Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06735 and HMPREF1078_RS06740 are separated by 152 nucleotides HMPREF1078_RS06740 and HMPREF1078_RS06745 overlap by 4 nucleotides HMPREF1078_RS06745 and HMPREF1078_RS06750 overlap by 11 nucleotides HMPREF1078_RS06750 and HMPREF1078_RS06755 overlap by 1 nucleotides HMPREF1078_RS06755 and HMPREF1078_RS06760 are separated by 3 nucleotides
HMPREF1078_RS06735: HMPREF1078_RS06735 - Gfo/Idh/MocA family oxidoreductase, at 751,186 to 752,622
_RS06735
HMPREF1078_RS06740: HMPREF1078_RS06740 - DUF4271 domain-containing protein, at 752,775 to 753,503
_RS06740
HMPREF1078_RS06745: HMPREF1078_RS06745 - uroporphyrinogen-III synthase, at 753,500 to 754,267
_RS06745
HMPREF1078_RS06750: HMPREF1078_RS06750 - ribonuclease P protein component, at 754,257 to 754,643
_RS06750
HMPREF1078_RS06755: HMPREF1078_RS06755 - membrane protein insertion efficiency factor YidD, at 754,643 to 754,864
_RS06755
HMPREF1078_RS06760: HMPREF1078_RS06760 - TatD family hydrolase, at 754,868 to 755,500
_RS06760
Position (kb) 753
754
755 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 752.609 kb on - strand at 752.609 kb on - strand at 752.611 kb on + strand at 752.611 kb on + strand at 752.611 kb on + strand at 752.612 kb on - strand at 752.616 kb on + strand at 752.633 kb on - strand at 752.646 kb on - strand at 752.724 kb on - strand at 752.747 kb on - strand at 752.760 kb on + strand at 752.760 kb on + strand at 752.782 kb on + strand at 752.783 kb on - strand at 752.783 kb on - strand at 752.793 kb on + strand at 752.794 kb on - strand at 752.794 kb on - strand at 752.794 kb on - strand at 752.864 kb on + strand, within HMPREF1078_RS06740 at 752.954 kb on - strand, within HMPREF1078_RS06740 at 752.965 kb on + strand, within HMPREF1078_RS06740 at 752.965 kb on + strand, within HMPREF1078_RS06740 at 753.056 kb on - strand, within HMPREF1078_RS06740 at 753.057 kb on + strand, within HMPREF1078_RS06740 at 753.094 kb on + strand, within HMPREF1078_RS06740 at 753.191 kb on + strand, within HMPREF1078_RS06740 at 753.196 kb on - strand, within HMPREF1078_RS06740 at 753.197 kb on + strand, within HMPREF1078_RS06740 at 753.216 kb on + strand, within HMPREF1078_RS06740 at 753.224 kb on + strand, within HMPREF1078_RS06740 at 753.225 kb on - strand, within HMPREF1078_RS06740 at 753.225 kb on - strand, within HMPREF1078_RS06740 at 753.225 kb on - strand, within HMPREF1078_RS06740 at 753.288 kb on + strand, within HMPREF1078_RS06740 at 753.288 kb on + strand, within HMPREF1078_RS06740 at 753.288 kb on + strand, within HMPREF1078_RS06740 at 753.288 kb on + strand, within HMPREF1078_RS06740 at 753.289 kb on - strand, within HMPREF1078_RS06740 at 753.292 kb