Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04510 and HMPREF1078_RS04515 are separated by 23 nucleotides HMPREF1078_RS04515 and HMPREF1078_RS04520 are separated by 89 nucleotides
HMPREF1078_RS04510: HMPREF1078_RS04510 - Gfo/Idh/MocA family oxidoreductase, at 135,006 to 136,478
_RS04510
HMPREF1078_RS04515: HMPREF1078_RS04515 - DUF1080 domain-containing protein, at 136,502 to 137,356
_RS04515
HMPREF1078_RS04520: HMPREF1078_RS04520 - hypothetical protein, at 137,446 to 138,585
_RS04520
Position (kb) 136
137
138 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 135.572 kb on + strand, within HMPREF1078_RS04510 at 135.585 kb on - strand, within HMPREF1078_RS04510 at 135.585 kb on - strand, within HMPREF1078_RS04510 at 135.605 kb on + strand, within HMPREF1078_RS04510 at 135.606 kb on - strand, within HMPREF1078_RS04510 at 135.606 kb on - strand, within HMPREF1078_RS04510 at 135.636 kb on - strand, within HMPREF1078_RS04510 at 135.726 kb on + strand, within HMPREF1078_RS04510 at 135.726 kb on + strand, within HMPREF1078_RS04510 at 135.727 kb on - strand, within HMPREF1078_RS04510 at 135.780 kb on - strand, within HMPREF1078_RS04510 at 135.793 kb on + strand, within HMPREF1078_RS04510 at 135.794 kb on - strand, within HMPREF1078_RS04510 at 135.804 kb on - strand, within HMPREF1078_RS04510 at 135.824 kb on + strand, within HMPREF1078_RS04510 at 135.909 kb on - strand, within HMPREF1078_RS04510 at 135.919 kb on + strand, within HMPREF1078_RS04510 at 135.919 kb on + strand, within HMPREF1078_RS04510 at 135.920 kb on - strand, within HMPREF1078_RS04510 at 135.934 kb on - strand, within HMPREF1078_RS04510 at 135.944 kb on + strand, within HMPREF1078_RS04510 at 135.980 kb on + strand, within HMPREF1078_RS04510 at 136.035 kb on - strand, within HMPREF1078_RS04510 at 136.105 kb on + strand, within HMPREF1078_RS04510 at 136.265 kb on + strand, within HMPREF1078_RS04510 at 136.265 kb on + strand, within HMPREF1078_RS04510 at 136.266 kb on - strand, within HMPREF1078_RS04510 at 136.266 kb on - strand, within HMPREF1078_RS04510 at 136.334 kb on + strand at 136.334 kb on + strand at 136.413 kb on + strand at 136.436 kb on + strand at 136.436 kb on + strand at 136.436 kb on + strand at 136.437 kb on - strand at 136.437 kb on - strand at 136.437 kb on - strand at 136.440 kb on + strand at 136.440 kb on + strand at 136.440 kb on + strand at 136.477 kb on - strand at 136.480 kb on + strand at 136.480 kb on + strand at 136.481 kb on - strand at 136.494 kb on + strand at 136.495 kb on - strand at 136.498 kb on + strand at 136.516 kb on - strand at 136.518 kb on + strand at 136.519 kb on - strand at 136.521 kb on + strand at 136.537 kb on + strand at 136.547 kb on + strand at 136.548 kb on - strand at 136.562 kb on - strand at 136.571 kb on - strand at 136.634 kb on + strand, within HMPREF1078_RS04515 at 136.634 kb on + strand, within HMPREF1078_RS04515 at 136.634 