Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08045 and HMPREF1078_RS08050 are separated by 167 nucleotides HMPREF1078_RS08050 and HMPREF1078_RS08055 are separated by 4 nucleotides HMPREF1078_RS08055 and HMPREF1078_RS08060 are separated by 134 nucleotides
HMPREF1078_RS08045: HMPREF1078_RS08045 - L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha, at 171,718 to 173,010
_RS08045
HMPREF1078_RS08050: HMPREF1078_RS08050 - membrane protein, at 173,178 to 173,468
_RS08050
HMPREF1078_RS08055: HMPREF1078_RS08055 - glycine zipper family protein, at 173,473 to 174,135
_RS08055
HMPREF1078_RS08060: HMPREF1078_RS08060 - AAA domain-containing protein, at 174,270 to 176,189
_RS08060
Position (kb) 173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 172.293 kb on + strand, within HMPREF1078_RS08045 at 172.294 kb on - strand, within HMPREF1078_RS08045 at 172.296 kb on - strand, within HMPREF1078_RS08045 at 172.296 kb on - strand, within HMPREF1078_RS08045 at 172.313 kb on + strand, within HMPREF1078_RS08045 at 172.313 kb on + strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.326 kb on - strand, within HMPREF1078_RS08045 at 172.326 kb on - strand, within HMPREF1078_RS08045 at 172.353 kb on + strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.461 kb on - strand, within HMPREF1078_RS08045 at 172.468 kb on - strand, within HMPREF1078_RS08045 at 172.468 kb on - strand, within HMPREF1078_RS08045 at 172.640 kb on + strand, within HMPREF1078_RS08045 at 172.640 kb on + strand, within HMPREF1078_RS08045 at 172.641 kb on - strand, within HMPREF1078_RS08045 at 172.664 kb on - strand, within HMPREF1078_RS08045 at 172.684 kb on - strand, within HMPREF1078_RS08045 at 172.738 kb on + strand, within HMPREF1078_RS08045 at 172.751 kb on + strand, within HMPREF1078_RS08045 at 172.773 kb on + strand, within HMPREF1078_RS08045 at 172.773 kb on + strand, within HMPREF1078_RS08045 at 172.791 kb on + strand, within HMPREF1078_RS08045 at 172.792 kb on - strand, within HMPREF1078_RS08045 at 172.792 kb on - strand, within HMPREF1078_RS08045 at 172.792 kb on - strand, within HMPREF1078_RS08045 at 172.942 kb on - strand at 172.972 kb on + strand at 172.973 kb on - strand at 172.975 kb on + strand at 172.975 kb on + strand at 173.004 kb on + strand at 173.004 kb on + strand at 173.016 kb on + strand at 173.017 kb on - strand at 173.046 kb on + strand at 173.067 kb on + strand at 173.067 kb on + strand at 173.067 kb on + strand at 173.071 kb on + strand at 173.090 kb on - strand at 173.093 kb on + strand at 173.094 kb on - strand at 173.159 kb on - strand at 173.197 kb on + strand at 173.205 kb on - strand at 173.205 kb on - strand at 173.205 kb on - strand at 173.209 kb on + strand, within HMPREF1078_RS08050 at 173.209 kb on + strand, within HMPREF1078_RS08050 at 173.309 kb on - strand, within HMPREF1078_RS08050 at 173.316 kb on - strand, within HMPREF1078_RS08050 at 173.356 kb