Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07775

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS07770 and HMPREF1078_RS07775 are separated by 96 nucleotidesHMPREF1078_RS07775 and HMPREF1078_RS07780 are separated by 3 nucleotidesHMPREF1078_RS07780 and HMPREF1078_RS07785 are separated by 141 nucleotides HMPREF1078_RS07770: HMPREF1078_RS07770 - GH92 family glycosyl hydrolase, at 98,411 to 100,633 _RS07770 HMPREF1078_RS07775: HMPREF1078_RS07775 - twin-arginine translocase subunit TatC, at 100,730 to 101,605 _RS07775 HMPREF1078_RS07780: HMPREF1078_RS07780 - twin-arginine translocase TatA/TatE family subunit, at 101,609 to 101,803 _RS07780 HMPREF1078_RS07785: HMPREF1078_RS07785 - ACP S-malonyltransferase, at 101,945 to 102,826 _RS07785 Position (kb) 100 101 102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 99.792 kb on + strand, within HMPREF1078_RS07770at 99.863 kb on - strand, within HMPREF1078_RS07770at 99.919 kb on + strand, within HMPREF1078_RS07770at 99.922 kb on - strand, within HMPREF1078_RS07770at 99.958 kb on + strand, within HMPREF1078_RS07770at 100.085 kb on + strand, within HMPREF1078_RS07770at 100.086 kb on - strand, within HMPREF1078_RS07770at 100.090 kb on - strand, within HMPREF1078_RS07770at 100.165 kb on + strand, within HMPREF1078_RS07770at 100.166 kb on - strand, within HMPREF1078_RS07770at 100.166 kb on - strand, within HMPREF1078_RS07770at 100.166 kb on - strand, within HMPREF1078_RS07770at 100.167 kb on + strand, within HMPREF1078_RS07770at 100.213 kb on + strand, within HMPREF1078_RS07770at 100.214 kb on - strand, within HMPREF1078_RS07770at 100.214 kb on - strand, within HMPREF1078_RS07770at 100.214 kb on - strand, within HMPREF1078_RS07770at 100.242 kb on + strand, within HMPREF1078_RS07770at 100.242 kb on + strand, within HMPREF1078_RS07770at 100.342 kb on + strand, within HMPREF1078_RS07770at 100.342 kb on + strand, within HMPREF1078_RS07770at 100.504 kb on + strandat 100.504 kb on + strandat 100.504 kb on + strandat 100.505 kb on - strandat 100.505 kb on - strandat 100.505 kb on - strandat 100.505 kb on - strandat 100.505 kb on - strandat 100.507 kb on + strandat 100.513 kb on + strandat 100.542 kb on + strandat 100.543 kb on - strandat 100.543 kb on - strandat 100.549 kb on + strandat 100.550 kb on - strandat 100.551 kb on + strandat 100.551 kb on + strandat 100.617 kb on - strandat 100.622 kb on + strandat 100.624 kb on + strandat 100.624 kb on + strandat 100.624 kb on + strandat 100.625 kb on - strandat 100.625 kb on - strandat 100.625 kb on - strandat 100.625 kb on - strandat 100.625 kb on - strandat 100.643 kb on - strandat 100.678 kb on + strandat 100.678 kb on + strandat 100.678 kb on + strandat 100.679 kb on - strandat 100.684 kb on - strandat 100.692 kb on + strandat 100.703 kb on + strandat 100.704 kb on - strandat 100.704 kb on - strandat 100.706 kb on - strandat 100.709 kb on + strandat 100.714 kb on + strandat 100.753 kb on + strandat 100.753 kb on + strandat 100.753 kb on + strandat 100.753 kb on + strandat 100.753 kb on + strandat 100.754 kb on - strandat 100.754 kb on - strandat 100.754 kb on - strandat 100.841 kb on + strand, within HMPREF1078_RS07775at 