Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06835 and HMPREF1078_RS06840 are separated by 1 nucleotides HMPREF1078_RS06840 and HMPREF1078_RS06845 are separated by 2 nucleotides
HMPREF1078_RS06835: HMPREF1078_RS06835 - tRNA epoxyqueuosine(34) reductase QueG, at 771,158 to 772,165
_RS06835
HMPREF1078_RS06840: HMPREF1078_RS06840 - polysaccharide deacetylase family protein, at 772,167 to 772,775
_RS06840
HMPREF1078_RS06845: HMPREF1078_RS06845 - DUF2723 domain-containing protein, at 772,778 to 776,017
_RS06845
Position (kb) 772
773 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 771.167 kb on + strand at 771.173 kb on - strand at 771.176 kb on + strand at 771.177 kb on - strand at 771.232 kb on + strand at 771.233 kb on - strand at 771.264 kb on - strand, within HMPREF1078_RS06835 at 771.314 kb on + strand, within HMPREF1078_RS06835 at 771.375 kb on + strand, within HMPREF1078_RS06835 at 771.441 kb on + strand, within HMPREF1078_RS06835 at 771.442 kb on - strand, within HMPREF1078_RS06835 at 771.616 kb on + strand, within HMPREF1078_RS06835 at 771.670 kb on - strand, within HMPREF1078_RS06835 at 771.717 kb on - strand, within HMPREF1078_RS06835 at 771.839 kb on + strand, within HMPREF1078_RS06835 at 771.840 kb on - strand, within HMPREF1078_RS06835 at 771.840 kb on - strand, within HMPREF1078_RS06835 at 771.894 kb on + strand, within HMPREF1078_RS06835 at 771.937 kb on - strand, within HMPREF1078_RS06835 at 772.022 kb on - strand, within HMPREF1078_RS06835 at 772.023 kb on + strand, within HMPREF1078_RS06835 at 772.023 kb on + strand, within HMPREF1078_RS06835 at 772.023 kb on + strand, within HMPREF1078_RS06835 at 772.024 kb on - strand, within HMPREF1078_RS06835 at 772.053 kb on - strand, within HMPREF1078_RS06835 at 772.186 kb on + strand at 772.187 kb on - strand at 772.273 kb on - strand, within HMPREF1078_RS06840 at 772.291 kb on + strand, within HMPREF1078_RS06840 at 772.339 kb on + strand, within HMPREF1078_RS06840 at 772.446 kb on + strand, within HMPREF1078_RS06840 at 772.511 kb on + strand, within HMPREF1078_RS06840 at 772.512 kb on - strand, within HMPREF1078_RS06840 at 772.512 kb on - strand, within HMPREF1078_RS06840 at 772.512 kb on - strand, within HMPREF1078_RS06840 at 772.512 kb on - strand, within HMPREF1078_RS06840 at 772.514 kb on - strand, within HMPREF1078_RS06840 at 772.534 kb on - strand, within HMPREF1078_RS06840 at 772.555 kb on - strand, within HMPREF1078_RS06840 at 772.565 kb on - strand, within HMPREF1078_RS06840 at 772.565 kb on - strand, within HMPREF1078_RS06840 at 772.625 kb on - strand, within HMPREF1078_RS06840 at 772.625 kb on - strand, within HMPREF1078_RS06840 at 772.633 kb on - strand, within HMPREF1078_RS06840 at 772.633 kb on - strand, within HMPREF1078_RS06840 at 772.633 kb on - strand, within HMPREF1078_RS06840 at 772.636 kb on - strand, within HMPREF1078_RS06840 at 772.636 kb on - strand, within HMPREF1078_RS06840 at 772.636 kb on - strand, within HMPREF1078_RS06840 at 772.636 kb on - strand, within HMPREF1078_RS06840 at 772.636 kb on - strand, within HMPREF1078_RS06840 at 772.637 kb on + strand, within HMPREF1078_RS06840 at 772.637 kb on + strand, within HMPREF1078_RS06840 at 772.637 kb on + strand, within HMPREF1078_RS06840 at 772.638 kb on - strand, within HMPREF1078_RS06840 at 772.638 kb on - strand, within HMPREF1078_RS06840 at 772.645 kb on - strand, within HMPREF1078_RS06840 at 772.690 kb on + strand, within HMPREF1078_RS06840 at 772.690 kb on + strand, within HMPREF1078_RS06840 at 772.691 kb on - strand, within HMPREF1078_RS06840 at 772.691 kb on - strand, within HMPREF1078_RS06840 at 772.692 kb on + strand, within