Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07150 and HMPREF1078_RS07155 are separated by 6 nucleotides HMPREF1078_RS07155 and HMPREF1078_RS07160 are separated by 52 nucleotides HMPREF1078_RS07160 and HMPREF1078_RS07165 overlap by 1 nucleotides
HMPREF1078_RS07150: HMPREF1078_RS07150 - HAMP domain-containing sensor histidine kinase, at 853,037 to 854,410
_RS07150
HMPREF1078_RS07155: HMPREF1078_RS07155 - response regulator transcription factor, at 854,417 to 855,100
_RS07155
HMPREF1078_RS07160: HMPREF1078_RS07160 - DUF4254 domain-containing protein, at 855,153 to 855,758
_RS07160
HMPREF1078_RS07165: HMPREF1078_RS07165 - glycosyltransferase family 9 protein, at 855,758 to 856,786
_RS07165
Position (kb) 855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 854.160 kb on + strand, within HMPREF1078_RS07150 at 854.199 kb on + strand, within HMPREF1078_RS07150 at 854.200 kb on - strand, within HMPREF1078_RS07150 at 854.218 kb on + strand, within HMPREF1078_RS07150 at 854.219 kb on - strand, within HMPREF1078_RS07150 at 854.316 kb on - strand at 854.319 kb on + strand at 854.319 kb on + strand at 854.320 kb on - strand at 854.320 kb on - strand at 854.389 kb on - strand at 854.416 kb on + strand at 854.501 kb on + strand, within HMPREF1078_RS07155 at 854.501 kb on + strand, within HMPREF1078_RS07155 at 854.502 kb on - strand, within HMPREF1078_RS07155 at 854.502 kb on - strand, within HMPREF1078_RS07155 at 854.502 kb on - strand, within HMPREF1078_RS07155 at 854.513 kb on + strand, within HMPREF1078_RS07155 at 854.580 kb on - strand, within HMPREF1078_RS07155 at 854.587 kb on + strand, within HMPREF1078_RS07155 at 854.814 kb on - strand, within HMPREF1078_RS07155 at 854.840 kb on + strand, within HMPREF1078_RS07155 at 854.958 kb on + strand, within HMPREF1078_RS07155 at 854.958 kb on + strand, within HMPREF1078_RS07155 at 854.967 kb on + strand, within HMPREF1078_RS07155 at 854.984 kb on + strand, within HMPREF1078_RS07155 at 854.985 kb on - strand, within HMPREF1078_RS07155 at 854.985 kb on - strand, within HMPREF1078_RS07155 at 855.020 kb on + strand, within HMPREF1078_RS07155 at 855.083 kb on + strand at 855.083 kb on + strand at 855.084 kb on - strand at 855.085 kb on + strand at 855.112 kb on - strand at 855.112 kb on - strand at 855.153 kb on - strand at 855.182 kb on - strand at 855.204 kb on + strand at 855.204 kb on + strand at 855.205 kb on - strand at 855.205 kb on - strand at 855.205 kb on - strand at 855.209 kb on + strand at 855.223 kb on + strand, within HMPREF1078_RS07160 at 855.223 kb on + strand, within HMPREF1078_RS07160 at 855.223 kb on + strand, within HMPREF1078_RS07160 at 855.224 kb on - strand, within HMPREF1078_RS07160 at 855.224 kb on - strand, within HMPREF1078_RS07160 at 855.236 kb on - strand, within HMPREF1078_RS07160 at 855.239 kb on + strand, within HMPREF1078_RS07160 at 855.240 kb on - strand, within HMPREF1078_RS07160 at 855.240 kb on - strand, within HMPREF1078_RS07160 at 855.240 