100.842 kb on - strand, within HMPREF1078_RS07775at 100.842 kb on - strand, within HMPREF1078_RS07775at 100.867 kb on + strand, within HMPREF1078_RS07775at 100.879 kb on + strand, within HMPREF1078_RS07775at 100.880 kb on - strand, within HMPREF1078_RS07775at 100.880 kb on - strand, within HMPREF1078_RS07775at 100.923 kb on + strand, within HMPREF1078_RS07775at 101.030 kb on - strand, within HMPREF1078_RS07775at 101.036 kb on - strand, within HMPREF1078_RS07775at 101.037 kb on + strand, within HMPREF1078_RS07775at 101.037 kb on + strand, within HMPREF1078_RS07775at 101.038 kb on - strand, within HMPREF1078_RS07775at 101.038 kb on - strand, within HMPREF1078_RS07775at 101.063 kb on + strand, within HMPREF1078_RS07775at 101.065 kb on + strand, within HMPREF1078_RS07775at 101.066 kb on - strand, within HMPREF1078_RS07775at 101.066 kb on - strand, within HMPREF1078_RS07775at 101.082 kb on + strand, within HMPREF1078_RS07775at 101.082 kb on + strand, within HMPREF1078_RS07775at 101.115 kb on - strand, within HMPREF1078_RS07775at 101.115 kb on - strand, within HMPREF1078_RS07775at 101.119 kb on + strand, within HMPREF1078_RS07775at 101.119 kb on + strand, within HMPREF1078_RS07775at 101.120 kb on - strand, within HMPREF1078_RS07775at 101.203 kb on - strand, within HMPREF1078_RS07775at 101.255 kb on - strand, within HMPREF1078_RS07775at 101.422 kb on - strand, within HMPREF1078_RS07775at 101.422 kb on - strand, within HMPREF1078_RS07775at 101.453 kb on + strand, within HMPREF1078_RS07775at 101.454 kb on - strand, within HMPREF1078_RS07775at 101.454 kb on - strand, within HMPREF1078_RS07775at 101.457 kb on - strand, within HMPREF1078_RS07775at 101.457 kb on - strand, within HMPREF1078_RS07775at 101.469 kb on - strand, within HMPREF1078_RS07775at 101.470 kb on + strand, within HMPREF1078_RS07775at 101.470 kb on + strand, within HMPREF1078_RS07775at 101.471 kb on - strand, within HMPREF1078_RS07775at 101.488 kb on + strand, within HMPREF1078_RS07775at 101.488 kb on + strand, within HMPREF1078_RS07775at 101.516 kb on - strand, within HMPREF1078_RS07775at 101.630 kb on + strand, within HMPREF1078_RS07780at 101.635 kb on + strand, within HMPREF1078_RS07780at 101.692 kb on + strand, within HMPREF1078_RS07780at 101.758 kb on + strand, within HMPREF1078_RS07780at 101.758 kb on + strand, within HMPREF1078_RS07780at 101.758 kb on + strand, within HMPREF1078_RS07780at 101.759 kb on - strand, within HMPREF1078_RS07780at 101.806 kb on + strandat 101.806 kb on + strandat 101.811 kb on + strandat 101.811 kb on + strandat 101.813 kb on + strandat 101.826 kb on - strandat 101.854 kb on + strandat 101.863 kb on + strandat 101.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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99,792 + HMPREF1078_RS07770 0.62 +0.4
99,863 - HMPREF1078_RS07770 0.65 -1.7
99,919 + HMPREF1078_RS07770 0.68 +2.0
99,922 - HMPREF1078_RS07770 0.68 -2.6
99,958 + HMPREF1078_RS07770 0.70 -1.0
100,085 + HMPREF1078_RS07770 0.75 -1.0
100,086 - HMPREF1078_RS07770 0.75 +0.4
100,090 - HMPREF1078_RS07770 0.76 -0.2
100,165 + HMPREF1078_RS07770 0.79 -1.9
100,166 - HMPREF1078_RS07770 0.79 -1.4
100,166 - HMPREF1078_RS07770 0.79 -1.5
