Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS08085

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS08080 and HMPREF1078_RS08085 are separated by 90 nucleotidesHMPREF1078_RS08085 and HMPREF1078_RS08090 are separated by 46 nucleotides HMPREF1078_RS08080: HMPREF1078_RS08080 - ThuA domain-containing protein, at 179,647 to 180,561 _RS08080 HMPREF1078_RS08085: HMPREF1078_RS08085 - hypothetical protein, at 180,652 to 181,515 _RS08085 HMPREF1078_RS08090: HMPREF1078_RS08090 - ClC family H(+)/Cl(-) exchange transporter, at 181,562 to 183,103 _RS08090 Position (kb) 180 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 179.660 kb on + strandat 179.682 kb on + strandat 179.682 kb on + strandat 179.683 kb on - strandat 179.788 kb on + strand, within HMPREF1078_RS08080at 179.788 kb on + strand, within HMPREF1078_RS08080at 179.789 kb on - strand, within HMPREF1078_RS08080at 179.789 kb on - strand, within HMPREF1078_RS08080at 179.789 kb on - strand, within HMPREF1078_RS08080at 179.789 kb on - strand, within HMPREF1078_RS08080at 179.790 kb on + strand, within HMPREF1078_RS08080at 179.791 kb on - strand, within HMPREF1078_RS08080at 179.791 kb on - strand, within HMPREF1078_RS08080at 179.793 kb on + strand, within HMPREF1078_RS08080at 179.803 kb on - strand, within HMPREF1078_RS08080at 179.862 kb on + strand, within HMPREF1078_RS08080at 179.955 kb on + strand, within HMPREF1078_RS08080at 179.955 kb on + strand, within HMPREF1078_RS08080at 180.044 kb on + strand, within HMPREF1078_RS08080at 180.045 kb on - strand, within HMPREF1078_RS08080at 180.045 kb on - strand, within HMPREF1078_RS08080at 180.117 kb on - strand, within HMPREF1078_RS08080at 180.122 kb on + strand, within HMPREF1078_RS08080at 180.123 kb on - strand, within HMPREF1078_RS08080at 180.123 kb on - strand, within HMPREF1078_RS08080at 180.248 kb on + strand, within HMPREF1078_RS08080at 180.295 kb on - strand, within HMPREF1078_RS08080at 180.307 kb on + strand, within HMPREF1078_RS08080at 180.325 kb on - strand, within HMPREF1078_RS08080at 180.349 kb on - strand, within HMPREF1078_RS08080at 180.349 kb on - strand, within HMPREF1078_RS08080at 180.445 kb on - strand, within HMPREF1078_RS08080at 180.445 kb on - strand, within HMPREF1078_RS08080at 180.501 kb on + strandat 180.503 kb on + strandat 180.569 kb on + strandat 180.570 kb on - strandat 180.603 kb on - strandat 180.603 kb on - strandat 180.611 kb on - strandat 180.617 kb on + strandat 180.617 kb on + strandat 180.618 kb on - strandat 180.621 kb on + strandat 180.683 kb on + strandat 180.683 kb on + strandat 180.683 kb on + strandat 180.683 kb on + strandat 180.684 kb on - strandat 180.692 kb on + strandat 180.692 kb on + strandat 180.712 kb on + strandat 180.713 kb on - strandat 180.755 kb on + strand, within HMPREF1078_RS08085at 180.755 kb on + strand, within HMPREF1078_RS08085at 180.758 kb on - strand, within HMPREF1078_RS08085at 180.758 kb on - strand, within HMPREF1078_RS08085at 180.758 kb on - strand, within HMPREF1078_RS08085at 180.860 kb on - strand, within HMPREF1078_RS08085at 180.860 kb on - strand, within HMPREF1078_RS08085at 180.864 kb on + strand, within HMPREF1078_RS08085at 180.864 kb on + strand, within HMPREF1078_RS08085at 180.865 kb on - strand, within