on + strand, within HMPREF1078_RS06740 at 753.292 kb on + strand, within HMPREF1078_RS06740 at 753.292 kb on + strand, within HMPREF1078_RS06740 at 753.292 kb on + strand, within HMPREF1078_RS06740 at 753.293 kb on - strand, within HMPREF1078_RS06740 at 753.293 kb on - strand, within HMPREF1078_RS06740 at 753.296 kb on + strand, within HMPREF1078_RS06740 at 753.296 kb on + strand, within HMPREF1078_RS06740 at 753.297 kb on - strand, within HMPREF1078_RS06740 at 753.298 kb on + strand, within HMPREF1078_RS06740 at 753.317 kb on + strand, within HMPREF1078_RS06740 at 753.317 kb on + strand, within HMPREF1078_RS06740 at 753.324 kb on + strand, within HMPREF1078_RS06740 at 753.362 kb on - strand, within HMPREF1078_RS06740 at 753.396 kb on + strand, within HMPREF1078_RS06740 at 753.396 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.408 kb on + strand, within HMPREF1078_RS06740 at 753.447 kb on + strand at 753.455 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.578 kb on + strand, within HMPREF1078_RS06745 at 753.610 kb on + strand, within HMPREF1078_RS06745 at 753.615 kb on + strand, within HMPREF1078_RS06745 at 753.615 kb on + strand, within HMPREF1078_RS06745 at 753.631 kb on + strand, within HMPREF1078_RS06745 at 753.670 kb on + strand, within HMPREF1078_RS06745 at 753.761 kb on + strand, within HMPREF1078_RS06745 at 753.803 kb on + strand, within HMPREF1078_RS06745 at 753.805 kb on + strand, within HMPREF1078_RS06745 at 753.812 kb on + strand, within HMPREF1078_RS06745 at 753.812 kb on + strand, within HMPREF1078_RS06745 at 753.823 kb on + strand, within HMPREF1078_RS06745 at 753.823 kb on + strand, within HMPREF1078_RS06745 at 753.865 kb on + strand, within HMPREF1078_RS06745 at 753.896 kb on + strand, within HMPREF1078_RS06745 at 753.922 kb on + strand, within HMPREF1078_RS06745 at 753.922 kb on + strand, within HMPREF1078_RS06745 at 753.922 kb on + strand, within HMPREF1078_RS06745 at 753.923 kb on - strand, within HMPREF1078_RS06745 at 753.940 kb on + strand, within HMPREF1078_RS06745 at 753.940 kb on + strand, within HMPREF1078_RS06745 at 753.979 kb on + strand, within HMPREF1078_RS06745 at 753.979 kb on + strand, within HMPREF1078_RS06745 at 753.979 kb on + strand, within HMPREF1078_RS06745 at 753.983 kb on + strand, within HMPREF1078_RS06745 at 754.009 kb on + strand, within HMPREF1078_RS06745 at 754.033 kb on + strand, within HMPREF1078_RS06745 at 754.033 kb on + strand, within HMPREF1078_RS06745 at 754.033 kb on + strand, within HMPREF1078_RS06745 at 754.105 kb on + strand, within HMPREF1078_RS06745 at 754.105 kb on + strand, within HMPREF1078_RS06745 at 754.105 kb on + strand, within HMPREF1078_RS06745 at 754.107 kb on + strand, within