kb on - strand, within HMPREF1078_RS07160 at 855.260 kb on + strand, within HMPREF1078_RS07160 at 855.261 kb on - strand, within HMPREF1078_RS07160 at 855.262 kb on + strand, within HMPREF1078_RS07160 at 855.262 kb on + strand, within HMPREF1078_RS07160 at 855.270 kb on + strand, within HMPREF1078_RS07160 at 855.271 kb on - strand, within HMPREF1078_RS07160 at 855.277 kb on - strand, within HMPREF1078_RS07160 at 855.311 kb on + strand, within HMPREF1078_RS07160 at 855.311 kb on + strand, within HMPREF1078_RS07160 at 855.312 kb on - strand, within HMPREF1078_RS07160 at 855.321 kb on - strand, within HMPREF1078_RS07160 at 855.398 kb on + strand, within HMPREF1078_RS07160 at 855.398 kb on + strand, within HMPREF1078_RS07160 at 855.398 kb on + strand, within HMPREF1078_RS07160 at 855.416 kb on - strand, within HMPREF1078_RS07160 at 855.442 kb on - strand, within HMPREF1078_RS07160 at 855.443 kb on + strand, within HMPREF1078_RS07160 at 855.534 kb on + strand, within HMPREF1078_RS07160 at 855.540 kb on - strand, within HMPREF1078_RS07160 at 855.634 kb on + strand, within HMPREF1078_RS07160 at 855.635 kb on - strand, within HMPREF1078_RS07160 at 855.680 kb on + strand, within HMPREF1078_RS07160 at 855.681 kb on - strand, within HMPREF1078_RS07160 at 855.684 kb on + strand, within HMPREF1078_RS07160 at 855.686 kb on + strand, within HMPREF1078_RS07160 at 855.687 kb on - strand, within HMPREF1078_RS07160 at 855.687 kb on - strand, within HMPREF1078_RS07160 at 855.714 kb on + strand at 855.715 kb on - strand at 855.715 kb on - strand at 855.715 kb on - strand at 855.717 kb on - strand at 855.744 kb on + strand at 855.774 kb on + strand at 855.775 kb on - strand at 855.777 kb on + strand at 855.778 kb on - strand at 855.825 kb on - strand at 855.841 kb on + strand at 855.841 kb on + strand at 855.842 kb on - strand at 855.911 kb on - strand, within HMPREF1078_RS07165 at 855.929 kb on - strand, within HMPREF1078_RS07165 at 856.024 kb on + strand, within HMPREF1078_RS07165 at 856.045 kb on - strand, within HMPREF1078_RS07165 at 856.072 kb on + strand, within HMPREF1078_RS07165 at 856.111 kb on + strand, within HMPREF1078_RS07165 at 856.112 kb on - strand, within HMPREF1078_RS07165 at 856.145 kb on + strand, within HMPREF1078_RS07165 at 856.165 kb on - strand, within HMPREF1078_RS07165 at 856.205 kb on + strand, within HMPREF1078_RS07165 at 856.206 kb on - strand, within HMPREF1078_RS07165 at 856.206 kb on - strand, within HMPREF1078_RS07165 at 856.207 kb on + strand, within HMPREF1078_RS07165 at 856.219 kb on + strand, within HMPREF1078_RS07165 at 856.230 kb on - strand, within HMPREF1078_RS07165 at 856.279 kb on + strand, within HMPREF1078_RS07165 at 856.389 kb on - strand, within HMPREF1078_RS07165 at 856.389 kb on - strand, within HMPREF1078_RS07165 at 856.391 kb on - strand, within HMPREF1078_RS07165 at 856.419 kb on - strand, within HMPREF1078_RS07165 at 856.419 kb on - strand, within HMPREF1078_RS07165 at 856.476 kb