Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07315 and HMPREF1078_RS07320 are separated by 106 nucleotides HMPREF1078_RS07320 and HMPREF1078_RS07325 are separated by 28 nucleotides HMPREF1078_RS07325 and HMPREF1078_RS07330 are separated by 175 nucleotides
HMPREF1078_RS07315: HMPREF1078_RS07315 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 892,636 to 893,802
_RS07315
HMPREF1078_RS07320: HMPREF1078_RS07320 - Gfo/Idh/MocA family oxidoreductase, at 893,909 to 894,925
_RS07320
HMPREF1078_RS07325: HMPREF1078_RS07325 - Lrp/AsnC family transcriptional regulator, at 894,954 to 895,424
_RS07325
HMPREF1078_RS07330: HMPREF1078_RS07330 - O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase, at 895,600 to 896,889
_RS07330
Position (kb) 893
894
895 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.977 kb on + strand, within HMPREF1078_RS07315 at 892.978 kb on - strand, within HMPREF1078_RS07315 at 893.074 kb on - strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.105 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.317 kb on + strand, within HMPREF1078_RS07315 at 893.318 kb on - strand, within HMPREF1078_RS07315 at 893.507 kb on - strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.528 kb on + strand, within HMPREF1078_RS07315 at 893.593 kb on + strand, within HMPREF1078_RS07315 at 893.635 kb on - strand, within HMPREF1078_RS07315 at 893.635 kb on - strand, within HMPREF1078_RS07315 at 893.646 kb on - strand, within HMPREF1078_RS07315 at 893.700 kb on + strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.736 kb on + strand at 893.821 kb on - strand at 893.835 kb on + strand at 894.050 kb on + strand, within HMPREF1078_RS07320 at 894.084 kb on + strand, within HMPREF1078_RS07320 at 894.085 kb on - strand, within HMPREF1078_RS07320 at 894.114 kb on + strand, within HMPREF1078_RS07320 at 894.114 kb on + strand, within HMPREF1078_RS07320 at 894.125 kb on - strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.237 kb on - strand, within HMPREF1078_RS07320 at 894.331 kb on + strand, within HMPREF1078_RS07320 at 894.337 kb on - strand, within HMPREF1078_RS07320 at 894.347 kb on + strand, within HMPREF1078_RS07320 at 894.348 kb on - strand, within HMPREF1078_RS07320 at 894.349 kb on + strand, within HMPREF1078_RS07320 at 894.350 kb on - strand, within HMPREF1078_RS07320 at 894.390 kb on - strand, within HMPREF1078_RS07320 at 894.394 kb on + strand, within HMPREF1078_RS07320 at 894.472 kb on + strand, within HMPREF1078_RS07320 at 894.472 kb on + strand, within HMPREF1078_RS07320 at 894.473 kb on - strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.477 kb on - strand, within HMPREF1078_RS07320 at 894.492 kb on + strand, within HMPREF1078_RS07320 at 894.609 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.692 kb on + strand, within HMPREF1078_RS07320 at 894.693 kb on - strand, within HMPREF1078_RS07320 at 894.694 kb on + strand, within HMPREF1078_RS07320 at 894.695 kb on - strand, within HMPREF1078_RS07320 at 894.695 kb on - strand, within HMPREF1078_RS07320 at 894.780 kb on - strand, within HMPREF1078_RS07320 at 894.781 kb on - strand, within HMPREF1078_RS07320 at 894.782 kb on - strand, within HMPREF1078_RS07320 at 894.856 kb on + strand at 894.857 kb on - strand at 894.859 kb on + strand at 894.870 kb on + strand at 894.871 kb on - strand at 894.912 kb on - strand at 894.912 kb on - strand at 894.923 kb on + strand at 894.924 kb on - strand at 894.924 kb on - strand at 894.926 kb on + strand at 894.927 kb on - strand at 894.937 kb on + strand at 894.960 kb on - strand at 