Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07725

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
87,011	-		HMPREF1078_RS07720	0.48	-0.0
87,030	+		HMPREF1078_RS07720	0.49	+1.0
87,031	-		HMPREF1078_RS07720	0.49	-2.5
87,100	+		HMPREF1078_RS07720	0.55	-1.9
87,100	+		HMPREF1078_RS07720	0.55	-1.0
87,100	+		HMPREF1078_RS07720	0.55	+1.0
87,101	-		HMPREF1078_RS07720	0.56	-2.0
87,101	-		HMPREF1078_RS07720	0.56	-0.0
87,101	-		HMPREF1078_RS07720	0.56	+1.7
87,101	-		HMPREF1078_RS07720	0.56	-1.0
87,101	-		HMPREF1078_RS07720	0.56	-0.0
87,101	-		HMPREF1078_RS07720	0.56	+2.5
87,101	-		HMPREF1078_RS07720	0.56	-0.2
87,123	+		HMPREF1078_RS07720	0.58	+0.5
87,124	-		HMPREF1078_RS07720	0.58	-0.5
87,129	+		HMPREF1078_RS07720	0.58	+1.3
87,129	+		HMPREF1078_RS07720	0.58	+0.1
87,129	+		HMPREF1078_RS07720	0.58	-0.8
87,129	+		HMPREF1078_RS07720	0.58	+1.5
87,130	-		HMPREF1078_RS07720	0.58	-0.5
87,131	+		HMPREF1078_RS07720	0.58	+2.0
87,132	-		HMPREF1078_RS07720	0.58	+0.1
87,164	+		HMPREF1078_RS07720	0.61	-1.6
87,164	+		HMPREF1078_RS07720	0.61	+1.2
87,164	+		HMPREF1078_RS07720	0.61	+0.6
87,164	+		HMPREF1078_RS07720	0.61	+2.0
87,165	-		HMPREF1078_RS07720	0.61	-1.0
87,181	+		HMPREF1078_RS07720	0.63	+0.6
87,187	+		HMPREF1078_RS07720	0.63	+2.1
87,197	+		HMPREF1078_RS07720	0.64	+0.6
87,205	+		HMPREF1078_RS07720	0.65	-0.9
87,213	-		HMPREF1078_RS07720	0.65	-0.6
87,220	+		HMPREF1078_RS07720	0.66	+2.0
87,221	-		HMPREF1078_RS07720	0.66	-1.9
87,234	+		HMPREF1078_RS07720	0.67	+0.5
87,235	-		HMPREF1078_RS07720	0.67	+0.6
87,237	-		HMPREF1078_RS07720	0.67	-2.3
87,270	-		HMPREF1078_RS07720	0.70	-0.6
87,288	+		HMPREF1078_RS07720	0.72	-0.6
87,312	+		HMPREF1078_RS07720	0.74	-0.2
87,312	+		HMPREF1078_RS07720	0.74	+1.0
87,332	+		HMPREF1078_RS07720	0.76	+0.7
87,388	+		HMPREF1078_RS07720	0.81	+1.0
87,398	-		HMPREF1078_RS07720	0.82	+0.2
87,426	+		HMPREF1078_RS07720	0.84	-0.2
87,471	+		HMPREF1078_RS07720	0.88	-0.0
87,472	-		HMPREF1078_RS07720	0.88	-0.4
87,474	+		HMPREF1078_RS07720	0.88	-0.0
87,484	-		HMPREF1078_RS07720	0.89	+0.8
87,505	+				-0.2
87,506	-				-0.0
87,518	-				-0.0
87,519	+				+0.5
87,578	-				-1.6
87,609	+				-0.6
87,612	+				+1.0
87,615	+				+0.2
87,619	-				-3.6
87,619	-				+1.0
87,620	+				-1.4
87,620	+				+1.0
87,620	+				+1.7
87,621	-				-0.6
87,621	-				+1.0
87,635	+				-0.3
87,650	+				+1.2
87,668	+				-1.0
87,668	+				+1.0
87,668	+				-0.0
87,669	-				-0.3
87,669	-				-3.2
87,669	-				-1.4
87,672	+				-0.3
87,673	-				+0.1
87,673	-				+0.6
87,676	-				-0.0
87,685	-				+2.1
87,688	+				+1.4
87,689	-				+1.0
87,689	-				+0.8
87,689	-				-2.7
87,697	+				+2.0
87,698	-				-0.9
87,709	-				-1.4
87,710	+				-0.4
87,710	+				+3.3
87,711	-				-0.0
87,737	-				-1.0
87,763	-				-0.8
87,765	-				-1.9
87,765	-				+0.4
87,792	-				+1.4
87,792	-				+0.8
87,866	-				+1.0
87,869	+				-1.4
87,898	+				-0.2
87,906	+				-2.2
87,907	-				-0.0
87,907	-				-2.6
87,921	+				+2.0
87,922	-				-0.0
87,933	+				+1.2
87,935	+				-1.0
87,955	+				-1.9
87,955	+				+1.5
87,965	+				+0.1
87,972	+				-1.3
87,973	-				-1.9
87,974	+				-2.0
88,006	+				-2.2
88,006	+				-0.6
88,007	-				-2.4
88,007	-				-2.9
88,008	+				-2.3
88,009	-				-1.6
88,053	+				-2.2
88,053	+				-2.7
88,057	+				-1.9
88,057	+				-1.6
88,057	+				-1.4
88,101	+				-1.0
88,101	+				-2.9
88,102	-				-3.4
88,231	+		HMPREF1078_RS07725	0.13	-3.7