kb on + strand, within HMPREF1078_RS04515 at 136.673 kb on - strand, within HMPREF1078_RS04515 at 136.779 kb on + strand, within HMPREF1078_RS04515 at 136.780 kb on - strand, within HMPREF1078_RS04515 at 136.795 kb on + strand, within HMPREF1078_RS04515 at 136.829 kb on - strand, within HMPREF1078_RS04515 at 136.897 kb on - strand, within HMPREF1078_RS04515 at 136.897 kb on - strand, within HMPREF1078_RS04515 at 136.897 kb on - strand, within HMPREF1078_RS04515 at 136.921 kb on - strand, within HMPREF1078_RS04515 at 136.925 kb on + strand, within HMPREF1078_RS04515 at 136.925 kb on + strand, within HMPREF1078_RS04515 at 136.925 kb on + strand, within HMPREF1078_RS04515 at 136.925 kb on + strand, within HMPREF1078_RS04515 at 136.925 kb on + strand, within HMPREF1078_RS04515 at 136.926 kb on - strand, within HMPREF1078_RS04515 at 136.926 kb on - strand, within HMPREF1078_RS04515 at 136.926 kb on - strand, within HMPREF1078_RS04515 at 136.926 kb on - strand, within HMPREF1078_RS04515 at 136.926 kb on - strand, within HMPREF1078_RS04515 at 136.926 kb on - strand, within HMPREF1078_RS04515 at 136.927 kb on + strand, within HMPREF1078_RS04515 at 136.928 kb on - strand, within HMPREF1078_RS04515 at 136.928 kb on - strand, within HMPREF1078_RS04515 at 136.958 kb on + strand, within HMPREF1078_RS04515 at 136.958 kb on + strand, within HMPREF1078_RS04515 at 136.958 kb on + strand, within HMPREF1078_RS04515 at 136.958 kb on + strand, within HMPREF1078_RS04515 at 136.958 kb on + strand, within HMPREF1078_RS04515 at 136.959 kb on - strand, within HMPREF1078_RS04515 at 137.051 kb on + strand, within HMPREF1078_RS04515 at 137.051 kb on + strand, within HMPREF1078_RS04515 at 137.068 kb on + strand, within HMPREF1078_RS04515 at 137.123 kb on + strand, within HMPREF1078_RS04515 at 137.124 kb on - strand, within HMPREF1078_RS04515 at 137.124 kb on - strand, within HMPREF1078_RS04515 at 137.124 kb on - strand, within HMPREF1078_RS04515 at 137.131 kb on + strand, within HMPREF1078_RS04515 at 137.131 kb on + strand, within HMPREF1078_RS04515 at 137.131 kb on + strand, within HMPREF1078_RS04515 at 137.171 kb on + strand, within HMPREF1078_RS04515 at 137.172 kb on - strand, within HMPREF1078_RS04515 at 137.330 kb on - strand at 137.339 kb on - strand at 137.339 kb on - strand at 137.354 kb on + strand at 137.355 kb on - strand at 137.404 kb on + strand at 137.464 kb on + strand at 137.464 kb on + strand at 137.465 kb on - strand at 137.465 kb on - strand at 137.472 kb on + strand at 137.472 kb on + strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.474 kb on + strand at 137.475 kb on - strand at 137.475 kb on - strand at 137.475 kb on - strand at 137.509 kb on - strand at 137.531 kb on + strand at 137.532 kb on - strand at 137.605 kb on - strand, within HMPREF1078_RS04520 at 137.637 kb on - strand, within HMPREF1078_RS04520 at 137.644 kb on - strand, within HMPREF1078_RS04520 