Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04350 and HMPREF1078_RS04355 are separated by 126 nucleotides HMPREF1078_RS04355 and HMPREF1078_RS04360 are separated by 150 nucleotides HMPREF1078_RS04360 and HMPREF1078_RS04365 are separated by 1 nucleotides
HMPREF1078_RS04350: HMPREF1078_RS04350 - nitronate monooxygenase, at 101,818 to 102,906
_RS04350
HMPREF1078_RS04355: HMPREF1078_RS04355 - hypothetical protein, at 103,033 to 103,446
_RS04355
HMPREF1078_RS04360: HMPREF1078_RS04360 - sigma-70 family RNA polymerase sigma factor, at 103,597 to 104,154
_RS04360
HMPREF1078_RS04365: HMPREF1078_RS04365 - hypothetical protein, at 104,156 to 104,515
_RS04365
Position (kb) 103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 102.222 kb on + strand, within HMPREF1078_RS04350 at 102.222 kb on + strand, within HMPREF1078_RS04350 at 102.265 kb on + strand, within HMPREF1078_RS04350 at 102.265 kb on + strand, within HMPREF1078_RS04350 at 102.320 kb on + strand, within HMPREF1078_RS04350 at 102.417 kb on + strand, within HMPREF1078_RS04350 at 102.418 kb on - strand, within HMPREF1078_RS04350 at 102.455 kb on - strand, within HMPREF1078_RS04350 at 102.568 kb on + strand, within HMPREF1078_RS04350 at 102.718 kb on - strand, within HMPREF1078_RS04350 at 102.734 kb on - strand, within HMPREF1078_RS04350 at 102.754 kb on + strand, within HMPREF1078_RS04350 at 102.978 kb on + strand at 102.998 kb on + strand at 102.999 kb on - strand at 102.999 kb on - strand at 102.999 kb on - strand at 103.032 kb on - strand at 103.039 kb on - strand at 103.056 kb on + strand at 103.121 kb on + strand, within HMPREF1078_RS04355 at 103.121 kb on + strand, within HMPREF1078_RS04355 at 103.122 kb on - strand, within HMPREF1078_RS04355 at 103.143 kb on - strand, within HMPREF1078_RS04355 at 103.171 kb on - strand, within HMPREF1078_RS04355 at 103.174 kb on - strand, within HMPREF1078_RS04355 at 103.187 kb on - strand, within HMPREF1078_RS04355 at 103.205 kb on - strand, within HMPREF1078_RS04355 at 103.205 kb on - strand, within HMPREF1078_RS04355 at 103.211 kb on - strand, within HMPREF1078_RS04355 at 103.211 kb on - strand, within HMPREF1078_RS04355 at 103.217 kb on - strand, within HMPREF1078_RS04355 at 103.279 kb on - strand, within HMPREF1078_RS04355 at 103.279 kb on - strand, within HMPREF1078_RS04355 at 103.279 kb on - strand, within HMPREF1078_RS04355 at 103.279 kb on - strand, within HMPREF1078_RS04355 at 103.363 kb on - strand, within HMPREF1078_RS04355 at 103.391 kb on + strand, within HMPREF1078_RS04355 at 103.391 kb on + strand, within HMPREF1078_RS04355 at 103.391 kb on + strand, within HMPREF1078_RS04355 at 103.391 kb on + strand, within HMPREF1078_RS04355 at 103.392 kb on - strand, within HMPREF1078_RS04355 at 103.395 