Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05970 and HMPREF1078_RS05975 overlap by 1 nucleotides HMPREF1078_RS05975 and HMPREF1078_RS05980 are separated by 26 nucleotides
HMPREF1078_RS05970: HMPREF1078_RS05970 - ABC transporter permease, at 530,953 to 533,358
_RS05970
HMPREF1078_RS05975: HMPREF1078_RS05975 - HlyD family efflux transporter periplasmic adaptor subunit, at 533,358 to 534,605
_RS05975
HMPREF1078_RS05980: HMPREF1078_RS05980 - TolC family protein, at 534,632 to 535,993
_RS05980
Position (kb) 533
534
535 Strain fitness (log2 ratio) -2
-1
0
1
2 at 532.492 kb on + strand, within HMPREF1078_RS05970 at 532.513 kb on + strand, within HMPREF1078_RS05970 at 532.514 kb on - strand, within HMPREF1078_RS05970 at 532.522 kb on - strand, within HMPREF1078_RS05970 at 532.522 kb on - strand, within HMPREF1078_RS05970 at 532.522 kb on - strand, within HMPREF1078_RS05970 at 532.554 kb on + strand, within HMPREF1078_RS05970 at 532.700 kb on + strand, within HMPREF1078_RS05970 at 532.701 kb on - strand, within HMPREF1078_RS05970 at 532.701 kb on - strand, within HMPREF1078_RS05970 at 532.705 kb on - strand, within HMPREF1078_RS05970 at 532.705 kb on - strand, within HMPREF1078_RS05970 at 532.705 kb on - strand, within HMPREF1078_RS05970 at 532.775 kb on + strand, within HMPREF1078_RS05970 at 532.776 kb on - strand, within HMPREF1078_RS05970 at 532.909 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.081 kb on - strand, within HMPREF1078_RS05970 at 533.084 kb on + strand, within HMPREF1078_RS05970 at 533.084 kb on + strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.086 kb on - strand, within HMPREF1078_RS05970 at 533.152 kb on - strand at 533.242 kb on + strand at 533.242 kb on + strand at 533.243 kb on - strand at 533.254 kb on - strand at 533.522 kb on - strand, within HMPREF1078_RS05975 at 533.522 kb on - strand, within HMPREF1078_RS05975 at 533.522 kb on - strand, within HMPREF1078_RS05975 at 533.556 kb on - strand, within HMPREF1078_RS05975 at 533.612 kb on - strand, within HMPREF1078_RS05975 at 533.720 kb on - strand, within HMPREF1078_RS05975 at 533.720 kb on - strand, within HMPREF1078_RS05975 at 533.776 kb on + strand, within HMPREF1078_RS05975 at 534.107 kb on + strand, within HMPREF1078_RS05975 at 534.110 kb on - strand, within HMPREF1078_RS05975 at 534.110 kb on - strand, within HMPREF1078_RS05975 at 534.382 kb on + strand, within HMPREF1078_RS05975 at 534.382 kb on + strand, within HMPREF1078_RS05975 at 534.389 kb on + strand, within HMPREF1078_RS05975 at 534.389 kb on + strand, within HMPREF1078_RS05975 at 534.452 kb on + strand, within HMPREF1078_RS05975 at 534.497 kb on + strand at 534.498 kb on - strand at 534.547 kb on - strand at 534.609 kb on - strand at 534.630 kb on - strand at 534.663 kb on + strand at 534.693 kb on + strand at 534.694 kb on - strand at 534.734 kb on - strand at 534.735 kb on + strand