Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05605 and HMPREF1078_RS05610 are separated by 40 nucleotides HMPREF1078_RS05610 and HMPREF1078_RS05615 are separated by 82 nucleotides HMPREF1078_RS05615 and HMPREF1078_RS05620 are separated by 62 nucleotides
HMPREF1078_RS05605: HMPREF1078_RS05605 - sugar kinase, at 420,158 to 421,201
_RS05605
HMPREF1078_RS05610: HMPREF1078_RS05610 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 421,242 to 421,910
_RS05610
HMPREF1078_RS05615: HMPREF1078_RS05615 - glucuronate isomerase, at 421,993 to 423,396
_RS05615
HMPREF1078_RS05620: HMPREF1078_RS05620 - tetratricopeptide repeat protein, at 423,459 to 427,052
_RS05620
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 421.005 kb on + strand, within HMPREF1078_RS05605 at 421.005 kb on + strand, within HMPREF1078_RS05605 at 421.040 kb on + strand, within HMPREF1078_RS05605 at 421.041 kb on - strand, within HMPREF1078_RS05605 at 421.041 kb on - strand, within HMPREF1078_RS05605 at 421.055 kb on - strand, within HMPREF1078_RS05605 at 421.056 kb on - strand, within HMPREF1078_RS05605 at 421.134 kb on - strand at 421.298 kb on - strand at 421.412 kb on - strand, within HMPREF1078_RS05610 at 421.476 kb on - strand, within HMPREF1078_RS05610 at 421.476 kb on - strand, within HMPREF1078_RS05610 at 421.503 kb on + strand, within HMPREF1078_RS05610 at 421.569 kb on - strand, within HMPREF1078_RS05610 at 421.587 kb on + strand, within HMPREF1078_RS05610 at 421.588 kb on - strand, within HMPREF1078_RS05610 at 421.589 kb on + strand, within HMPREF1078_RS05610 at 421.589 kb on + strand, within HMPREF1078_RS05610 at 421.590 kb on - strand, within HMPREF1078_RS05610 at 421.590 kb on - strand, within HMPREF1078_RS05610 at 421.590 kb on - strand, within HMPREF1078_RS05610 at 421.637 kb on - strand, within HMPREF1078_RS05610 at 421.676 kb on - strand, within HMPREF1078_RS05610 at 421.724 kb on + strand, within HMPREF1078_RS05610 at 421.724 kb on + strand, within HMPREF1078_RS05610 at 421.724 kb on + strand, within HMPREF1078_RS05610 at 421.725 kb on - strand, within HMPREF1078_RS05610 at 421.725 kb on - strand, within HMPREF1078_RS05610 at 421.747 kb on + strand, within HMPREF1078_RS05610 at 422.051 kb on - strand at 422.126 kb on - strand at 422.172 kb on + strand, within HMPREF1078_RS05615 at 422.173 kb on - strand, within HMPREF1078_RS05615 at 422.272 kb on + strand, within HMPREF1078_RS05615 at 422.272 kb on + strand, within HMPREF1078_RS05615 at 422.273 kb on - strand, within HMPREF1078_RS05615 at 422.291 kb on + strand, within HMPREF1078_RS05615 at 422.319 kb on + strand, within HMPREF1078_RS05615 at 422.322 kb on + strand, within HMPREF1078_RS05615 at 422.371 kb on + strand, within HMPREF1078_RS05615 at 422.433 kb on + strand, within HMPREF1078_RS05615 at 422.434 kb on - strand, within HMPREF1078_RS05615 at 422.450 kb on + strand, within HMPREF1078_RS05615 at 422.450 kb on + strand, within HMPREF1078_RS05615 at 422.490 kb on + strand, within HMPREF1078_RS05615 at 422.491 kb on - strand, within HMPREF1078_RS05615 at 422.575 kb on - strand, within HMPREF1078_RS05615 at 422.575 kb on - strand, within HMPREF1078_RS05615 at 422.578 kb on + strand, within HMPREF1078_RS05615 at 422.578 kb on + strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.579 kb on - strand, within HMPREF1078_RS05615 at 422.711 kb on + strand, within HMPREF1078_RS05615 at 422.711 kb on + strand, within HMPREF1078_RS05615 at 422.716 kb on - strand, within HMPREF1078_RS05615 at 422.716 kb on - strand, within HMPREF1078_RS05615 at 422.720 kb on - strand, within HMPREF1078_RS05615 at 422.722 kb on + strand, within HMPREF1078_RS05615 at 422.736 kb on + strand, within HMPREF1078_RS05615 at 422.760 kb on - strand, within HMPREF1078_RS05615 at 422.760 kb on - strand, within HMPREF1078_RS05615 at 422.775 kb on + strand, within HMPREF1078_RS05615 at 422.775 kb on + strand, within HMPREF1078_RS05615 at 422.831 kb on - strand, within HMPREF1078_RS05615 at 422.867 kb on + strand, within HMPREF1078_RS05615 at 422.867 kb on + strand, within HMPREF1078_RS05615 at 422.917 kb on - strand, within HMPREF1078_RS05615 at 422.917 kb on - strand, within HMPREF1078_RS05615 at 423.028 kb on - strand, within HMPREF1078_RS05615 at 423.034 kb on + strand, within HMPREF1078_RS05615 at 423.035 kb on - strand, within HMPREF1078_RS05615 at 423.041 kb on + strand, within HMPREF1078_RS05615 at 423.042 kb on - strand, within HMPREF1078_RS05615 at 423.042 kb on - strand, within HMPREF1078_RS05615 at 423.080 kb on - strand, within HMPREF1078_RS05615 at 423.239 kb on + strand, within HMPREF1078_RS05615 at 423.245 kb on - strand, within HMPREF1078_RS05615 at 423.259 kb on + strand at 423.279 kb on + strand at 423.279 kb on + strand at 423.279 kb on + strand at 423.280 kb on - strand at 423.358 kb on - strand at 423.365 kb on - strand at 423.365 kb on - strand at 423.410 kb on + strand at 423.547 kb on + strand at 423.548 kb on - strand at 423.566 kb on + strand at 423.566 kb on + strand at 423.567 kb on - strand at 423.567 kb on - strand at 423.600 kb on - strand at 423.600 kb on - strand at 423.621 kb on - strand at 423.653 kb on + strand at 423.978 kb on - strand, within HMPREF1078_RS05620 at 424.008 kb on - strand, within HMPREF1078_RS05620 at 424.008 kb on - strand, within HMPREF1078_RS05620 at 424.086 kb on - strand, within HMPREF1078_RS05620 at 424.104 kb on + strand, within HMPREF1078_RS05620 at 424.105 kb on - strand, within HMPREF1078_RS05620 at 424.119 kb on + strand, within HMPREF1078_RS05620 at 424.119 kb on + strand, within HMPREF1078_RS05620 at 424.119 kb on + strand, within HMPREF1078_RS05620 at 424.363 kb on + strand, within HMPREF1078_RS05620 at 424.389 kb on - strand, within HMPREF1078_RS05620 at 424.389 kb on - strand, within HMPREF1078_RS05620
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 421,005 + HMPREF1078_RS05605 0.81 -0.5 421,005 + HMPREF1078_RS05605 0.81 +0.0 421,040 + HMPREF1078_RS05605 0.84 +1.0 421,041 - HMPREF1078_RS05605 0.85 -1.6 421,041 - HMPREF1078_RS05605 0.85 -1.0 421,055 - HMPREF1078_RS05605 0.86 -3.0 421,056 - HMPREF1078_RS05605 0.86 -1.5 421,134 - -2.1 421,298 - -2.3 421,412 - HMPREF1078_RS05610 0.25 -1.0 421,476 - HMPREF1078_RS05610 0.35 -1.7 421,476 - HMPREF1078_RS05610 0.35 -1.1 421,503 + HMPREF1078_RS05610 0.39 +0.9 421,569 - HMPREF1078_RS05610 0.49 -2.6 421,587 + HMPREF1078_RS05610 0.52 +0.9 421,588 - HMPREF1078_RS05610 0.52 -1.0 421,589 + HMPREF1078_RS05610 0.52 -0.5 421,589 + HMPREF1078_RS05610 0.52 -2.8 421,590 - HMPREF1078_RS05610 0.52 -2.2 421,590 - HMPREF1078_RS05610 0.52 -0.5 421,590 - HMPREF1078_RS05610 0.52 -2.0 421,637 - HMPREF1078_RS05610 0.59 -2.9 421,676 - HMPREF1078_RS05610 0.65 -2.5 421,724 + HMPREF1078_RS05610 0.72 -1.3 421,724 + HMPREF1078_RS05610 0.72 -0.2 421,724 + HMPREF1078_RS05610 0.72 +0.7 421,725 - HMPREF1078_RS05610 0.72 -2.8 421,725 - HMPREF1078_RS05610 0.72 -1.5 421,747 + HMPREF1078_RS05610 0.75 +0.4 422,051 - -1.5 422,126 - -4.0 422,172 + HMPREF1078_RS05615 0.13 -0.5 422,173 - HMPREF1078_RS05615 0.13 -3.0 422,272 + HMPREF1078_RS05615 0.20 -2.3 422,272 + HMPREF1078_RS05615 0.20 -0.7 422,273 - HMPREF1078_RS05615 0.20 -2.3 422,291 + HMPREF1078_RS05615 0.21 -1.8 422,319 + HMPREF1078_RS05615 0.23 -3.0 422,322 + HMPREF1078_RS05615 0.23 -4.0 422,371 + HMPREF1078_RS05615 0.27 -0.9 422,433 + HMPREF1078_RS05615 0.31 -2.1 422,434 - HMPREF1078_RS05615 0.31 -3.7 422,450 + HMPREF1078_RS05615 0.33 -3.3 422,450 + HMPREF1078_RS05615 0.33 -2.5 422,490 + HMPREF1078_RS05615 0.35 -1.7 422,491 - HMPREF1078_RS05615 0.35 -0.6 422,575 - HMPREF1078_RS05615 0.41 -2.7 422,575 - HMPREF1078_RS05615 0.41 -4.3 422,578 + HMPREF1078_RS05615 0.42 +0.9 422,578 + HMPREF1078_RS05615 0.42 -3.8 422,579 - HMPREF1078_RS05615 0.42 -3.4 422,579 - HMPREF1078_RS05615 0.42 +0.3 422,579 - HMPREF1078_RS05615 0.42 -2.6 422,579 - HMPREF1078_RS05615 0.42 -1.0 422,579 - HMPREF1078_RS05615 0.42 -0.3 422,579 - HMPREF1078_RS05615 0.42 -4.0 422,579 - HMPREF1078_RS05615 0.42 -2.2 422,711 + HMPREF1078_RS05615 0.51 -2.1 422,711 + HMPREF1078_RS05615 0.51 -2.7 422,716 - HMPREF1078_RS05615 0.51 -1.1 422,716 - HMPREF1078_RS05615 0.51 -3.0 422,720 - HMPREF1078_RS05615 0.52 -3.8 422,722 + HMPREF1078_RS05615 0.52 -2.5 422,736 + HMPREF1078_RS05615 0.53 -3.1 422,760 - HMPREF1078_RS05615 0.55 -2.3 422,760 - HMPREF1078_RS05615 0.55 -3.3 422,775 + HMPREF1078_RS05615 0.56 -3.8 422,775 + HMPREF1078_RS05615 0.56 -3.7 422,831 - HMPREF1078_RS05615 0.60 -1.1 422,867 + HMPREF1078_RS05615 0.62 -1.4 422,867 + HMPREF1078_RS05615 0.62 -4.6 422,917 - HMPREF1078_RS05615 0.66 +0.4 422,917 - HMPREF1078_RS05615 0.66 -3.0 423,028 - HMPREF1078_RS05615 0.74 -2.5 423,034 + HMPREF1078_RS05615 0.74 -4.6 423,035 - HMPREF1078_RS05615 0.74 -3.9 423,041 + HMPREF1078_RS05615 0.75 -3.0 423,042 - HMPREF1078_RS05615 0.75 -3.2 423,042 - HMPREF1078_RS05615 0.75 -0.7 423,080 - HMPREF1078_RS05615 0.77 -2.3 423,239 + HMPREF1078_RS05615 0.89 -1.6 423,245 - HMPREF1078_RS05615 0.89 -3.0 423,259 + -2.6 423,279 + -3.7 423,279 + -2.3 423,279 + -2.4 423,280 - -3.1 423,358 - -0.7 423,365 - -2.1 423,365 - -2.1 423,410 + -1.1 423,547 + -0.5 423,548 - -1.3 423,566 + -0.4 423,566 + +0.3 423,567 - +0.2 423,567 - -0.8 423,600 - -2.2 423,600 - -0.3 423,621 - +0.2 423,653 + +0.3 423,978 - HMPREF1078_RS05620 0.14 -0.1 424,008 - HMPREF1078_RS05620 0.15 +0.9 424,008 - HMPREF1078_RS05620 0.15 -0.7 424,086 - HMPREF1078_RS05620 0.17 +0.4 424,104 + HMPREF1078_RS05620 0.18 -2.8 424,105 - HMPREF1078_RS05620 0.18 -0.6 424,119 + HMPREF1078_RS05620 0.18 +0.6 424,119 + HMPREF1078_RS05620 0.18 -0.6 424,119 + HMPREF1078_RS05620 0.18 -0.1 424,363 + HMPREF1078_RS05620 0.25 -1.7 424,389 - HMPREF1078_RS05620 0.26 -2.3 424,389 - HMPREF1078_RS05620 0.26 -3.9
Or see this region's nucleotide sequence