on + strand, within HMPREF1078_RS07165 at 856.477 kb on - strand, within HMPREF1078_RS07165 at 856.480 kb on + strand, within HMPREF1078_RS07165 at 856.481 kb on - strand, within HMPREF1078_RS07165 at 856.484 kb on + strand, within HMPREF1078_RS07165 at 856.484 kb on + strand, within HMPREF1078_RS07165 at 856.484 kb on + strand, within HMPREF1078_RS07165 at 856.530 kb on + strand, within HMPREF1078_RS07165 at 856.530 kb on + strand, within HMPREF1078_RS07165 at 856.530 kb on + strand, within HMPREF1078_RS07165 at 856.530 kb on + strand, within HMPREF1078_RS07165 at 856.531 kb on - strand, within HMPREF1078_RS07165 at 856.531 kb on - strand, within HMPREF1078_RS07165 at 856.531 kb on - strand, within HMPREF1078_RS07165 at 856.552 kb on + strand, within HMPREF1078_RS07165 at 856.553 kb on - strand, within HMPREF1078_RS07165 at 856.572 kb on + strand, within HMPREF1078_RS07165 at 856.576 kb on + strand, within HMPREF1078_RS07165 at 856.576 kb on + strand, within HMPREF1078_RS07165 at 856.614 kb on - strand, within HMPREF1078_RS07165 at 856.626 kb on - strand, within HMPREF1078_RS07165 at 856.631 kb on + strand, within HMPREF1078_RS07165 at 856.689 kb on + strand at 856.729 kb on + strand at 856.729 kb on + strand at 856.730 kb on - strand at 856.730 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 854,160 + HMPREF1078_RS07150 0.82 +0.2 854,199 + HMPREF1078_RS07150 0.85 +1.4 854,200 - HMPREF1078_RS07150 0.85 -0.8 854,218 + HMPREF1078_RS07150 0.86 +0.6 854,219 - HMPREF1078_RS07150 0.86 -3.5 854,316 - +1.6 854,319 + -0.1 854,319 + -0.1 854,320 - -2.5 854,320 - +1.2 854,389 - -0.1 854,416 + +0.9 854,501 + HMPREF1078_RS07155 0.12 +0.6 854,501 + HMPREF1078_RS07155 0.12 -0.3 854,502 - HMPREF1078_RS07155 0.12 -1.8 854,502 - HMPREF1078_RS07155 0.12 -0.1 854,502 - HMPREF1078_RS07155 0.12 -0.2 854,513 + HMPREF1078_RS07155 0.14 -2.5 854,580 - HMPREF1078_RS07155 0.24 +2.3 854,587 + HMPREF1078_RS07155 0.25 +1.8 854,814 - HMPREF1078_RS07155 0.58 +0.8 854,840 + HMPREF1078_RS07155 0.62 +1.2 854,958 + HMPREF1078_RS07155 0.79 +0.7 854,958 + HMPREF1078_RS07155 0.79 +0.4 854,967 + HMPREF1078_RS07155 0.80 -0.2 854,984 + HMPREF1078_RS07155 0.83 +0.6 854,985 - HMPREF1078_RS07155 0.83 -0.6 854,985 - HMPREF1078_RS07155 0.83 -1.4 855,020 + HMPREF1078_RS07155 0.88 -1.2 855,083 + +1.6 855,083 + +0.2 855,084 - -2.1 855,085 + +1.6 855,112 - -1.2 855,112 - -2.5 855,153 - -1.2 855,182 - -2.3 855,204 + -2.2 855,204 + -2.9 855,205 - -1.2 855,205 - -1.5 855,205 - -1.2 855,209 + -2.8 855,223 + HMPREF1078_RS07160 0.12 -2.0 855,223 + HMPREF1078_RS07160 0.12 -1.5 855,223 + HMPREF1078_RS07160 0.12 -0.2 855,224 - HMPREF1078_RS07160 0.12 -1.8 855,224 - HMPREF1078_RS07160 0.12 -0.2 855,236 - HMPREF1078_RS07160 0.14 -1.2 855,239 + HMPREF1078_RS07160 0.14 -2.3 855,240 - HMPREF1078_RS07160 0.14 +0.8 855,240 - HMPREF1078_RS07160 0.14 -0.8 855,240 - HMPREF1078_RS07160 0.14 -1.2 855,260 + HMPREF1078_RS07160 0.18 -0.2 855,261 - HMPREF1078_RS07160 0.18 -1.8 855,262 + HMPREF1078_RS07160 0.18 -2.0 855,262 + HMPREF1078_RS07160 0.18 -1.2 855,270 + HMPREF1078_RS07160 0.19 -2.0 855,271 - HMPREF1078_RS07160 0.19 -1.5 855,277 - HMPREF1078_RS07160 0.20 -0.2 855,311 + HMPREF1078_RS07160 0.26 -0.2 855,311 + HMPREF1078_RS07160 0.26 -1.5 855,312 - HMPREF1078_RS07160 0.26 -0.2 855,321 - HMPREF1078_RS07160 0.28 -0.2 855,398 + HMPREF1078_RS07160 0.40 -1.5 855,398 + HMPREF1078_RS07160 0.40 -1.5 855,398 + HMPREF1078_RS07160 0.40 -1.2 855,416 - HMPREF1078_RS07160 0.43 -2.0 855,442 - HMPREF1078_RS07160 0.48 -1.5 855,443 + HMPREF1078_RS07160 0.48 -1.5 855,534 + HMPREF1078_RS07160 0.63 -1.8 855,540 - HMPREF1078_RS07160 0.64 +0.8 855,634 + HMPREF1078_RS07160 0.79 -1.5 855,635 - HMPREF1078_RS07160 0.80 -1.8 855,680 + HMPREF1078_RS07160 0.87 -2.0 855,681 - HMPREF1078_RS07160 0.87 -0.2 855,684 + HMPREF1078_RS07160 0.88 -0.8 855,686 + HMPREF1078_RS07160 0.88 -2.0 855,687 - HMPREF1078_RS07160 0.88 -1.2 855,687 - HMPREF1078_RS07160 0.88 -1.8 855,714 + -1.2 855,715 - +0.8 855,715 - -2.8 855,715 - -0.8 855,717 - -2.5 855,744 + -1.5 855,774 + -1.2 855,775 - +0.8 855,777 + +0.8 855,778 - -0.8 855,825 - -1.2 855,841 + -0.2 855,841 + -1.5 855,842 - -1.8 855,911 - HMPREF1078_RS07165 0.15 -1.5 855,929 - HMPREF1078_RS07165 0.17 -1.2 856,024 + HMPREF1078_RS07165 0.26 +0.8 856,045 - HMPREF1078_RS07165 0.28 -1.5 856,072 + HMPREF1078_RS07165 0.31 -0.2 856,111 + HMPREF1078_RS07165 0.34 -1.5 856,112 - HMPREF1078_RS07165 0.34 -0.2 856,145 + HMPREF1078_RS07165 0.38 -1.5 856,165 - HMPREF1078_RS07165 0.40 -1.8 856,205 + HMPREF1078_RS07165 0.43 -0.8 856,206 - HMPREF1078_RS07165 0.44 -0.8 856,206 - HMPREF1078_RS07165 0.44 +0.8 856,207 + HMPREF1078_RS07165 0.44 -1.2 856,219 + HMPREF1078_RS07165 0.45 +0.8 856,230 - HMPREF1078_RS07165 0.46 -2.2 856,279 + HMPREF1078_RS07165 0.51 -2.8 856,389 - HMPREF1078_RS07165 0.61 -1.2 856,389 - HMPREF1078_RS07165 0.61 +0.8 856,391 - HMPREF1078_RS07165 0.62 -0.2 856,419 - HMPREF1078_RS07165 0.64 -1.5 856,419 - HMPREF1078_RS07165 0.64 -1.8 856,476 + HMPREF1078_RS07165 0.70 -0.2 856,477 - HMPREF1078_RS07165 0.70 -1.2 856,480 + HMPREF1078_RS07165 0.70 -1.2 856,481 - HMPREF1078_RS07165 0.70 -1.2 856,484 + HMPREF1078_RS07165 0.71 -2.5 856,484 + HMPREF1078_RS07165 0.71 -0.8 856,484 + HMPREF1078_RS07165 0.71 -2.8 856,530 + HMPREF1078_RS07165 0.75 -2.3 856,530 + HMPREF1078_RS07165 0.75 -1.5 856,530 + HMPREF1078_RS07165 0.75 +0.8 856,530 + HMPREF1078_RS07165 0.75 -2.6 856,531 - HMPREF1078_RS07165 0.75 -1.5 856,531 - HMPREF1078_RS07165 0.75 -1.2 856,531 - HMPREF1078_RS07165 0.75 -2.5 856,552 + HMPREF1078_RS07165 0.77 -2.0 856,553 - HMPREF1078_RS07165 0.77 -2.5 856,572 + HMPREF1078_RS07165 0.79 -0.2 856,576 + HMPREF1078_RS07165 0.79 -2.2 856,576 + HMPREF1078_RS07165 0.79 -1.2 856,614 - HMPREF1078_RS07165 0.83 -2.8 856,626 - HMPREF1078_RS07165 0.84 -2.2 856,631 + HMPREF1078_RS07165 0.85 -1.5 856,689 + -2.0 856,729 + +0.8 856,729 + -0.8 856,730 - -1.8 856,730 - -0.2
Or see this region's nucleotide sequence