at 534.735 kb on + strand at 535.023 kb on + strand, within HMPREF1078_RS05980 at 535.037 kb on - strand, within HMPREF1078_RS05980 at 535.095 kb on + strand, within HMPREF1078_RS05980 at 535.244 kb on - strand, within HMPREF1078_RS05980 at 535.304 kb on - strand, within HMPREF1078_RS05980 at 535.319 kb on - strand, within HMPREF1078_RS05980 at 535.453 kb on - strand, within HMPREF1078_RS05980 at 535.526 kb on + strand, within HMPREF1078_RS05980
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 532,492 + HMPREF1078_RS05970 0.64 -0.9 532,513 + HMPREF1078_RS05970 0.65 -0.8 532,514 - HMPREF1078_RS05970 0.65 +2.1 532,522 - HMPREF1078_RS05970 0.65 -1.3 532,522 - HMPREF1078_RS05970 0.65 -1.4 532,522 - HMPREF1078_RS05970 0.65 -2.1 532,554 + HMPREF1078_RS05970 0.67 +1.6 532,700 + HMPREF1078_RS05970 0.73 -1.1 532,701 - HMPREF1078_RS05970 0.73 -1.0 532,701 - HMPREF1078_RS05970 0.73 +2.5 532,705 - HMPREF1078_RS05970 0.73 -0.6 532,705 - HMPREF1078_RS05970 0.73 -0.1 532,705 - HMPREF1078_RS05970 0.73 -1.3 532,775 + HMPREF1078_RS05970 0.76 +0.3 532,776 - HMPREF1078_RS05970 0.76 -0.8 532,909 + HMPREF1078_RS05970 0.81 +0.3 533,080 + HMPREF1078_RS05970 0.88 +0.7 533,080 + HMPREF1078_RS05970 0.88 -0.1 533,080 + HMPREF1078_RS05970 0.88 -1.3 533,080 + HMPREF1078_RS05970 0.88 -0.6 533,080 + HMPREF1078_RS05970 0.88 -0.8 533,080 + HMPREF1078_RS05970 0.88 -0.9 533,081 - HMPREF1078_RS05970 0.88 +1.2 533,084 + HMPREF1078_RS05970 0.89 -2.4 533,084 + HMPREF1078_RS05970 0.89 -0.1 533,085 - HMPREF1078_RS05970 0.89 +1.9 533,085 - HMPREF1078_RS05970 0.89 +0.3 533,085 - HMPREF1078_RS05970 0.89 +0.2 533,085 - HMPREF1078_RS05970 0.89 -2.6 533,086 - HMPREF1078_RS05970 0.89 +1.9 533,152 - +1.5 533,242 + -0.3 533,242 + -0.1 533,243 - +0.2 533,254 - -0.2 533,522 - HMPREF1078_RS05975 0.13 +0.8 533,522 - HMPREF1078_RS05975 0.13 -2.1 533,522 - HMPREF1078_RS05975 0.13 -0.7 533,556 - HMPREF1078_RS05975 0.16 -1.7 533,612 - HMPREF1078_RS05975 0.20 +1.7 533,720 - HMPREF1078_RS05975 0.29 +2.6 533,720 - HMPREF1078_RS05975 0.29 +2.3 533,776 + HMPREF1078_RS05975 0.33 +0.9 534,107 + HMPREF1078_RS05975 0.60 +2.0 534,110 - HMPREF1078_RS05975 0.60 -0.8 534,110 - HMPREF1078_RS05975 0.60 -1.1 534,382 + HMPREF1078_RS05975 0.82 -0.8 534,382 + HMPREF1078_RS05975 0.82 +0.9 534,389 + HMPREF1078_RS05975 0.83 -0.7 534,389 + HMPREF1078_RS05975 0.83 +0.2 534,452 + HMPREF1078_RS05975 0.88 -2.0 534,497 + +0.9 534,498 - +0.0 534,547 - -0.3 534,609 - -1.7 534,630 - -2.1 534,663 + +0.1 534,693 + -2.2 534,694 - -1.1 534,734 - -0.2 534,735 + +0.0 534,735 + -0.5 535,023 + HMPREF1078_RS05980 0.29 -2.5 535,037 - HMPREF1078_RS05980 0.30 +2.1 535,095 + HMPREF1078_RS05980 0.34 -2.0 535,244 - HMPREF1078_RS05980 0.45 -0.1 535,304 - HMPREF1078_RS05980 0.49 +2.1 535,319 - HMPREF1078_RS05980 0.50 +1.0 535,453 - HMPREF1078_RS05980 0.60 +0.7 535,526 + HMPREF1078_RS05980 0.66 -1.4
Or see this region's nucleotide sequence