HMPREF1078_RS06745 at 754.223 kb on + strand at 754.243 kb on + strand at 754.246 kb on + strand at 754.624 kb on + strand at 754.624 kb on + strand at 754.625 kb on - strand at 754.645 kb on - strand at 754.682 kb on + strand, within HMPREF1078_RS06755 at 754.699 kb on + strand, within HMPREF1078_RS06755 at 754.730 kb on + strand, within HMPREF1078_RS06755 at 754.738 kb on + strand, within HMPREF1078_RS06755 at 754.751 kb on + strand, within HMPREF1078_RS06755 at 754.752 kb on - strand, within HMPREF1078_RS06755 at 754.796 kb on + strand, within HMPREF1078_RS06755 at 754.797 kb on - strand, within HMPREF1078_RS06755 at 754.862 kb on + strand at 754.874 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.888 kb on + strand at 754.888 kb on + strand at 754.888 kb on + strand at 754.888 kb on + strand at 754.889 kb on - strand at 754.889 kb on - strand at 754.926 kb on + strand at 754.926 kb on + strand at 754.926 kb on + strand at 754.945 kb on + strand, within HMPREF1078_RS06760 at 754.945 kb on + strand, within HMPREF1078_RS06760 at 754.945 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 755.000 kb on - strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.004 kb on - strand, within HMPREF1078_RS06760 at 755.004 kb on - strand, within HMPREF1078_RS06760 at 755.004 kb on - strand, within HMPREF1078_RS06760 at 755.005 kb on + strand, within HMPREF1078_RS06760 at 755.005 kb on + strand, within HMPREF1078_RS06760 at 755.005 kb on + strand, within HMPREF1078_RS06760 at 755.006 kb on - strand, within HMPREF1078_RS06760 at 755.006 kb on - strand, within HMPREF1078_RS06760 at 755.006 kb on - strand, within HMPREF1078_RS06760 at 755.006 kb on - strand, within HMPREF1078_RS06760 at 755.058 kb on + strand, within HMPREF1078_RS06760 at 755.066 kb on - strand, within HMPREF1078_RS06760 at 755.235 kb on + strand, within HMPREF1078_RS06760 at 755.246 kb on - strand, within HMPREF1078_RS06760 at 755.247 kb on + strand, within HMPREF1078_RS06760
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 752,609 - +0.2 752,609 - +1.8 752,611 + -0.9 752,611 + -1.5 752,611 + +1.1 752,612 - -0.7 752,616 + -0.7 752,633 - -2.0 752,646 - -1.0 752,724 - -2.0 752,747 - -1.9 752,760 + -0.8 752,760 + +0.2 752,782 + -2.7 752,783 - -4.3 752,783 - -3.1 752,793 + -4.8 752,794 - -3.3 752,794 - -4.6 752,794 - -3.1 752,864 + HMPREF1078_RS06740 0.12 -3.7 752,954 - HMPREF1078_RS06740 0.25 -0.8 752,965 + HMPREF1078_RS06740 0.26 -3.1 752,965 + HMPREF1078_RS06740 0.26 -2.3 753,056 - HMPREF1078_RS06740 0.39 -1.8 753,057 + HMPREF1078_RS06740 0.39 -3.7 753,094 + HMPREF1078_RS06740 0.44 -4.4 753,191 + HMPREF1078_RS06740 0.57 -3.3 753,196 - HMPREF1078_RS06740 0.58 -2.5 753,197 + HMPREF1078_RS06740 0.58 -1.2 753,216 + HMPREF1078_RS06740 0.60 -3.9 753,224 + HMPREF1078_RS06740 0.62 -3.0 753,225 - HMPREF1078_RS06740 0.62 -4.6 753,225 - HMPREF1078_RS06740 0.62 -3.6 753,225 - HMPREF1078_RS06740 0.62 -0.2 753,288 + HMPREF1078_RS06740 0.70 -3.4 753,288 + HMPREF1078_RS06740 0.70 -3.3 753,288 + HMPREF1078_RS06740 0.70 -2.3 753,288 + HMPREF1078_RS06740 0.70 -4.7 753,289 - HMPREF1078_RS06740 0.71 -4.2 753,292 + HMPREF1078_RS06740 0.71 -4.7 753,292 + HMPREF1078_RS06740 0.71 -3.3 753,292 + HMPREF1078_RS06740 0.71 -3.0 753,292 + HMPREF1078_RS06740 0.71 -4.1 753,293 - HMPREF1078_RS06740 0.71 -4.2 753,293 - HMPREF1078_RS06740 0.71 -4.6 753,296 + HMPREF1078_RS06740 0.71 -1.5 753,296 + HMPREF1078_RS06740 0.71 -3.3 753,297 - HMPREF1078_RS06740 0.72 -3.3 753,298 + HMPREF1078_RS06740 0.72 -4.9 753,317 + HMPREF1078_RS06740 0.74 -4.4 753,317 + HMPREF1078_RS06740 0.74 -2.2 753,324 + HMPREF1078_RS06740 0.75 -2.3 753,362 - HMPREF1078_RS06740 0.81 +0.8 753,396 + HMPREF1078_RS06740 0.85 -5.9 753,396 + HMPREF1078_RS06740 0.85 -1.2 753,400 + HMPREF1078_RS06740 0.86 -5.7 753,400 + HMPREF1078_RS06740 0.86 -5.3 753,400 + HMPREF1078_RS06740 0.86 -3.3 753,400 + HMPREF1078_RS06740 0.86 -5.7 753,400 + HMPREF1078_RS06740 0.86 -4.6 753,400 + HMPREF1078_RS06740 0.86 -2.5 753,408 + HMPREF1078_RS06740 0.87 -3.9 753,447 + +0.8 753,455 + -2.5 753,462 + -2.0 753,462 + -2.1 753,462 + -2.5 753,578 + HMPREF1078_RS06745 0.10 -0.2 753,610 + HMPREF1078_RS06745 0.14 -1.8 753,615 + HMPREF1078_RS06745 0.15 -2.3 753,615 + HMPREF1078_RS06745 0.15 -0.2 753,631 + HMPREF1078_RS06745 0.17 -1.5 753,670 + HMPREF1078_RS06745 0.22 -0.8 753,761 + HMPREF1078_RS06745 0.34 -0.2 753,803 + HMPREF1078_RS06745 0.39 +0.8 753,805 + HMPREF1078_RS06745 0.40 +0.8 753,812 + HMPREF1078_RS06745 0.41 -3.6 753,812 + HMPREF1078_RS06745 0.41 -0.2 753,823 + HMPREF1078_RS06745 0.42 -2.2 753,823 + HMPREF1078_RS06745 0.42 -2.8 753,865 + HMPREF1078_RS06745 0.48 -0.2 753,896 + HMPREF1078_RS06745 0.52 -0.2 753,922 + HMPREF1078_RS06745 0.55 -0.8 753,922 + HMPREF1078_RS06745 0.55 -1.2 753,922 + HMPREF1078_RS06745 0.55 -1.8 753,923 - HMPREF1078_RS06745 0.55 -2.2 753,940 + HMPREF1078_RS06745 0.57 -1.2 753,940 + HMPREF1078_RS06745 0.57 -2.5 753,979 + HMPREF1078_RS06745 0.62 -1.8 753,979 + HMPREF1078_RS06745 0.62 -1.8 753,979 + HMPREF1078_RS06745 0.62 -2.8 753,983 + HMPREF1078_RS06745 0.63 -1.5 754,009 + HMPREF1078_RS06745 0.66 -1.5 754,033 + HMPREF1078_RS06745 0.69 -0.2 754,033 + HMPREF1078_RS06745 0.69 -1.8 754,033 + HMPREF1078_RS06745 0.69 -2.5 754,105 + HMPREF1078_RS06745 0.79 -0.2 754,105 + HMPREF1078_RS06745 0.79 +0.8 754,105 + HMPREF1078_RS06745 0.79 -2.0 754,107 + HMPREF1078_RS06745 0.79 -1.8 754,223 + -2.8 754,243 + -0.4 