88,274	+		HMPREF1078_RS07725	0.15	-1.4
88,274	+		HMPREF1078_RS07725	0.15	-2.4
88,275	-		HMPREF1078_RS07725	0.15	-1.9
88,275	-		HMPREF1078_RS07725	0.15	-1.0
88,310	+		HMPREF1078_RS07725	0.17	-3.2
88,310	+		HMPREF1078_RS07725	0.17	-0.9
88,311	-		HMPREF1078_RS07725	0.17	-1.6
88,311	-		HMPREF1078_RS07725	0.17	-3.4
88,349	+		HMPREF1078_RS07725	0.20	-0.0
88,349	+		HMPREF1078_RS07725	0.20	-3.9
88,350	-		HMPREF1078_RS07725	0.20	+1.0
88,352	-		HMPREF1078_RS07725	0.20	-2.0
88,376	+		HMPREF1078_RS07725	0.21	-2.9
88,388	+		HMPREF1078_RS07725	0.22	-2.6
88,388	+		HMPREF1078_RS07725	0.22	-0.0
88,403	+		HMPREF1078_RS07725	0.23	-0.8
88,475	+		HMPREF1078_RS07725	0.27	-1.6
88,502	-		HMPREF1078_RS07725	0.29	-3.6
88,752	-		HMPREF1078_RS07725	0.43	-0.4
88,891	+		HMPREF1078_RS07725	0.51	-1.6
88,976	+		HMPREF1078_RS07725	0.56	-4.0
88,977	-		HMPREF1078_RS07725	0.56	-0.0
88,977	-		HMPREF1078_RS07725	0.56	-0.6
88,977	-		HMPREF1078_RS07725	0.56	-3.9
89,011	+		HMPREF1078_RS07725	0.58	-2.6
89,062	+		HMPREF1078_RS07725	0.61	+0.1
89,217	+		HMPREF1078_RS07725	0.70	-3.4
89,220	-		HMPREF1078_RS07725	0.70	-1.9
89,273	+		HMPREF1078_RS07725	0.73	-1.9
89,273	+		HMPREF1078_RS07725	0.73	-3.1
89,274	-		HMPREF1078_RS07725	0.73	-1.4
89,385	+		HMPREF1078_RS07725	0.80	-3.0
89,385	+		HMPREF1078_RS07725	0.80	-1.6
89,385	+		HMPREF1078_RS07725	0.80	-2.5
89,386	-		HMPREF1078_RS07725	0.80	-1.6
89,410	+		HMPREF1078_RS07725	0.81	-1.0
89,411	-		HMPREF1078_RS07725	0.81	-1.0
89,524	-		HMPREF1078_RS07725	0.88	-1.3
89,542	+		HMPREF1078_RS07725	0.89	+0.0
89,543	-		HMPREF1078_RS07725	0.89	-1.6
89,583	+				-2.9
89,617	+				-2.2
89,617	+				-2.4
89,618	-				-1.4
89,675	+				-2.1
89,728	+				+2.0
89,729	-				+1.0
89,729	-				+1.0
89,729	-				-0.0
89,730	+				-0.4
89,730	+				+0.6
89,730	+				+1.0
89,731	-				-2.0
89,758	+				+1.5
89,758	+				-1.5
89,759	-				-2.0
89,767	-				-0.2
89,774	+				-1.4
89,783	+				+0.3
89,812	+				-0.4
89,813	-				-1.0
89,813	-				+1.0
89,816	-				-0.2
89,992	+		HMPREF1078_RS07730	0.15	+0.1
89,993	-		HMPREF1078_RS07730	0.15	-1.6
90,000	+		HMPREF1078_RS07730	0.15	+0.2
90,000	+		HMPREF1078_RS07730	0.15	+2.0
90,001	-		HMPREF1078_RS07730	0.15	-0.6
90,002	+		HMPREF1078_RS07730	0.15	+0.2
90,062	+		HMPREF1078_RS07730	0.19	-0.7
90,063	-		HMPREF1078_RS07730	0.19	-0.2
90,063	-		HMPREF1078_RS07730	0.19	-0.4
90,063	-		HMPREF1078_RS07730	0.19	-0.4
90,063	-		HMPREF1078_RS07730	0.19	-1.0
90,074	+		HMPREF1078_RS07730	0.19	-1.7
90,075	-		HMPREF1078_RS07730	0.19	-0.6
90,120	+		HMPREF1078_RS07730	0.22	-1.0
90,121	-		HMPREF1078_RS07730	0.22	-2.7
90,121	-		HMPREF1078_RS07730	0.22	-0.6
90,182	+		HMPREF1078_RS07730	0.26	+2.8
90,200	+		HMPREF1078_RS07730	0.27	+2.5
90,201	-		HMPREF1078_RS07730	0.27	+0.1
90,291	+		HMPREF1078_RS07730	0.32	+1.1
90,359	+		HMPREF1078_RS07730	0.36	-0.2
90,360	-		HMPREF1078_RS07730	0.36	-1.6
90,401	+		HMPREF1078_RS07730	0.39	-1.6
90,402	-		HMPREF1078_RS07730	0.39	+2.0
90,402	-		HMPREF1078_RS07730	0.39	+1.4
90,405	+		HMPREF1078_RS07730	0.39	+3.5
90,406	-		HMPREF1078_RS07730	0.39	-0.0
90,437	+		HMPREF1078_RS07730	0.41	+0.3
90,438	-		HMPREF1078_RS07730	0.41	-2.3
90,495	+		HMPREF1078_RS07730	0.44	+0.6
90,495	+		HMPREF1078_RS07730	0.44	+0.0
90,495	+		HMPREF1078_RS07730	0.44	+0.2
90,671	+		HMPREF1078_RS07730	0.54	+1.5
90,672	-		HMPREF1078_RS07730	0.55	-0.0
90,733	+		HMPREF1078_RS07730	0.58	-0.5