HMPREF1078_RS08085at 181.024 kb on + strand, within HMPREF1078_RS08085at 181.175 kb on + strand, within HMPREF1078_RS08085at 181.175 kb on + strand, within HMPREF1078_RS08085at 181.228 kb on - strand, within HMPREF1078_RS08085at 181.250 kb on - strand, within HMPREF1078_RS08085at 181.250 kb on - strand, within HMPREF1078_RS08085at 181.301 kb on - strand, within HMPREF1078_RS08085at 181.324 kb on + strand, within HMPREF1078_RS08085at 181.395 kb on - strand, within HMPREF1078_RS08085at 181.395 kb on - strand, within HMPREF1078_RS08085at 181.395 kb on - strand, within HMPREF1078_RS08085at 181.452 kb on + strandat 181.478 kb on - strandat 181.498 kb on + strandat 181.500 kb on + strandat 181.500 kb on + strandat 181.501 kb on - strandat 181.502 kb on + strandat 181.611 kb on - strandat 181.662 kb on - strandat 181.667 kb on + strandat 181.681 kb on - strandat 181.691 kb on - strandat 181.691 kb on - strandat 181.802 kb on + strand, within HMPREF1078_RS08090at 181.859 kb on + strand, within HMPREF1078_RS08090at 181.860 kb on - strand, within HMPREF1078_RS08090at 181.954 kb on - strand, within HMPREF1078_RS08090at 181.967 kb on + strand, within HMPREF1078_RS08090at 181.967 kb on + strand, within HMPREF1078_RS08090at 181.971 kb on + strand, within HMPREF1078_RS08090at 181.971 kb on + strand, within HMPREF1078_RS08090at 181.972 kb on - strand, within HMPREF1078_RS08090at 181.972 kb on - strand, within HMPREF1078_RS08090at 182.000 kb on - strand, within HMPREF1078_RS08090at 182.211 kb on + strand, within HMPREF1078_RS08090at 182.211 kb on + strand, within HMPREF1078_RS08090at 182.249 kb on - strand, within HMPREF1078_RS08090at 182.258 kb on + strand, within HMPREF1078_RS08090at 182.258 kb on + strand, within HMPREF1078_RS08090at 182.258 kb on + strand, within HMPREF1078_RS08090at 182.259 kb on - strand, within HMPREF1078_RS08090at 182.259 kb on - strand, within HMPREF1078_RS08090at 182.260 kb on + strand, within HMPREF1078_RS08090at 182.300 kb on + strand, within HMPREF1078_RS08090at 182.301 kb on - strand, within HMPREF1078_RS08090at 182.301 kb on - strand, within HMPREF1078_RS08090at 182.316 kb on + strand, within HMPREF1078_RS08090at 182.318 kb on + strand, within HMPREF1078_RS08090at 182.357 kb on + strand, within HMPREF1078_RS08090at 182.390 kb on + strand, within HMPREF1078_RS08090at 182.390 kb on + strand, within HMPREF1078_RS08090at 182.477 kb on + strand, within HMPREF1078_RS08090at 182.477 kb on + strand, within HMPREF1078_RS08090at 182.511 kb on + strand, within HMPREF1078_RS08090at 182.515 kb on + strand, within HMPREF1078_RS08090

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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179,660 + -0.6
179,682 + +1.0
179,682 + -0.1
179,683 - -1.7
179,788 + HMPREF1078_RS08080 0.15 +0.5
179,788 + HMPREF1078_RS08080 0.15 -1.6
179,789 - HMPREF1078_RS08080 0.16 -2.0
179,789 - HMPREF1078_RS08080 0.16 +2.5
179,789 - HMPREF1078_RS08080 0.16 -0.0
179,789 - HMPREF1078_RS08080 0.16 -1.5
179,790 + HMPREF1078_RS08080 0.16 +1.0
179,791 - HMPREF1078_RS08080 0.16 +0.2
179,791 - HMPREF1078_RS08080 0.16 +0.2
179,793 + HMPREF1078_RS08080 0.16 +1.0
179,803 - HMPREF1078_RS08080 0.17 +0.8
179,862 + HMPREF1078_RS08080 0.23 +0.6
179,955 + HMPREF1078_RS08080 0.34 -0.9