on + strand, within HMPREF1078_RS08050 at 173.356 kb on + strand, within HMPREF1078_RS08050 at 173.356 kb on + strand, within HMPREF1078_RS08050 at 173.357 kb on - strand, within HMPREF1078_RS08050 at 173.357 kb on - strand, within HMPREF1078_RS08050 at 173.357 kb on - strand, within HMPREF1078_RS08050 at 173.395 kb on + strand, within HMPREF1078_RS08050 at 173.401 kb on + strand, within HMPREF1078_RS08050 at 173.408 kb on - strand, within HMPREF1078_RS08050 at 173.413 kb on + strand, within HMPREF1078_RS08050 at 173.414 kb on - strand, within HMPREF1078_RS08050 at 173.414 kb on - strand, within HMPREF1078_RS08050 at 173.414 kb on - strand, within HMPREF1078_RS08050 at 173.414 kb on - strand, within HMPREF1078_RS08050 at 173.422 kb on + strand, within HMPREF1078_RS08050 at 173.502 kb on + strand at 173.598 kb on + strand, within HMPREF1078_RS08055 at 173.605 kb on - strand, within HMPREF1078_RS08055 at 173.606 kb on + strand, within HMPREF1078_RS08055 at 173.606 kb on + strand, within HMPREF1078_RS08055 at 173.606 kb on + strand, within HMPREF1078_RS08055 at 173.607 kb on - strand, within HMPREF1078_RS08055 at 173.607 kb on - strand, within HMPREF1078_RS08055 at 173.614 kb on - strand, within HMPREF1078_RS08055 at 173.639 kb on - strand, within HMPREF1078_RS08055 at 173.746 kb on - strand, within HMPREF1078_RS08055 at 173.767 kb on + strand, within HMPREF1078_RS08055 at 173.808 kb on + strand, within HMPREF1078_RS08055 at 173.808 kb on + strand, within HMPREF1078_RS08055 at 173.854 kb on - strand, within HMPREF1078_RS08055 at 173.855 kb on + strand, within HMPREF1078_RS08055 at 173.856 kb on - strand, within HMPREF1078_RS08055 at 173.856 kb on - strand, within HMPREF1078_RS08055 at 173.856 kb on - strand, within HMPREF1078_RS08055 at 173.885 kb on - strand, within HMPREF1078_RS08055 at 173.898 kb on + strand, within HMPREF1078_RS08055 at 173.898 kb on + strand, within HMPREF1078_RS08055 at 173.898 kb on + strand, within HMPREF1078_RS08055 at 174.066 kb on + strand, within HMPREF1078_RS08055 at 174.109 kb on + strand at 174.118 kb on + strand at 174.118 kb on + strand at 174.237 kb on + strand at 174.238 kb on - strand at 174.316 kb on - strand at 174.316 kb on - strand at 174.357 kb on + strand at 174.358 kb on - strand at 174.417 kb on + strand at 174.441 kb on + strand at 174.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 172,293 + HMPREF1078_RS08045 0.44 -1.0 172,294 - HMPREF1078_RS08045 0.45 +1.4 172,296 - HMPREF1078_RS08045 0.45 +0.5 172,296 - HMPREF1078_RS08045 0.45 -0.0 172,313 + HMPREF1078_RS08045 0.46 -1.9 172,313 + HMPREF1078_RS08045 0.46 -0.2 172,314 - HMPREF1078_RS08045 0.46 -1.0 172,314 - HMPREF1078_RS08045 0.46 +1.2 172,314 - HMPREF1078_RS08045 0.46 +0.2 172,326 - HMPREF1078_RS08045 0.47 -1.6 172,326 - HMPREF1078_RS08045 0.47 -0.2 172,353 + HMPREF1078_RS08045 0.49 -2.6 172,354 - HMPREF1078_RS08045 0.49 -2.6 172,354 - HMPREF1078_RS08045 0.49 +1.0 172,354 - HMPREF1078_RS08045 0.49 +1.0 172,354 - HMPREF1078_RS08045 0.49 -0.0 172,461 - HMPREF1078_RS08045 0.57 +1.0 172,468 - HMPREF1078_RS08045 0.58 -0.0 172,468 - HMPREF1078_RS08045 0.58 -3.2 172,640 + HMPREF1078_RS08045 0.71 -3.3 172,640 + HMPREF1078_RS08045 0.71 -1.5 172,641 - HMPREF1078_RS08045 0.71 +0.4 172,664 - HMPREF1078_RS08045 0.73 +0.4 172,684 - HMPREF1078_RS08045 0.75 +1.4 172,738 + HMPREF1078_RS08045 0.79 +0.7 172,751 + HMPREF1078_RS08045 0.80 -0.6 172,773 + HMPREF1078_RS08045 0.82 -0.6 172,773 + HMPREF1078_RS08045 0.82 -0.4 172,791 + HMPREF1078_RS08045 0.83 -1.4 172,792 - HMPREF1078_RS08045 0.83 -2.1 172,792 - HMPREF1078_RS08045 0.83 -0.3 172,792 - HMPREF1078_RS08045 0.83 +0.5 172,942 - -0.6 172,972 + +2.3 172,973 - +0.4 172,975 + +0.7 172,975 + -0.3 173,004 + -1.9 173,004 + -0.5 173,016 + -1.9 173,017 - -0.0 173,046 + -0.1 173,067 + -0.0 173,067 + -2.7 173,067 + +0.2 173,071 + -2.0 173,090 - +2.0 173,093 + +0.4 173,094 - +0.7 173,159 - -2.7 173,197 + +0.8 173,205 - -1.6 173,205 - +1.3 173,205 - +0.8 173,209 + HMPREF1078_RS08050 0.11 -1.0 173,209 + HMPREF1078_RS08050 0.11 -1.0 173,309 - HMPREF1078_RS08050 0.45 -2.0 173,316 - HMPREF1078_RS08050 0.47 -1.0 173,356 + HMPREF1078_RS08050 0.61 -0.0 173,356 + HMPREF1078_RS08050 0.61 +0.6 173,356 + HMPREF1078_RS08050 0.61 -0.4 173,357 - HMPREF1078_RS08050 0.62 +1.0 173,357 - HMPREF1078_RS08050 0.62 +0.2 173,357 - HMPREF1078_RS08050 0.62 -0.9 173,395 + HMPREF1078_RS08050 0.75 -3.2 173,401 + HMPREF1078_RS08050 0.77 +0.4 173,408 - HMPREF1078_RS08050 0.79 -0.9 173,413 + HMPREF1078_RS08050 0.81 -0.8 173,414 - HMPREF1078_RS08050 0.81 -1.4 173,414 - HMPREF1078_RS08050 0.81 -0.8 173,414 - HMPREF1078_RS08050 0.81 -0.2 173,414 - HMPREF1078_RS08050 0.81 -0.9 173,422 + HMPREF1078_RS08050 0.84 +0.5 173,502 + +0.3 173,598 + HMPREF1078_RS08055 0.19 -0.8 173,605 - HMPREF1078_RS08055 0.20 +2.0 173,606 + HMPREF1078_RS08055 0.20 -0.6 173,606 + HMPREF1078_RS08055 0.20 -0.4 173,606 + HMPREF1078_RS08055 0.20 -0.6 173,607 - HMPREF1078_RS08055 0.20 -1.0 173,607 - HMPREF1078_RS08055 0.20 +0.4 173,614 - HMPREF1078_RS08055 0.21 +0.8 173,639 - HMPREF1078_RS08055 0.25 +0.2 173,746 - HMPREF1078_RS08055 0.41 +1.4 173,767 + HMPREF1078_RS08055 0.44 +1.2 173,808 + HMPREF1078_RS08055 0.51 -1.3 173,808 + HMPREF1078_RS08055 0.51 -0.3 173,854 - HMPREF1078_RS08055 0.57 +0.3 173,855 + HMPREF1078_RS08055 0.58 +1.2 173,856 - HMPREF1078_RS08055 0.58 -1.1 173,856 - HMPREF1078_RS08055 0.58 +1.0 173,856 - HMPREF1078_RS08055 0.58 -1.9 173,885 - HMPREF1078_RS08055 0.62 +0.6 173,898 + HMPREF1078_RS08055 0.64 +2.0 173,898 + HMPREF1078_RS08055 0.64 +2.1 173,898 + HMPREF1078_RS08055 0.64 -1.4 174,066 + HMPREF1078_RS08055 0.89 -1.4 174,109 + -0.5 174,118 + +1.0 174,118 + +1.4 174,237 + -0.0 174,238 - -1.9 174,316 - -0.0 174,316 - -0.0 174,357 + -0.6 174,358 - +1.8 174,417 + +0.2 174,441 + -0.5 174,442 - -2.2
Or see this region's nucleotide sequence