at 137.684 kb on + strand, within HMPREF1078_RS04520 at 137.685 kb on - strand, within HMPREF1078_RS04520 at 137.685 kb on - strand, within HMPREF1078_RS04520 at 137.685 kb on - strand, within HMPREF1078_RS04520 at 137.685 kb on - strand, within HMPREF1078_RS04520 at 137.685 kb on - strand, within HMPREF1078_RS04520 at 137.765 kb on + strand, within HMPREF1078_RS04520 at 137.765 kb on + strand, within HMPREF1078_RS04520 at 137.766 kb on - strand, within HMPREF1078_RS04520 at 137.837 kb on + strand, within HMPREF1078_RS04520 at 137.837 kb on + strand, within HMPREF1078_RS04520 at 137.837 kb on + strand, within HMPREF1078_RS04520 at 137.837 kb on + strand, within HMPREF1078_RS04520 at 137.838 kb on - strand, within HMPREF1078_RS04520 at 137.838 kb on - strand, within HMPREF1078_RS04520 at 137.838 kb on - strand, within HMPREF1078_RS04520 at 137.873 kb on + strand, within HMPREF1078_RS04520 at 137.873 kb on + strand, within HMPREF1078_RS04520 at 137.924 kb on + strand, within HMPREF1078_RS04520 at 137.925 kb on - strand, within HMPREF1078_RS04520 at 137.978 kb on + strand, within HMPREF1078_RS04520 at 137.978 kb on + strand, within HMPREF1078_RS04520 at 138.016 kb on - strand, within HMPREF1078_RS04520 at 138.016 kb on - strand, within HMPREF1078_RS04520 at 138.021 kb on + strand, within HMPREF1078_RS04520 at 138.022 kb on - strand, within HMPREF1078_RS04520 at 138.029 kb on + strand, within HMPREF1078_RS04520 at 138.030 kb on - strand, within HMPREF1078_RS04520 at 138.064 kb on - strand, within HMPREF1078_RS04520 at 138.083 kb on + strand, within HMPREF1078_RS04520 at 138.111 kb on + strand, within HMPREF1078_RS04520 at 138.133 kb on - strand, within HMPREF1078_RS04520 at 138.141 kb on - strand, within HMPREF1078_RS04520 at 138.178 kb on - strand, within HMPREF1078_RS04520 at 138.178 kb on - strand, within HMPREF1078_RS04520 at 138.185 kb on + strand, within HMPREF1078_RS04520 at 138.185 kb on + strand, within HMPREF1078_RS04520 at 138.185 kb on + strand, within HMPREF1078_RS04520 at 138.186 kb on - strand, within HMPREF1078_RS04520 at 138.186 kb on - strand, within HMPREF1078_RS04520 at 138.186 kb on - strand, within HMPREF1078_RS04520 at 138.186 kb on - strand, within HMPREF1078_RS04520 at 138.189 kb on - strand, within HMPREF1078_RS04520 at 138.189 kb on - strand, within HMPREF1078_RS04520 at 138.189 kb on - strand, within HMPREF1078_RS04520 at 138.211 kb on - strand, within HMPREF1078_RS04520 at 138.262 kb on - strand, within HMPREF1078_RS04520 at 138.284 kb on - strand, within HMPREF1078_RS04520 at 138.284 kb on - strand, within HMPREF1078_RS04520 at 138.284 kb on - strand, within HMPREF1078_RS04520 at 138.284 kb on - strand, within HMPREF1078_RS04520 at 138.284 kb on - strand, within HMPREF1078_RS04520 at 138.304 kb on - strand, within HMPREF1078_RS04520