kb on + strand, within HMPREF1078_RS04355 at 103.395 kb on + strand, within HMPREF1078_RS04355 at 103.395 kb on + strand, within HMPREF1078_RS04355 at 103.396 kb on - strand, within HMPREF1078_RS04355 at 103.400 kb on - strand, within HMPREF1078_RS04355 at 103.446 kb on + strand at 103.446 kb on + strand at 103.447 kb on - strand at 103.452 kb on + strand at 103.452 kb on + strand at 103.452 kb on + strand at 103.460 kb on + strand at 103.484 kb on + strand at 103.484 kb on + strand at 103.484 kb on + strand at 103.484 kb on + strand at 103.533 kb on + strand at 103.561 kb on + strand at 103.567 kb on - strand at 103.588 kb on + strand at 103.589 kb on - strand at 103.590 kb on + strand at 103.590 kb on + strand at 103.590 kb on + strand at 103.593 kb on + strand at 103.606 kb on + strand at 103.622 kb on - strand at 103.622 kb on - strand at 103.622 kb on - strand at 103.623 kb on + strand at 103.624 kb on - strand at 103.625 kb on + strand at 103.625 kb on + strand at 103.626 kb on - strand at 103.635 kb on - strand at 103.635 kb on - strand at 103.648 kb on - strand at 103.678 kb on + strand, within HMPREF1078_RS04360 at 103.678 kb on + strand, within HMPREF1078_RS04360 at 103.692 kb on + strand, within HMPREF1078_RS04360 at 103.758 kb on + strand, within HMPREF1078_RS04360 at 103.836 kb on + strand, within HMPREF1078_RS04360 at 103.836 kb on + strand, within HMPREF1078_RS04360 at 103.900 kb on - strand, within HMPREF1078_RS04360 at 103.903 kb on - strand, within HMPREF1078_RS04360 at 103.903 kb on - strand, within HMPREF1078_RS04360 at 103.907 kb on + strand, within HMPREF1078_RS04360 at 104.027 kb on - strand, within HMPREF1078_RS04360 at 104.028 kb on + strand, within HMPREF1078_RS04360 at 104.082 kb on + strand, within HMPREF1078_RS04360 at 104.109 kb on - strand at 104.133 kb on - strand at 104.326 kb on + strand, within HMPREF1078_RS04365 at 104.357 kb on + strand, within HMPREF1078_RS04365 at 104.357 kb on + strand, within HMPREF1078_RS04365 at 104.358 kb on - strand, within HMPREF1078_RS04365 at 104.414 kb on + strand, within HMPREF1078_RS04365 at 104.414 kb on + strand, within HMPREF1078_RS04365 at 104.415 kb on - strand, within HMPREF1078_RS04365 at 104.415 kb on - strand, within HMPREF1078_RS04365 at 104.415 kb on - strand, within HMPREF1078_RS04365 at 104.415 kb on - strand, within HMPREF1078_RS04365