754,246 + -1.5 754,624 + +0.8 754,624 + -1.5 754,625 - -1.8 754,645 - -0.6 754,682 + HMPREF1078_RS06755 0.18 -2.0 754,699 + HMPREF1078_RS06755 0.25 -0.2 754,730 + HMPREF1078_RS06755 0.39 +0.4 754,738 + HMPREF1078_RS06755 0.43 +2.1 754,751 + HMPREF1078_RS06755 0.49 +1.2 754,752 - HMPREF1078_RS06755 0.49 +0.8 754,796 + HMPREF1078_RS06755 0.69 -2.1 754,797 - HMPREF1078_RS06755 0.69 -1.0 754,862 + -1.2 754,874 + +0.6 754,884 + +1.6 754,884 + -0.5 754,884 + +0.2 754,884 + +0.1 754,884 + +1.2 754,884 + -0.5 754,884 + -1.4 754,884 + -1.3 754,884 + -0.2 754,884 + +1.6 754,885 - -1.5 754,885 - +1.2 754,885 - +1.8 754,885 - +0.0 754,885 - -0.7 754,885 - -0.8 754,888 + -1.0 754,888 + +0.1 754,888 + +1.0 754,888 + +0.1 754,889 - +0.8 754,889 - +1.2 754,926 + +0.0 754,926 + +0.1 754,926 + -1.5 754,945 + HMPREF1078_RS06760 0.12 +0.4 754,945 + HMPREF1078_RS06760 0.12 -0.7 754,945 + HMPREF1078_RS06760 0.12 -1.9 754,999 + HMPREF1078_RS06760 0.21 -0.5 754,999 + HMPREF1078_RS06760 0.21 -1.0 754,999 + HMPREF1078_RS06760 0.21 +0.2 754,999 + HMPREF1078_RS06760 0.21 +1.0 754,999 + HMPREF1078_RS06760 0.21 +0.5 754,999 + HMPREF1078_RS06760 0.21 -0.8 754,999 + HMPREF1078_RS06760 0.21 -0.5 755,000 - HMPREF1078_RS06760 0.21 +0.7 755,001 + HMPREF1078_RS06760 0.21 -0.9 755,001 + HMPREF1078_RS06760 0.21 +0.1 755,001 + HMPREF1078_RS06760 0.21 +0.7 755,001 + HMPREF1078_RS06760 0.21 -0.5 755,001 + HMPREF1078_RS06760 0.21 +1.1 755,001 + HMPREF1078_RS06760 0.21 -2.0 755,002 - HMPREF1078_RS06760 0.21 -2.2 755,002 - HMPREF1078_RS06760 0.21 -0.8 755,002 - HMPREF1078_RS06760 0.21 +0.8 755,002 - HMPREF1078_RS06760 0.21 +0.6 755,002 - HMPREF1078_RS06760 0.21 +1.1 755,002 - HMPREF1078_RS06760 0.21 +0.8 755,002 - HMPREF1078_RS06760 0.21 +1.1 755,003 + HMPREF1078_RS06760 0.21 -1.2 755,003 + HMPREF1078_RS06760 0.21 +0.2 755,003 + HMPREF1078_RS06760 0.21 +0.8 755,003 + HMPREF1078_RS06760 0.21 +0.5 755,003 + HMPREF1078_RS06760 0.21 +0.2 755,003 + HMPREF1078_RS06760 0.21 +0.1 755,003 + HMPREF1078_RS06760 0.21 +0.0 755,003 + HMPREF1078_RS06760 0.21 -1.4 755,003 + HMPREF1078_RS06760 0.21 +2.3 755,004 - HMPREF1078_RS06760 0.21 +1.3 755,004 - HMPREF1078_RS06760 0.21 +0.8 755,004 - HMPREF1078_RS06760 0.21 -0.2 755,005 + HMPREF1078_RS06760 0.22 -0.2 755,005 + HMPREF1078_RS06760 0.22 -0.4 755,005 + HMPREF1078_RS06760 0.22 +0.0 755,006 - HMPREF1078_RS06760 0.22 -0.3 755,006 - HMPREF1078_RS06760 0.22 -0.2 755,006 - HMPREF1078_RS06760 0.22 -0.1 755,006 - HMPREF1078_RS06760 0.22 -1.5 755,058 + HMPREF1078_RS06760 0.30 -0.3 755,066 - HMPREF1078_RS06760 0.31 -0.5 755,235 + HMPREF1078_RS06760 0.58 +0.1 755,246 - HMPREF1078_RS06760 0.60 +0.6 755,247 + HMPREF1078_RS06760 0.60 +2.0
Or see this region's nucleotide sequence