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 135,572 + HMPREF1078_RS04510 0.38 -0.5 135,585 - HMPREF1078_RS04510 0.39 -1.0 135,585 - HMPREF1078_RS04510 0.39 -2.5 135,605 + HMPREF1078_RS04510 0.41 -1.6 135,606 - HMPREF1078_RS04510 0.41 -0.1 135,606 - HMPREF1078_RS04510 0.41 -2.5 135,636 - HMPREF1078_RS04510 0.43 -0.1 135,726 + HMPREF1078_RS04510 0.49 -1.9 135,726 + HMPREF1078_RS04510 0.49 -1.1 135,727 - HMPREF1078_RS04510 0.49 -3.6 135,780 - HMPREF1078_RS04510 0.53 -2.6 135,793 + HMPREF1078_RS04510 0.53 -2.8 135,794 - HMPREF1078_RS04510 0.53 -2.1 135,804 - HMPREF1078_RS04510 0.54 -1.4 135,824 + HMPREF1078_RS04510 0.56 -0.1 135,909 - HMPREF1078_RS04510 0.61 -2.4 135,919 + HMPREF1078_RS04510 0.62 -0.9 135,919 + HMPREF1078_RS04510 0.62 -1.5 135,920 - HMPREF1078_RS04510 0.62 -0.6 135,934 - HMPREF1078_RS04510 0.63 -2.2 135,944 + HMPREF1078_RS04510 0.64 -2.6 135,980 + HMPREF1078_RS04510 0.66 -2.4 136,035 - HMPREF1078_RS04510 0.70 -2.1 136,105 + HMPREF1078_RS04510 0.75 -3.2 136,265 + HMPREF1078_RS04510 0.85 -2.4 136,265 + HMPREF1078_RS04510 0.85 -2.2 136,266 - HMPREF1078_RS04510 0.86 -1.4 136,266 - HMPREF1078_RS04510 0.86 -2.4 136,334 + -1.4 136,334 + -2.2 136,413 + -2.6 136,436 + -3.0 136,436 + -0.6 136,436 + +0.9 136,437 - -2.2 136,437 - -2.5 136,437 - +0.9 136,440 + -2.5 136,440 + -3.4 136,440 + -2.0 136,477 - -2.5 136,480 + -0.6 136,480 + -1.6 136,481 - -2.4 136,494 + -3.2 136,495 - -1.6 136,498 + -0.6 136,516 - -2.8 136,518 + -1.0 136,519 - -1.1 136,521 + -0.1 136,537 + -3.1 136,547 + -4.4 136,548 - -1.9 136,562 - -1.6 136,571 - -2.9 136,634 + HMPREF1078_RS04515 0.15 -1.3 136,634 + HMPREF1078_RS04515 0.15 -1.1 136,634 + HMPREF1078_RS04515 0.15 -3.4 136,673 - HMPREF1078_RS04515 0.20 +0.9 136,779 + HMPREF1078_RS04515 0.32 -2.4 136,780 - HMPREF1078_RS04515 0.33 -1.6 136,795 + HMPREF1078_RS04515 0.34 -0.7 136,829 - HMPREF1078_RS04515 0.38 -1.4 136,897 - HMPREF1078_RS04515 0.46 -1.6 136,897 - HMPREF1078_RS04515 0.46 -2.2 136,897 - HMPREF1078_RS04515 0.46 -1.4 136,921 - HMPREF1078_RS04515 0.49 -3.2 136,925 + HMPREF1078_RS04515 0.49 +2.5 136,925 + HMPREF1078_RS04515 0.49 -1.4 136,925 + HMPREF1078_RS04515 0.49 -2.3 136,925 + HMPREF1078_RS04515 0.49 -1.4 136,925 + HMPREF1078_RS04515 0.49 -0.1 136,926 - HMPREF1078_RS04515 0.50 -1.6 136,926 - HMPREF1078_RS04515 0.50 -1.1 136,926 - HMPREF1078_RS04515 0.50 -2.4 136,926 - HMPREF1078_RS04515 0.50 -1.9 136,926 - HMPREF1078_RS04515 0.50 -0.6 136,926 - HMPREF1078_RS04515 0.50 -0.1 136,927 + HMPREF1078_RS04515 0.50 -3.1 136,928 - HMPREF1078_RS04515 0.50 -2.9 136,928 - HMPREF1078_RS04515 0.50 -0.6 136,958 + HMPREF1078_RS04515 0.53 -2.6 136,958 + HMPREF1078_RS04515 0.53 -3.1 136,958 + HMPREF1078_RS04515 0.53 -2.8 136,958 + HMPREF1078_RS04515 0.53 +0.7 136,958 + HMPREF1078_RS04515 0.53 -1.4 136,959 - HMPREF1078_RS04515 0.53 -1.6 137,051 + HMPREF1078_RS04515 0.64 -0.6 137,051 + HMPREF1078_RS04515 0.64 -3.1 137,068 + HMPREF1078_RS04515 0.66 -1.6 137,123 + HMPREF1078_RS04515 0.73 -2.8 137,124 - HMPREF1078_RS04515 