100,166 - HMPREF1078_RS07770 0.79 -1.7
100,167 + HMPREF1078_RS07770 0.79 +1.0
100,213 + HMPREF1078_RS07770 0.81 +0.5
100,214 - HMPREF1078_RS07770 0.81 +0.4
100,214 - HMPREF1078_RS07770 0.81 -0.5
100,214 - HMPREF1078_RS07770 0.81 -1.8
100,242 + HMPREF1078_RS07770 0.82 -0.6
100,242 + HMPREF1078_RS07770 0.82 -0.6
100,342 + HMPREF1078_RS07770 0.87 -2.9
100,342 + HMPREF1078_RS07770 0.87 -0.6
100,504 + -2.4
100,504 + -1.4
100,504 + +0.1
100,505 - -1.4
100,505 - -0.3
100,505 - -0.9
100,505 - +0.5
100,505 - -2.5
100,507 + -2.4
100,513 + -1.9
100,542 + +0.4
100,543 - -1.4
100,543 - -0.3
100,549 + -0.2
100,550 - +0.2
100,551 + -0.9
100,551 + -0.6
100,617 - +0.6
100,622 + +0.4
100,624 + +2.3
100,624 + -1.0
100,624 + -2.3
100,625 - +1.1
100,625 - -0.6
100,625 - -0.6
100,625 - +0.4
100,625 - +0.8
100,643 - -0.0
100,678 + +1.3
100,678 + +1.0
100,678 + -0.5
100,679 - -2.7
100,684 - -0.4
100,692 + +0.4
100,703 + -2.1
100,704 - -2.9
100,704 - -1.9
100,706 - +0.8
100,709 + -1.4
100,714 + +1.5
100,753 + -0.0
100,753 + -1.0
100,753 + -1.0
100,753 + -1.6
100,753 + -1.9
100,754 - -0.6
100,754 - -2.0
100,754 - -1.4
100,841 + HMPREF1078_RS07775 0.13 -2.9
100,842 - HMPREF1078_RS07775 0.13 -2.5
100,842 - HMPREF1078_RS07775 0.13 -0.0
100,867 + HMPREF1078_RS07775 0.16 -1.4
100,879 + HMPREF1078_RS07775 0.17 -1.9
100,880 - HMPREF1078_RS07775 0.17 -2.1
100,880 - HMPREF1078_RS07775 0.17 -1.4
100,923 + HMPREF1078_RS07775 0.22 -4.6
101,030 - HMPREF1078_RS07775 0.34 -1.0
101,036 - HMPREF1078_RS07775 0.35 -2.0
101,037 + HMPREF1078_RS07775 0.35 -1.0
101,037 + HMPREF1078_RS07775 0.35 -0.0
101,038 - HMPREF1078_RS07775 0.35 -2.7
101,038 - HMPREF1078_RS07775 0.35 -1.9
101,063 + HMPREF1078_RS07775 0.38 -1.9
101,065 + HMPREF1078_RS07775 0.38 -2.9
101,066 - HMPREF1078_RS07775 0.38 -0.6
101,066 - HMPREF1078_RS07775 0.38 +1.0
101,082 + HMPREF1078_RS07775 0.40 -0.6
101,082 + HMPREF1078_RS07775 0.40 -0.0
101,115 - HMPREF1078_RS07775 0.44 +1.0
101,115 - HMPREF1078_RS07775 0.44 -1.7
101,119 + HMPREF1078_RS07775 0.44 -2.2
101,119 + HMPREF1078_RS07775 0.44 -1.0
101,120 - HMPREF1078_RS07775 0.45 -1.4
101,203 - HMPREF1078_RS07775 0.54 -2.7
101,255 - HMPREF1078_RS07775 0.60 -0.6
101,422 - HMPREF1078_RS07775 0.79 -1.9
101,422 - HMPREF1078_RS07775 0.79 -0.6
101,453 + HMPREF1078_RS07775 0.83 -0.6
101,454 - HMPREF1078_RS07775 0.83 -1.0
101,454 - HMPREF1078_RS07775 0.83 -2.0
101,457 - HMPREF1078_RS07775 0.83 -2.6
101,457 - HMPREF1078_RS07775 0.83 -1.9
101,469 - HMPREF1078_RS07775 0.84 -2.5
101,470 + HMPREF1078_RS07775 0.84 -0.0
101,470 + HMPREF1078_RS07775 0.84 +1.0
101,471 - HMPREF1078_RS07775 0.85 -2.7
101,488 + HMPREF1078_RS07775 0.87 -2.9
101,488 + HMPREF1078_RS07775 0.87 -0.0
101,516 - HMPREF1078_RS07775 0.90 -2.0
101,630 + HMPREF1078_RS07780 0.11 -1.6
101,635 + HMPREF1078_RS07780 0.13 -2.2
101,692 + HMPREF1078_RS07780 0.43 -2.4
101,758 + HMPREF1078_RS07780 0.76 -2.5
101,758 + HMPREF1078_RS07780 0.76 -2.4
101,758 + HMPREF1078_RS07780 0.76 -2.4
101,759 - HMPREF1078_RS07780 0.77 -1.4
101,806 + -1.0
101,806 + -2.5
101,811 + -2.4
101,811 + -0.0
101,813 + -0.0
101,826 - -0.6
101,854 + -1.6
101,863 + -1.0
101,870 + -0.6

Or see this region's nucleotide sequence