Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07600 and HMPREF1078_RS07605 are separated by 36 nucleotides HMPREF1078_RS07605 and HMPREF1078_RS07610 are separated by 57 nucleotides HMPREF1078_RS07610 and HMPREF1078_RS07615 are separated by 49 nucleotides HMPREF1078_RS07615 and HMPREF1078_RS07620 are separated by 259 nucleotides
HMPREF1078_RS07600: HMPREF1078_RS07600 - YqgE/AlgH family protein, at 56,161 to 56,757
_RS07600
HMPREF1078_RS07605: HMPREF1078_RS07605 - GNAT family N-acetyltransferase, at 56,794 to 57,327
_RS07605
HMPREF1078_RS07610: HMPREF1078_RS07610 - glycosyltransferase family 2 protein, at 57,385 to 58,542
_RS07610
HMPREF1078_RS07615: HMPREF1078_RS07615 - recombination mediator RecR, at 58,592 to 59,215
_RS07615
HMPREF1078_RS07620: HMPREF1078_RS07620 - oligopeptide transporter, OPT family, at 59,475 to 61,475
_RS07620
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 56.450 kb on + strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.460 kb on + strand, within HMPREF1078_RS07600 at 56.461 kb on - strand, within HMPREF1078_RS07600 at 56.475 kb on - strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.522 kb on - strand, within HMPREF1078_RS07600 at 56.524 kb on - strand, within HMPREF1078_RS07600 at 56.568 kb on - strand, within HMPREF1078_RS07600 at 56.609 kb on + strand, within HMPREF1078_RS07600 at 56.629 kb on + strand, within HMPREF1078_RS07600 at 56.630 kb on + strand, within HMPREF1078_RS07600 at 56.658 kb on - strand, within HMPREF1078_RS07600 at 56.713 kb on + strand at 56.714 kb on - strand at 56.755 kb on + strand at 56.770 kb on + strand at 56.781 kb on - strand at 56.850 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.874 kb on + strand, within HMPREF1078_RS07605 at 56.875 kb on - strand, within HMPREF1078_RS07605 at 56.926 kb on - strand, within HMPREF1078_RS07605 at 57.081 kb on - strand, within HMPREF1078_RS07605 at 57.096 kb on + strand, within HMPREF1078_RS07605 at 57.158 kb on - strand, within HMPREF1078_RS07605 at 57.178 kb on + strand, within HMPREF1078_RS07605 at 57.179 kb on - strand, within HMPREF1078_RS07605 at 57.180 kb on + strand, within HMPREF1078_RS07605 at 57.180 kb on + strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.207 kb on - strand, within HMPREF1078_RS07605 at 57.260 kb on + strand, within HMPREF1078_RS07605 at 57.356 kb on + strand at 57.397 kb on + strand at 57.398 kb on - strand at 57.414 kb on + strand at 57.414 kb on + strand at 57.414 kb on + strand at 57.415 kb on - strand at 57.415 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.420 kb on + strand at 57.425 kb on + strand at 57.425 kb on + strand at 57.425 kb on + strand at 57.426 kb on - strand at 57.460 kb on + strand at 57.510 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.584 kb on + strand, within HMPREF1078_RS07610 at 57.584 kb on + strand, within HMPREF1078_RS07610 at 57.585 kb on - strand, within HMPREF1078_RS07610 at 57.785 kb on + strand, within HMPREF1078_RS07610 at 57.796 kb on + strand, within HMPREF1078_RS07610 at 57.815 kb on + strand, within HMPREF1078_RS07610 at 57.830 kb on + strand, within HMPREF1078_RS07610 at 57.831 kb on - strand, within HMPREF1078_RS07610 at 57.831 kb on - strand, within HMPREF1078_RS07610 at 57.865 kb on - strand, within HMPREF1078_RS07610 at 57.891 kb on - strand, within HMPREF1078_RS07610 at 57.893 kb on + strand, within HMPREF1078_RS07610 at 57.948 