HMPREF1078_RS08660 0.18 -0.6 315,994 - HMPREF1078_RS08660 0.18 -2.4 315,995 + HMPREF1078_RS08660 0.18 -1.9 316,005 - HMPREF1078_RS08660 0.19 +0.2 316,009 + HMPREF1078_RS08660 0.20 -1.0 316,010 - HMPREF1078_RS08660 0.20 -0.0 316,049 - HMPREF1078_RS08660 0.24 -3.9 316,094 - HMPREF1078_RS08660 0.29 -2.7 316,099 + HMPREF1078_RS08660 0.29 -3.4 316,156 + HMPREF1078_RS08660 0.36 -3.6 316,156 + HMPREF1078_RS08660 0.36 -2.7 316,156 + HMPREF1078_RS08660 0.36 +1.0 316,174 - HMPREF1078_RS08660 0.38 -0.6 316,274 + HMPREF1078_RS08660 0.48 -1.4 316,275 - HMPREF1078_RS08660 0.48 -2.0 316,294 + HMPREF1078_RS08660 0.50 +1.0 316,295 - HMPREF1078_RS08660 0.50 +1.0 316,295 - HMPREF1078_RS08660 0.50 +0.1 316,334 - HMPREF1078_RS08660 0.55 -2.2 316,334 - HMPREF1078_RS08660 0.55 -1.4 316,338 + HMPREF1078_RS08660 0.55 -2.2 316,401 + HMPREF1078_RS08660 0.62 -2.9 316,516 + HMPREF1078_RS08660 0.74 -2.5 316,641 + HMPREF1078_RS08660 0.88 -2.5 316,642 - HMPREF1078_RS08660 0.88 -0.9 316,669 + -2.5 316,669 + -2.2 316,669 + -0.4 316,669 + -1.9 316,669 + -0.4 316,670 - -3.1 316,723 + -0.0 316,725 + -0.6 316,737 - +2.0 316,777 + -0.9 316,786 + +1.0 316,787 - +0.5 316,813 - HMPREF1078_RS08665 0.13 -0.4 316,826 + HMPREF1078_RS08665 0.16 -2.2 316,838 - HMPREF1078_RS08665 0.20 -1.0 316,838 - HMPREF1078_RS08665 0.20 -1.5 316,838 - HMPREF1078_RS08665 0.20 -1.9 316,840 - HMPREF1078_RS08665 0.20 -1.6 316,840 - HMPREF1078_RS08665 0.20 +0.1 316,840 - HMPREF1078_RS08665 0.20 +0.4 316,840 - HMPREF1078_RS08665 0.20 -1.6 316,861 - HMPREF1078_RS08665 0.26 +0.4 316,876 - HMPREF1078_RS08665 0.29 +1.2 316,881 - HMPREF1078_RS08665 0.31 -1.6 316,903 - HMPREF1078_RS08665 0.36 -0.6 316,903 - HMPREF1078_RS08665 0.36 -0.4 316,979 - HMPREF1078_RS08665 0.56 -0.6 316,985 + HMPREF1078_RS08665 0.58 +1.0 316,986 - HMPREF1078_RS08665 0.58 +0.6 316,988 - HMPREF1078_RS08665 0.59 -0.9 316,988 - HMPREF1078_RS08665 0.59 -1.3 316,993 + HMPREF1078_RS08665 0.60 -1.8 316,994 - HMPREF1078_RS08665 0.60 -1.1 317,009 + HMPREF1078_RS08665 0.64 -1.0 317,010 - HMPREF1078_RS08665 0.64 -0.2 317,010 - HMPREF1078_RS08665 0.64 -1.9 317,010 - HMPREF1078_RS08665 0.64 +0.1 317,013 + HMPREF1078_RS08665 0.65 -1.0 317,013 + HMPREF1078_RS08665 0.65 -1.2 317,013 + HMPREF1078_RS08665 0.65 +0.1 317,023 + HMPREF1078_RS08665 0.68 -2.3 317,093 - HMPREF1078_RS08665 0.86 -2.4 317,093 - HMPREF1078_RS08665 0.86 -0.0 317,093 - HMPREF1078_RS08665 0.86 -0.3 317,095 + HMPREF1078_RS08665 0.86 -0.0 317,096 - HMPREF1078_RS08665 0.87 +1.0 317,110 + -2.6 317,111 - +1.0 317,111 - -0.5 317,115 + -0.6 317,115 + -1.4 317,116 - -0.6 317,323 + HMPREF1078_RS08670 0.27 -0.6 317,365 + HMPREF1078_RS08670 0.33 -2.0 317,398 + HMPREF1078_RS08670 0.37 -1.4 317,441 - HMPREF1078_RS08670 0.43 -0.6 317,483 + HMPREF1078_RS08670 0.48 -2.5 317,483 + HMPREF1078_RS08670 0.48 -0.0 317,483 + HMPREF1078_RS08670 0.48 -0.0 317,485 + HMPREF1078_RS08670 0.48 -1.5 317,546 + HMPREF1078_RS08670 0.56 -1.9 317,546 + HMPREF1078_RS08670 0.56 -0.6 317,547 - HMPREF1078_RS08670 0.57 -2.3 317,547 - HMPREF1078_RS08670 0.57 -1.4 317,547 - HMPREF1078_RS08670 0.57 +1.5 317,548 + HMPREF1078_RS08670 0.57 -1.9 317,549 - HMPREF1078_RS08670 0.57 +0.6 317,549 - HMPREF1078_RS08670 0.57 +0.2 317,606 - HMPREF1078_RS08670 0.64 +1.1 317,606 - HMPREF1078_RS08670 0.64 -1.5 317,613 + HMPREF1078_RS08670 0.65 -2.6 317,614 - HMPREF1078_RS08670 0.65 -0.0 317,637 - HMPREF1078_RS08670 0.68 -1.1 317,637 - HMPREF1078_RS08670 0.68 +0.2 317,637 - HMPREF1078_RS08670 0.68 +0.4 317,643 + HMPREF1078_RS08670 0.69 -2.6 317,643 + HMPREF1078_RS08670 0.69 -2.5 317,644 - HMPREF1078_RS08670 0.69 -0.6 317,644 - HMPREF1078_RS08670 0.69 -2.0 317,647 + HMPREF1078_RS08670 0.70 -3.0 317,647 + HMPREF1078_RS08670 0.70 -2.5 317,647 + HMPREF1078_RS08670 0.70 -3.1 317,648 - HMPREF1078_RS08670 0.70 -0.9 317,648 - HMPREF1078_RS08670 0.70 -0.0 317,655 - HMPREF1078_RS08670 0.71 +1.5 317,655 - HMPREF1078_RS08670 0.71 +0.8 317,730 - HMPREF1078_RS08670 0.81 +0.0
Or see this region's nucleotide sequence