179,955 + HMPREF1078_RS08080 0.34 +0.8
180,044 + HMPREF1078_RS08080 0.43 -2.2
180,045 - HMPREF1078_RS08080 0.43 -0.3
180,045 - HMPREF1078_RS08080 0.43 -0.7
180,117 - HMPREF1078_RS08080 0.51 +1.3
180,122 + HMPREF1078_RS08080 0.52 -0.6
180,123 - HMPREF1078_RS08080 0.52 +2.4
180,123 - HMPREF1078_RS08080 0.52 +1.6
180,248 + HMPREF1078_RS08080 0.66 +2.4
180,295 - HMPREF1078_RS08080 0.71 -2.0
180,307 + HMPREF1078_RS08080 0.72 -0.1
180,325 - HMPREF1078_RS08080 0.74 +1.0
180,349 - HMPREF1078_RS08080 0.77 +1.1
180,349 - HMPREF1078_RS08080 0.77 -0.5
180,445 - HMPREF1078_RS08080 0.87 -1.3
180,445 - HMPREF1078_RS08080 0.87 -2.0
180,501 + -0.3
180,503 + +0.6
180,569 + +0.4
180,570 - -1.3
180,603 - -0.0
180,603 - -0.2
180,611 - +0.5
180,617 + -1.4
180,617 + +0.7
180,618 - -2.6
180,621 + -0.0
180,683 + -0.4
180,683 + +0.8
180,683 + +0.1
180,683 + -0.0
180,684 - +1.0
180,692 + +1.3
180,692 + +0.3
180,712 + -0.1
180,713 - +0.2
180,755 + HMPREF1078_RS08085 0.12 -0.0
180,755 + HMPREF1078_RS08085 0.12 -0.4
180,758 - HMPREF1078_RS08085 0.12 -0.6
180,758 - HMPREF1078_RS08085 0.12 -0.7
180,758 - HMPREF1078_RS08085 0.12 +0.4
180,860 - HMPREF1078_RS08085 0.24 -1.2
180,860 - HMPREF1078_RS08085 0.24 +2.3
180,864 + HMPREF1078_RS08085 0.25 -1.4
180,864 + HMPREF1078_RS08085 0.25 -0.6
180,865 - HMPREF1078_RS08085 0.25 +0.7
181,024 + HMPREF1078_RS08085 0.43 -0.6
181,175 + HMPREF1078_RS08085 0.61 +0.6
181,175 + HMPREF1078_RS08085 0.61 +1.0
181,228 - HMPREF1078_RS08085 0.67 +0.8
181,250 - HMPREF1078_RS08085 0.69 -0.0
181,250 - HMPREF1078_RS08085 0.69 -0.6
181,301 - HMPREF1078_RS08085 0.75 +0.4
181,324 + HMPREF1078_RS08085 0.78 +0.6
181,395 - HMPREF1078_RS08085 0.86 +1.2
181,395 - HMPREF1078_RS08085 0.86 +1.0
181,395 - HMPREF1078_RS08085 0.86 -0.6
181,452 + +0.2
181,478 - -1.4
181,498 + +0.9
181,500 + -0.6
181,500 + -0.3
181,501 - -1.4
181,502 + -0.0
181,611 - +1.0
181,662 - -0.6
181,667 + -0.6
181,681 - -1.8
181,691 - +0.7
181,691 - +0.6
181,802 + HMPREF1078_RS08090 0.16 +0.5
181,859 + HMPREF1078_RS08090 0.19 +1.1
181,860 - HMPREF1078_RS08090 0.19 +0.4
181,954 - HMPREF1078_RS08090 0.25 +0.2
181,967 + HMPREF1078_RS08090 0.26 -0.5
181,967 + HMPREF1078_RS08090 0.26 -0.0
181,971 + HMPREF1078_RS08090 0.27 -1.0
181,971 + HMPREF1078_RS08090 0.27 +0.1
181,972 - HMPREF1078_RS08090 0.27 +0.4
181,972 - HMPREF1078_RS08090 0.27 -1.0
182,000 - HMPREF1078_RS08090 0.28 -0.6
182,211 + HMPREF1078_RS08090 0.42 -1.8
182,211 + HMPREF1078_RS08090 0.42 -0.0
182,249 - HMPREF1078_RS08090 0.45 -0.2
182,258 + HMPREF1078_RS08090 0.45 -0.6
182,258 + HMPREF1078_RS08090 0.45 +0.4
182,258 + HMPREF1078_RS08090 0.45 +3.8
182,259 - HMPREF1078_RS08090 0.45 -1.6
182,259 - HMPREF1078_RS08090 0.45 +1.0
182,260 + HMPREF1078_RS08090 0.45 -0.1
182,300 + HMPREF1078_RS08090 0.48 -1.0
182,301 - HMPREF1078_RS08090 0.48 -3.1
182,301 - HMPREF1078_RS08090 0.48 +0.4
182,316 + HMPREF1078_RS08090 0.49 -0.6
182,318 + HMPREF1078_RS08090 0.49 +1.2
182,357 + HMPREF1078_RS08090 0.52 +0.7
182,390 + HMPREF1078_RS08090 0.54 -0.4
182,390 + HMPREF1078_RS08090 0.54 -0.7
182,477 + HMPREF1078_RS08090 0.59 -0.6
182,477 + HMPREF1078_RS08090 0.59 -0.4
182,511 + HMPREF1078_RS08090 0.62 -0.6
182,515 + HMPREF1078_RS08090 0.62 -0.6

Or see this region's nucleotide sequence