kb on - strand, within HMPREF1078_RS07610 at 57.948 kb on - strand, within HMPREF1078_RS07610 at 57.952 kb on - strand, within HMPREF1078_RS07610 at 57.981 kb on + strand, within HMPREF1078_RS07610 at 58.035 kb on + strand, within HMPREF1078_RS07610 at 58.036 kb on - strand, within HMPREF1078_RS07610 at 58.058 kb on + strand, within HMPREF1078_RS07610 at 58.299 kb on - strand, within HMPREF1078_RS07610 at 58.401 kb on - strand, within HMPREF1078_RS07610 at 58.442 kb on - strand at 58.442 kb on - strand at 58.442 kb on - strand at 58.442 kb on - strand at 58.462 kb on + strand at 58.514 kb on + strand at 58.525 kb on + strand at 58.526 kb on - strand at 58.528 kb on - strand at 58.528 kb on - strand at 58.570 kb on + strand at 58.578 kb on - strand at 58.582 kb on + strand at 58.585 kb on - strand at 58.585 kb on - strand at 58.662 kb on + strand, within HMPREF1078_RS07615 at 58.719 kb on + strand, within HMPREF1078_RS07615 at 58.719 kb on + strand, within HMPREF1078_RS07615 at 58.720 kb on - strand, within HMPREF1078_RS07615 at 58.738 kb on - strand, within HMPREF1078_RS07615 at 58.824 kb on - strand, within HMPREF1078_RS07615 at 58.856 kb on + strand, within HMPREF1078_RS07615 at 58.857 kb on - strand, within HMPREF1078_RS07615 at 58.876 kb on + strand, within HMPREF1078_RS07615 at 58.897 kb on - strand, within HMPREF1078_RS07615 at 58.996 kb on + strand, within HMPREF1078_RS07615 at 58.997 kb on - strand, within HMPREF1078_RS07615 at 59.018 kb on + strand, within HMPREF1078_RS07615 at 59.018 kb on + strand, within HMPREF1078_RS07615 at 59.019 kb on - strand, within HMPREF1078_RS07615 at 59.019 kb on - strand, within HMPREF1078_RS07615 at 59.019 kb on - strand, within HMPREF1078_RS07615 at 59.020 kb on + strand, within HMPREF1078_RS07615 at 59.021 kb on - strand, within HMPREF1078_RS07615 at 59.035 kb on + strand, within HMPREF1078_RS07615 at 59.263 kb on - strand at 59.265 kb on - strand at 59.284 kb on - strand at 59.340 kb on + strand at 59.341 kb on - strand at 59.342 kb on + strand at 59.342 kb on + strand at 59.371 kb on + strand at 59.423 kb on + strand at 59.429 kb on - strand at 59.442 kb on + strand at 59.445 kb on - strand at 59.445 kb on - strand at 59.461 kb on + strand at 59.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 56,450 + HMPREF1078_RS07600 0.48 -1.9 56,451 - HMPREF1078_RS07600 0.49 +0.2 56,451 - HMPREF1078_RS07600 0.49 +1.5 56,451 - HMPREF1078_RS07600 0.49 +1.3 56,460 + HMPREF1078_RS07600 0.50 +1.4 56,461 - HMPREF1078_RS07600 0.50 -1.9 56,475 - HMPREF1078_RS07600 0.53 +3.1 56,516 + HMPREF1078_RS07600 0.59 +1.0 56,516 + HMPREF1078_RS07600 0.59 +1.1 56,516 + HMPREF1078_RS07600 0.59 +0.4 56,516 + HMPREF1078_RS07600 0.59 -0.7 56,517 - HMPREF1078_RS07600 0.60 -0.9 56,517 - HMPREF1078_RS07600 0.60 -0.0 56,517 - HMPREF1078_RS07600 0.60 -0.5 56,517 - HMPREF1078_RS07600 0.60 +2.4 56,517 - HMPREF1078_RS07600 0.60 -0.3 56,517 - HMPREF1078_RS07600 0.60 -0.3 56,521 + HMPREF1078_RS07600 0.60 +1.4 56,521 + HMPREF1078_RS07600 0.60 +1.0 56,521 + HMPREF1078_RS07600 0.60 -3.0 56,521 + HMPREF1078_RS07600 0.60 +2.4 56,522 - HMPREF1078_RS07600 0.60 +1.0 56,524 - HMPREF1078_RS07600 0.61 +1.6 56,568 - HMPREF1078_RS07600 0.68 -1.4 56,609 + HMPREF1078_RS07600 0.75 -0.6 56,629 + HMPREF1078_RS07600 0.78 +1.4 56,630 + HMPREF1078_RS07600 0.79 +0.3 56,658 - HMPREF1078_RS07600 0.83 -0.4 56,713 + -2.2 56,714 - -0.6 56,755 + -0.9 56,770 + -0.6 56,781 - +0.7 56,850 + HMPREF1078_RS07605 0.10 -0.1 56,872 + HMPREF1078_RS07605 0.15 -1.3 56,872 + HMPREF1078_RS07605 0.15 -3.9 56,872 + HMPREF1078_RS07605 0.15 +1.0 56,873 - HMPREF1078_RS07605 0.15 -0.0 56,873 - HMPREF1078_RS07605 0.15 -0.7 56,873 - HMPREF1078_RS07605 0.15 -0.5 56,874 + HMPREF1078_RS07605 0.15 +2.5 56,875 - HMPREF1078_RS07605 0.15 -1.0 56,926 - HMPREF1078_RS07605 0.25 -1.5 57,081 - HMPREF1078_RS07605 0.54 -0.2 57,096 + HMPREF1078_RS07605 0.57 -3.4 57,158 - HMPREF1078_RS07605 0.68 -0.8 57,178 + HMPREF1078_RS07605 0.72 -2.0 57,179 - HMPREF1078_RS07605 0.72 -1.0 57,180 + HMPREF1078_RS07605 0.72 -1.9 57,180 + HMPREF1078_RS07605 0.72 -0.0 57,181 - HMPREF1078_RS07605 0.72 +1.0 57,181 - HMPREF1078_RS07605 0.72 +0.1 57,181 - HMPREF1078_RS07605 0.72 -2.2 57,207 - HMPREF1078_RS07605 0.77 -0.9 57,260 + HMPREF1078_RS07605 0.87 -1.9 57,356 + -2.4 57,397 + -0.0 57,398 - -0.0 57,414 + -1.6 57,414 + -1.9 57,414 + -0.0 57,415 - +1.0 57,415 - +1.4 57,419 - -0.6 57,419 - +1.2 57,419 - -2.4 57,419 - -0.5 57,419 - -1.4 57,419 - -1.0 57,420 + -0.2 57,425 + -1.7 57,425 + -2.2 57,425 + -1.6 57,426 - -0.9 57,460 + -1.0 57,510 + HMPREF1078_RS07610 0.11 -1.2 57,540 + HMPREF1078_RS07610 0.13 -1.9 57,540 + HMPREF1078_RS07610 0.13 -1.4 57,540 + HMPREF1078_RS07610 0.13 -1.4 57,541 - HMPREF1078_RS07610 0.13 -0.6 57,541 - HMPREF1078_RS07610 0.13 -1.9 57,541 - HMPREF1078_RS07610 0.13 -2.0 57,584 + HMPREF1078_RS07610 0.17 -2.0 57,584 + HMPREF1078_RS07610 0.17 -1.8 57,585 - HMPREF1078_RS07610 0.17 -1.0 57,785 + HMPREF1078_RS07610 0.35 +2.0 57,796 + HMPREF1078_RS07610 0.35 -2.4 57,815 + HMPREF1078_RS07610 0.37 -2.7 57,830 + HMPREF1078_RS07610 0.38 -2.2 57,831 - HMPREF1078_RS07610 0.39 -0.0 57,831 - HMPREF1078_RS07610 0.39 -2.9 57,865 - HMPREF1078_RS07610 0.41 +0.5 57,891 - HMPREF1078_RS07610 0.44 -0.0 57,893 + HMPREF1078_RS07610 0.44 -1.0 57,948 - HMPREF1078_RS07610 0.49 -2.2 57,948 - HMPREF1078_RS07610 0.49 -2.9 57,952 - HMPREF1078_RS07610 0.49 -2.7 57,981 + HMPREF1078_RS07610 0.51 -1.0 58,035 + HMPREF1078_RS07610 0.56 -0.6 58,036 - HMPREF1078_RS07610 0.56 -0.3 58,058 + HMPREF1078_RS07610 0.58 -3.7 58,299 - HMPREF1078_RS07610 0.79 -1.9 58,401 - HMPREF1078_RS07610 0.88 -1.4 58,442 - -0.4 58,442 - -2.4 58,442 - +0.1 58,442 - +1.4 58,462 + -0.0 58,514 + -3.1 58,525 + -0.9 58,526 - +0.2 58,528 - -1.6 58,528 - -1.2 58,570 + -4.0 58,578 - -1.0 58,582 + -3.1 58,585 - -1.0 58,585 - -0.6 58,662 + HMPREF1078_RS07615 0.11 -4.4 58,719 + HMPREF1078_RS07615 0.20 -0.6 58,719 + HMPREF1078_RS07615 0.20 -2.4 58,720 - HMPREF1078_RS07615 0.21 +0.8 58,738 - HMPREF1078_RS07615 0.23 +0.8 58,824 - HMPREF1078_RS07615 0.37 -1.9 58,856 + HMPREF1078_RS07615 0.42 -1.6 58,857 - HMPREF1078_RS07615 0.42 -2.2 58,876 + HMPREF1078_RS07615 0.46 -2.0 58,897 - HMPREF1078_RS07615 0.49 +1.0 58,996 + HMPREF1078_RS07615 0.65 -0.4 58,997 - HMPREF1078_RS07615 0.65 +0.3 59,018 + HMPREF1078_RS07615 0.68 -0.0 59,018 + HMPREF1078_RS07615 0.68 -0.6 59,019 - HMPREF1078_RS07615 0.68 -0.6 59,019 - HMPREF1078_RS07615 0.68 +1.0 59,019 - HMPREF1078_RS07615 0.68 -0.2 59,020 + HMPREF1078_RS07615 0.69 -3.2 59,021 - HMPREF1078_RS07615 0.69 -2.6 59,035 + HMPREF1078_RS07615 0.71 -3.1 59,263 - -0.6 59,265 - +0.2 59,284 - -0.6 59,340 + -0.6 59,341 - +2.3 59,342 + +0.4 59,342 + -1.9 59,371 + -0.0 59,423 + -1.5 59,429 - -2.2 59,442 + -1.6 59,445 - -0.0 59,445 - +0.5 59,461 + -0.3 59,467 + -0.6
Or see this region's nucleotide sequence