HMPREF1078_RS06840 at 772.692 kb on + strand, within HMPREF1078_RS06840 at 772.692 kb on + strand, within HMPREF1078_RS06840 at 772.692 kb on + strand, within HMPREF1078_RS06840 at 772.693 kb on - strand, within HMPREF1078_RS06840 at 772.693 kb on - strand, within HMPREF1078_RS06840 at 772.693 kb on - strand, within HMPREF1078_RS06840 at 772.726 kb on - strand at 772.767 kb on + strand at 772.768 kb on - strand at 772.770 kb on - strand at 772.770 kb on - strand at 772.775 kb on + strand at 772.776 kb on - strand at 772.776 kb on - strand at 772.779 kb on + strand at 772.779 kb on + strand at 772.779 kb on + strand at 772.780 kb on - strand at 772.780 kb on - strand at 772.780 kb on - strand at 772.780 kb on - strand at 772.838 kb on - strand at 772.857 kb on + strand at 772.857 kb on + strand at 772.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 771,167 + -0.5 771,173 - -0.1 771,176 + -0.6 771,177 - -0.8 771,232 + -0.2 771,233 - +1.1 771,264 - HMPREF1078_RS06835 0.11 +0.4 771,314 + HMPREF1078_RS06835 0.15 -1.5 771,375 + HMPREF1078_RS06835 0.22 -0.8 771,441 + HMPREF1078_RS06835 0.28 +1.8 771,442 - HMPREF1078_RS06835 0.28 +0.7 771,616 + HMPREF1078_RS06835 0.45 +0.1 771,670 - HMPREF1078_RS06835 0.51 +1.2 771,717 - HMPREF1078_RS06835 0.55 +0.1 771,839 + HMPREF1078_RS06835 0.68 +0.8 771,840 - HMPREF1078_RS06835 0.68 -2.0 771,840 - HMPREF1078_RS06835 0.68 +0.2 771,894 + HMPREF1078_RS06835 0.73 -1.3 771,937 - HMPREF1078_RS06835 0.77 -0.2 772,022 - HMPREF1078_RS06835 0.86 -0.8 772,023 + HMPREF1078_RS06835 0.86 -1.3 772,023 + HMPREF1078_RS06835 0.86 +2.0 772,023 + HMPREF1078_RS06835 0.86 -0.1 772,024 - HMPREF1078_RS06835 0.86 +0.2 772,053 - HMPREF1078_RS06835 0.89 -0.8 772,186 + -2.8 772,187 - -3.6 772,273 - HMPREF1078_RS06840 0.17 -2.2 772,291 + HMPREF1078_RS06840 0.20 -1.5 772,339 + HMPREF1078_RS06840 0.28 -2.8 772,446 + HMPREF1078_RS06840 0.46 -0.2 772,511 + HMPREF1078_RS06840 0.56 -2.2 772,512 - HMPREF1078_RS06840 0.57 -2.1 772,512 - HMPREF1078_RS06840 0.57 -2.0 772,512 - HMPREF1078_RS06840 0.57 -0.5 772,512 - HMPREF1078_RS06840 0.57 -1.6 772,514 - HMPREF1078_RS06840 0.57 -1.2 772,534 - HMPREF1078_RS06840 0.60 -1.3 772,555 - HMPREF1078_RS06840 0.64 -2.8 772,565 - HMPREF1078_RS06840 0.65 -2.0 772,565 - HMPREF1078_RS06840 0.65 -2.6 772,625 - HMPREF1078_RS06840 0.75 -1.2 772,625 - HMPREF1078_RS06840 0.75 -2.5 772,633 - HMPREF1078_RS06840 0.77 -2.9 772,633 - HMPREF1078_RS06840 0.77 -1.8 772,633 - HMPREF1078_RS06840 0.77 -2.0 772,636 - HMPREF1078_RS06840 0.77 -2.2 772,636 - HMPREF1078_RS06840 0.77 -3.3 772,636 - HMPREF1078_RS06840 0.77 +0.4 772,636 - HMPREF1078_RS06840 0.77 -1.9 772,636 - HMPREF1078_RS06840 0.77 -1.0 772,637 + HMPREF1078_RS06840 0.77 -3.0 772,637 + HMPREF1078_RS06840 0.77 -0.6 772,637 + HMPREF1078_RS06840 0.77 -2.0 772,638 - HMPREF1078_RS06840 0.77 +1.3 772,638 - HMPREF1078_RS06840 0.77 -0.9 772,645 - HMPREF1078_RS06840 0.78 -2.9 772,690 + HMPREF1078_RS06840 0.86 -3.6 772,690 + HMPREF1078_RS06840 0.86 -2.8 772,691 - HMPREF1078_RS06840 0.86 -2.9 772,691 - HMPREF1078_RS06840 0.86 +0.8 772,692 + HMPREF1078_RS06840 0.86 -1.1 772,692 + HMPREF1078_RS06840 0.86 -2.9 772,692 + HMPREF1078_RS06840 0.86 -3.1 772,692 + HMPREF1078_RS06840 0.86 -0.9 772,693 - HMPREF1078_RS06840 0.86 -2.0 772,693 - HMPREF1078_RS06840 0.86 -2.0 772,693 - HMPREF1078_RS06840 0.86 -0.8 772,726 - -3.6 772,767 + -2.3 772,768 - -1.2 772,770 - -1.3 772,770 - -2.2 772,775 + -1.7 772,776 - +0.9 772,776 - -2.0 772,779 + -1.2 772,779 + -1.5 772,779 + -2.5 772,780 - +0.2 772,780 - +0.4 772,780 - -0.6 772,780 - -1.2 772,838 - +0.6 772,857 + -2.3 772,857 + -2.2 772,858 - -4.1
Or see this region's nucleotide sequence