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 102,222 + HMPREF1078_RS04350 0.37 +0.4 102,222 + HMPREF1078_RS04350 0.37 -2.8 102,265 + HMPREF1078_RS04350 0.41 -1.4 102,265 + HMPREF1078_RS04350 0.41 -2.4 102,320 + HMPREF1078_RS04350 0.46 -0.8 102,417 + HMPREF1078_RS04350 0.55 +0.9 102,418 - HMPREF1078_RS04350 0.55 +0.1 102,455 - HMPREF1078_RS04350 0.58 -0.6 102,568 + HMPREF1078_RS04350 0.69 +0.1 102,718 - HMPREF1078_RS04350 0.83 +0.2 102,734 - HMPREF1078_RS04350 0.84 -1.1 102,754 + HMPREF1078_RS04350 0.86 -0.7 102,978 + -1.9 102,998 + -0.2 102,999 - +1.7 102,999 - -0.6 102,999 - +0.0 103,032 - -0.1 103,039 - +1.0 103,056 + -0.1 103,121 + HMPREF1078_RS04355 0.21 -1.1 103,121 + HMPREF1078_RS04355 0.21 -1.1 103,122 - HMPREF1078_RS04355 0.21 -0.1 103,143 - HMPREF1078_RS04355 0.27 -1.4 103,171 - HMPREF1078_RS04355 0.33 -2.1 103,174 - HMPREF1078_RS04355 0.34 -3.3 103,187 - HMPREF1078_RS04355 0.37 -2.6 103,205 - HMPREF1078_RS04355 0.42 -1.6 103,205 - HMPREF1078_RS04355 0.42 -2.8 103,211 - HMPREF1078_RS04355 0.43 -2.1 103,211 - HMPREF1078_RS04355 0.43 -1.1 103,217 - HMPREF1078_RS04355 0.44 -2.1 103,279 - HMPREF1078_RS04355 0.59 -2.5 103,279 - HMPREF1078_RS04355 0.59 +0.9 103,279 - HMPREF1078_RS04355 0.59 -1.6 103,279 - HMPREF1078_RS04355 0.59 -2.9 103,363 - HMPREF1078_RS04355 0.80 -2.6 103,391 + HMPREF1078_RS04355 0.86 +0.9 103,391 + HMPREF1078_RS04355 0.86 -0.6 103,391 + HMPREF1078_RS04355 0.86 -0.6 103,391 + HMPREF1078_RS04355 0.86 -0.1 103,392 - HMPREF1078_RS04355 0.87 -1.9 103,395 + HMPREF1078_RS04355 0.87 -0.1 103,395 + HMPREF1078_RS04355 0.87 -2.2 103,395 + HMPREF1078_RS04355 0.87 -1.6 103,396 - HMPREF1078_RS04355 0.88 -1.4 103,400 - HMPREF1078_RS04355 0.89 -1.6 103,446 + -0.6 103,446 + -1.4 103,447 - -0.1 103,452 + -0.1 103,452 + -0.1 103,452 + -0.6 103,460 + +0.9 103,484 + -2.0 103,484 + -1.6 103,484 + -2.1 103,484 + -1.1 103,533 + +0.9 103,561 + +1.2 103,567 - -0.9 103,588 + +0.4 103,589 - +1.4 103,590 + -2.1 103,590 + -1.1 103,590 + -0.2 103,593 + -1.6 103,606 + -0.1 103,622 - +0.9 103,622 - -1.0 103,622 - +0.9 103,623 + -2.2 103,624 - +0.0 103,625 + -1.0 103,625 + -0.2 103,626 - +1.2 103,635 - -1.1 103,635 - +3.3 103,648 - -2.1 103,678 + HMPREF1078_RS04360 0.15 -1.5 103,678 + HMPREF1078_RS04360 0.15 -2.0 103,692 + HMPREF1078_RS04360 0.17 -1.1 103,758 + HMPREF1078_RS04360 0.29 +0.2 103,836 + HMPREF1078_RS04360 0.43 +0.9 103,836 + HMPREF1078_RS04360 0.43 -0.3 103,900 - HMPREF1078_RS04360 0.54 +0.0 103,903 - HMPREF1078_RS04360 0.55 -1.4 103,903 - HMPREF1078_RS04360 0.55 -1.6 103,907 + HMPREF1078_RS04360 0.56 -1.2 104,027 - HMPREF1078_RS04360 0.77 +1.1 104,028 + HMPREF1078_RS04360 0.77 -1.5 104,082 + HMPREF1078_RS04360 0.87 +1.9 104,109 - +0.2 104,133 - +1.2 104,326 + HMPREF1078_RS04365 0.47 -2.9 104,357 + HMPREF1078_RS04365 0.56 -2.2 104,357 + HMPREF1078_RS04365 0.56 -0.9 104,358 - HMPREF1078_RS04365 0.56 -0.1 104,414 + HMPREF1078_RS04365 0.72 -3.0 104,414 + HMPREF1078_RS04365 0.72 -2.0 104,415 - HMPREF1078_RS04365 0.72 -0.4 104,415 - HMPREF1078_RS04365 0.72 -2.6 104,415 - HMPREF1078_RS04365 0.72 +0.9 104,415 - HMPREF1078_RS04365 0.72 -3.4
Or see this region's nucleotide sequence