0.73 -0.4 137,124 - HMPREF1078_RS04515 0.73 -1.2 137,124 - HMPREF1078_RS04515 0.73 -0.6 137,131 + HMPREF1078_RS04515 0.74 -2.4 137,131 + HMPREF1078_RS04515 0.74 -1.4 137,131 + HMPREF1078_RS04515 0.74 -2.6 137,171 + HMPREF1078_RS04515 0.78 -1.4 137,172 - HMPREF1078_RS04515 0.78 -1.4 137,330 - -2.5 137,339 - -2.1 137,339 - -3.2 137,354 + -1.3 137,355 - -0.3 137,404 + -0.3 137,464 + -1.9 137,464 + -0.6 137,465 - -0.9 137,465 - -1.4 137,472 + -0.6 137,472 + -2.1 137,473 - -0.1 137,473 - +2.5 137,473 - -1.4 137,473 - +0.5 137,473 - -0.1 137,473 - -0.6 137,473 - -0.6 137,474 + -1.6 137,475 - -2.1 137,475 - -1.4 137,475 - -1.1 137,509 - -0.1 137,531 + -1.1 137,532 - -1.1 137,605 - HMPREF1078_RS04520 0.14 -2.2 137,637 - HMPREF1078_RS04520 0.17 -1.1 137,644 - HMPREF1078_RS04520 0.17 -0.6 137,684 + HMPREF1078_RS04520 0.21 -0.1 137,685 - HMPREF1078_RS04520 0.21 -1.4 137,685 - HMPREF1078_RS04520 0.21 -3.0 137,685 - HMPREF1078_RS04520 0.21 -0.6 137,685 - HMPREF1078_RS04520 0.21 -3.2 137,685 - HMPREF1078_RS04520 0.21 -1.1 137,765 + HMPREF1078_RS04520 0.28 -0.9 137,765 + HMPREF1078_RS04520 0.28 -1.8 137,766 - HMPREF1078_RS04520 0.28 -0.1 137,837 + HMPREF1078_RS04520 0.34 -2.8 137,837 + HMPREF1078_RS04520 0.34 -1.9 137,837 + HMPREF1078_RS04520 0.34 -2.5 137,837 + HMPREF1078_RS04520 0.34 -2.2 137,838 - HMPREF1078_RS04520 0.34 -2.7 137,838 - HMPREF1078_RS04520 0.34 -0.5 137,838 - HMPREF1078_RS04520 0.34 +0.1 137,873 + HMPREF1078_RS04520 0.37 -0.6 137,873 + HMPREF1078_RS04520 0.37 -1.1 137,924 + HMPREF1078_RS04520 0.42 -1.1 137,925 - HMPREF1078_RS04520 0.42 -1.6 137,978 + HMPREF1078_RS04520 0.47 +0.9 137,978 + HMPREF1078_RS04520 0.47 -1.1 138,016 - HMPREF1078_RS04520 0.50 -2.6 138,016 - HMPREF1078_RS04520 0.50 -0.6 138,021 + HMPREF1078_RS04520 0.50 -1.6 138,022 - HMPREF1078_RS04520 0.51 -2.5 138,029 + HMPREF1078_RS04520 0.51 -1.1 138,030 - HMPREF1078_RS04520 0.51 -0.6 138,064 - HMPREF1078_RS04520 0.54 -0.5 138,083 + HMPREF1078_RS04520 0.56 -1.4 138,111 + HMPREF1078_RS04520 0.58 -1.1 138,133 - HMPREF1078_RS04520 0.60 +0.9 138,141 - HMPREF1078_RS04520 0.61 -0.1 138,178 - HMPREF1078_RS04520 0.64 +1.5 138,178 - HMPREF1078_RS04520 0.64 -2.4 138,185 + HMPREF1078_RS04520 0.65 -0.1 138,185 + HMPREF1078_RS04520 0.65 -1.4 138,185 + HMPREF1078_RS04520 0.65 +0.9 138,186 - HMPREF1078_RS04520 0.65 -3.3 138,186 - HMPREF1078_RS04520 0.65 -1.1 138,186 - HMPREF1078_RS04520 0.65 -1.1 138,186 - HMPREF1078_RS04520 0.65 -0.6 138,189 - HMPREF1078_RS04520 0.65 -1.5 138,189 - HMPREF1078_RS04520 0.65 -2.2 138,189 - HMPREF1078_RS04520 0.65 -0.1 138,211 - HMPREF1078_RS04520 0.67 -1.6 138,262 - HMPREF1078_RS04520 0.72 -1.1 138,284 - HMPREF1078_RS04520 0.74 -1.4 138,284 - HMPREF1078_RS04520 0.74 +1.9 138,284 - HMPREF1078_RS04520 0.74 +0.9 138,284 - HMPREF1078_RS04520 0.74 -0.1 138,284 - HMPREF1078_RS04520 0.74 -1.6 138,304 - HMPREF1078_RS04520 0.75 +1.5
Or see this region's nucleotide sequence