895.036 kb on - strand, within HMPREF1078_RS07325 at 895.049 kb on + strand, within HMPREF1078_RS07325 at 895.061 kb on - strand, within HMPREF1078_RS07325 at 895.063 kb on + strand, within HMPREF1078_RS07325 at 895.072 kb on + strand, within HMPREF1078_RS07325 at 895.102 kb on + strand, within HMPREF1078_RS07325 at 895.103 kb on - strand, within HMPREF1078_RS07325 at 895.113 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.115 kb on + strand, within HMPREF1078_RS07325 at 895.116 kb on - strand, within HMPREF1078_RS07325 at 895.116 kb on - strand, within HMPREF1078_RS07325 at 895.116 kb on - strand, within HMPREF1078_RS07325 at 895.120 kb on + strand, within HMPREF1078_RS07325 at 895.120 kb on + strand, within HMPREF1078_RS07325 at 895.121 kb on - strand, within HMPREF1078_RS07325 at 895.258 kb on + strand, within HMPREF1078_RS07325 at 895.267 kb on - strand, within HMPREF1078_RS07325 at 895.267 kb on - strand, within HMPREF1078_RS07325 at 895.267 kb on - strand, within HMPREF1078_RS07325 at 895.267 kb on - strand, within HMPREF1078_RS07325 at 895.268 kb on + strand, within HMPREF1078_RS07325 at 895.269 kb on - strand, within HMPREF1078_RS07325 at 895.269 kb on - strand, within HMPREF1078_RS07325 at 895.270 kb on + strand, within HMPREF1078_RS07325 at 895.270 kb on + strand, within HMPREF1078_RS07325 at 895.271 kb on - strand, within HMPREF1078_RS07325 at 895.377 kb on - strand, within HMPREF1078_RS07325 at 895.395 kb on + strand at 895.424 kb on + strand at 895.464 kb on + strand at 895.522 kb on + strand at 895.524 kb on + strand at 895.552 kb on - strand at 895.552 kb on - strand at 895.586 kb on - strand at 895.593 kb on + strand at 895.631 kb on + strand at 895.632 kb on - strand at 895.643 kb on + strand at 895.643 kb on + strand at 895.689 kb on + strand at 895.690 kb on - strand at 895.709 kb on - strand at 895.712 kb on + strand at 895.712 kb on + strand at 895.713 kb on - strand at 895.713 kb on - strand at 895.772 kb on - strand, within HMPREF1078_RS07330 at 895.879 kb on + strand, within HMPREF1078_RS07330 at 895.880 kb on - strand, within HMPREF1078_RS07330 at 895.880 kb on - strand, within HMPREF1078_RS07330 at 895.880 kb on - strand, within HMPREF1078_RS07330 at 895.893 kb on + strand, within HMPREF1078_RS07330 at 895.894 kb on - strand, within HMPREF1078_RS07330
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 892,969 - HMPREF1078_RS07315 0.29 -2.9 892,969 - HMPREF1078_RS07315 0.29 -3.0 892,977 + HMPREF1078_RS07315 0.29 -1.8 892,978 - HMPREF1078_RS07315 0.29 -2.2 893,074 - HMPREF1078_RS07315 0.38 -1.4 893,101 + HMPREF1078_RS07315 0.40 -0.4 893,101 + HMPREF1078_RS07315 0.40 -1.2 893,101 + HMPREF1078_RS07315 0.40 -1.4 893,101 + HMPREF1078_RS07315 0.40 -2.0 893,101 + HMPREF1078_RS07315 0.40 -0.6 893,101 + HMPREF1078_RS07315 0.40 -2.6 893,101 - HMPREF1078_RS07315 0.40 -1.6 893,102 - HMPREF1078_RS07315 0.40 -1.5 893,102 - HMPREF1078_RS07315 0.40 +0.0 893,102 - HMPREF1078_RS07315 0.40 -4.6 893,105 + HMPREF1078_RS07315 0.40 -0.3 893,187 + HMPREF1078_RS07315 0.47 -0.7 893,187 + HMPREF1078_RS07315 0.47 -2.8 893,317 + HMPREF1078_RS07315 0.58 -1.1 893,318 - HMPREF1078_RS07315 0.58 -1.0 893,507 - HMPREF1078_RS07315 0.75 -1.8 893,517 + HMPREF1078_RS07315 0.75 -4.2 893,517 + HMPREF1078_RS07315 0.75 -2.3 893,528 + HMPREF1078_RS07315 0.76 -1.5 893,593 + HMPREF1078_RS07315 0.82 -3.0 893,635 - HMPREF1078_RS07315 0.86 -1.9 893,635 - HMPREF1078_RS07315 0.86 -1.9 893,646 - HMPREF1078_RS07315 0.87 -1.1 893,700 + -1.4 893,735 - -2.2 893,735 - -0.8 893,735 - -1.1 893,735 - -1.6 893,736 + -0.9 893,821 - -2.9 893,835 + +0.7 894,050 + HMPREF1078_RS07320 0.14 -2.6 894,084 + HMPREF1078_RS07320 0.17 -1.5 894,085 - HMPREF1078_RS07320 0.17 -3.8 894,114 + HMPREF1078_RS07320 0.20 -1.2 894,114 + HMPREF1078_RS07320 0.20 -1.4 894,125 - HMPREF1078_RS07320 0.21 -3.2 894,236 + HMPREF1078_RS07320 0.32 -3.9 894,236 + HMPREF1078_RS07320 0.32 -3.4 894,236 + HMPREF1078_RS07320 0.32 -0.2 894,236 + HMPREF1078_RS07320 0.32 -1.8 894,237 - HMPREF1078_RS07320 0.32 -1.2 894,331 + HMPREF1078_RS07320 0.41 -2.7 894,337 - HMPREF1078_RS07320 0.42 -0.6 894,347 + HMPREF1078_RS07320 0.43 -2.6 894,348 - HMPREF1078_RS07320 0.43 -2.7 894,349 + HMPREF1078_RS07320 0.43 -2.1 894,350 - HMPREF1078_RS07320 0.43 -1.8 894,390 - HMPREF1078_RS07320 0.47 -1.7 894,394 + HMPREF1078_RS07320 0.48 -3.0 894,472 + HMPREF1078_RS07320 0.55 -0.8 894,472 + HMPREF1078_RS07320 0.55 -0.6 894,473 - HMPREF1078_RS07320 0.55 -1.5 894,476 + HMPREF1078_RS07320 0.56 -1.5 894,476 + HMPREF1078_RS07320 0.56 -3.2 894,476 + HMPREF1078_RS07320 0.56 +0.8 894,477 - HMPREF1078_RS07320 0.56 -3.0 894,492 + HMPREF1078_RS07320 0.57 -3.4 894,609 - HMPREF1078_RS07320 0.69 -1.2 894,647 - HMPREF1078_RS07320 0.73 -2.6 894,647 - HMPREF1078_RS07320 0.73 -1.3 894,647 - HMPREF1078_RS07320 0.73 -3.9 894,692 + HMPREF1078_RS07320 0.77 -2.2 894,693 - HMPREF1078_RS07320 0.77 -0.2 894,694 + HMPREF1078_RS07320 0.77 -1.5 894,695 - HMPREF1078_RS07320 0.77 -1.5 894,695 - HMPREF1078_RS07320 0.77 -2.1 894,780 - HMPREF1078_RS07320 0.86 -4.3 894,781 - HMPREF1078_RS07320 0.86 -0.8 894,782 - HMPREF1078_RS07320 0.86 -3.2 894,856 + -1.3 894,857 - -0.8 894,859 + -3.1 894,870 + -2.3 894,871 - -2.0 894,912 - -2.0 894,912 - -2.1 894,923 + -0.7 894,924 - -0.2 894,924 - -1.3 894,926 + +0.4 894,927 - -2.2 894,937 + +0.8 894,960 - -0.4 895,036 - HMPREF1078_RS07325 0.17 -2.1 895,049 + HMPREF1078_RS07325 0.20 -1.0 895,061 - HMPREF1078_RS07325 0.23 +0.5 895,063 + HMPREF1078_RS07325 0.23 +0.4 895,072 + HMPREF1078_RS07325 0.25 -0.0 895,102 + HMPREF1078_RS07325 0.31 -0.9 895,103 - HMPREF1078_RS07325 0.32 +0.2 895,113 + HMPREF1078_RS07325 0.34 +1.4 895,115 + HMPREF1078_RS07325 0.34 +0.4 895,115 + HMPREF1078_RS07325 0.34 -0.9 895,115 + HMPREF1078_RS07325 0.34 -2.2 895,115 + HMPREF1078_RS07325 0.34 +0.5 895,115 + HMPREF1078_RS07325 0.34 -0.2 895,116 - HMPREF1078_RS07325 0.34 +0.1 895,116 - HMPREF1078_RS07325 0.34 -0.9 895,116 - HMPREF1078_RS07325 0.34 -0.2 895,120 + HMPREF1078_RS07325 0.35 -0.2 895,120 + HMPREF1078_RS07325 0.35 -0.8 895,121 - HMPREF1078_RS07325 0.35 +1.1 895,258 + HMPREF1078_RS07325 0.65 -1.2 895,267 - HMPREF1078_RS07325 0.66 +1.8 895,267 - HMPREF1078_RS07325 0.66 +1.6 895,267 - HMPREF1078_RS07325 0.66 +1.8 895,267 - HMPREF1078_RS07325 0.66 +0.6 895,268 + HMPREF1078_RS07325 0.67 -1.6 895,269 - HMPREF1078_RS07325 0.67 -0.5 895,269 - HMPREF1078_RS07325 0.67 +0.4 895,270 + HMPREF1078_RS07325 0.67 -0.9 895,270 + HMPREF1078_RS07325 0.67 +0.5 895,271 - HMPREF1078_RS07325 0.67 -0.4 895,377 - HMPREF1078_RS07325 0.90 +0.5 895,395 + -1.8 895,424 + +0.7 895,464 + +0.2 895,522 + +0.8 895,524 + +0.0 895,552 - -1.8 895,552 - -2.2 895,586 - -0.5 895,593 + -0.8 895,631 + +0.9 895,632 - -0.1 895,643 + +0.9 895,643 + -1.2 895,689 + -0.8 895,690 - -0.8 895,709 - +4.9 895,712 + -1.2 895,712 + -0.2 895,713 - -0.2 895,713 - +0.9 895,772 - HMPREF1078_RS07330 0.13 -0.3 895,879 + HMPREF1078_RS07330 0.22 +1.1 895,880 - HMPREF1078_RS07330 0.22 +1.1 895,880 - HMPREF1078_RS07330 0.22 +1.7 895,880 - HMPREF1078_RS07330 0.22 +0.2 895,893 + HMPREF1078_RS07330 0.23 -0.2 895,894 - HMPREF1078_RS07330 0.23 -0.5
Or see this region's nucleotide sequence