Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02385 and HMPREF1078_RS02390 are separated by 184 nucleotides HMPREF1078_RS02390 and HMPREF1078_RS02395 are separated by 41 nucleotides
HMPREF1078_RS02385: HMPREF1078_RS02385 - recombinase family protein, at 582,976 to 583,605
_RS02385
HMPREF1078_RS02390: HMPREF1078_RS02390 - tetratricopeptide repeat protein, at 583,790 to 585,016
_RS02390
HMPREF1078_RS02395: HMPREF1078_RS02395 - DNA gyrase subunit A, at 585,058 to 587,667
_RS02395
Position (kb) 583
584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 582.825 kb on - strand at 582.841 kb on + strand at 582.845 kb on + strand at 582.846 kb on - strand at 582.877 kb on - strand at 582.877 kb on - strand at 582.885 kb on + strand at 582.885 kb on + strand at 582.885 kb on + strand at 582.885 kb on + strand at 582.885 kb on + strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.886 kb on - strand at 582.887 kb on + strand at 582.935 kb on + strand at 582.937 kb on + strand at 582.938 kb on - strand at 582.939 kb on + strand at 582.939 kb on + strand at 582.989 kb on - strand at 582.992 kb on + strand at 582.993 kb on - strand at 582.993 kb on - strand at 582.997 kb on - strand at 582.997 kb on - strand at 582.997 kb on - strand at 582.997 kb on - strand at 583.134 kb on - strand, within HMPREF1078_RS02385 at 583.159 kb on - strand, within HMPREF1078_RS02385 at 583.159 kb on - strand, within HMPREF1078_RS02385 at 583.209 kb on - strand, within HMPREF1078_RS02385 at 583.209 kb on - strand, within HMPREF1078_RS02385 at 583.231 kb on - strand, within HMPREF1078_RS02385 at 583.231 kb on - strand, within HMPREF1078_RS02385 at 583.253 kb on - strand, within HMPREF1078_RS02385 at 583.253 kb on - strand, within HMPREF1078_RS02385 at 583.258 kb on - strand, within HMPREF1078_RS02385 at 583.258 kb on - strand, within HMPREF1078_RS02385 at 583.312 kb on - strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.492 kb on + strand, within HMPREF1078_RS02385 at 583.493 kb on - strand, within HMPREF1078_RS02385 at 583.493 kb on - strand, within HMPREF1078_RS02385 at 583.493 kb on - strand, within HMPREF1078_RS02385 at 583.510 kb on + strand, within HMPREF1078_RS02385 at 583.513 kb on + strand, within HMPREF1078_RS02385 at 583.513 kb on + strand, within HMPREF1078_RS02385 at 583.515 kb on + strand, within HMPREF1078_RS02385 at 583.557 kb on + strand at 583.557 kb on + strand at 583.558 kb on - strand at 583.559 kb on + strand at 583.564 kb on - strand at 583.568 kb on + strand at 583.603 kb on + strand at 583.604 kb on - strand at 583.635 kb on + strand at 583.635 kb on + strand at 583.667 kb on + strand at 583.667 kb on + strand at 583.668 kb on - strand at 583.670 kb on + strand at 583.671 kb on - strand at 583.703 kb on - strand at 583.705 kb on + strand at 583.705 kb on + strand at 583.706 kb on - strand at 583.746 kb on + strand at 583.746 kb on + strand at 583.746 kb on + strand at 583.746 kb on + strand at 583.746 kb on + strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.747 kb on - strand at 583.748 kb on + strand at 583.748 kb on + strand at 583.749 kb on - strand at 583.749 kb on - strand at 583.749 kb on - strand at 583.755 kb on + strand at 583.755 kb on + strand at 583.766 kb on - strand at 583.780 kb on - strand at 583.788 kb on + strand at 583.788 kb on + strand at 583.789 kb on - strand at 583.791 kb on + strand at 583.796 kb on - strand at 583.814 kb on - strand at 583.845 kb on + strand at 583.848 kb on + strand at 583.848 kb on + strand at 583.849 kb on - strand at 583.849 kb on - strand at 583.853 kb on - strand at 583.853 kb on - strand at 583.909 kb on + strand at 583.910 kb on - strand at 583.911 kb on + strand at 583.912 kb on - strand at 583.914 kb on + strand, within HMPREF1078_RS02390 at 583.914 kb on + strand, within HMPREF1078_RS02390 at 583.914 kb on + strand, within HMPREF1078_RS02390 at 583.915 kb on - strand, within HMPREF1078_RS02390 at 583.966 kb on - strand, within HMPREF1078_RS02390 at 583.972 kb on + strand, within HMPREF1078_RS02390 at 583.975 kb on + strand, within HMPREF1078_RS02390 at 583.976 kb on - strand, within HMPREF1078_RS02390 at 583.988 kb on - strand, within HMPREF1078_RS02390 at 584.022 kb on + strand, within HMPREF1078_RS02390 at 584.025 kb on + strand, within HMPREF1078_RS02390 at 584.025 kb on + strand, within HMPREF1078_RS02390 at 584.029 kb on + strand, within HMPREF1078_RS02390 at 584.042 kb on - strand, within HMPREF1078_RS02390 at 584.042 kb on - strand, within HMPREF1078_RS02390 at 584.076 kb on - strand, within HMPREF1078_RS02390 at 584.110 kb on - strand, within HMPREF1078_RS02390 at 584.144 kb on + strand, within HMPREF1078_RS02390 at 584.145 kb on - strand, within HMPREF1078_RS02390 at 584.151 kb on + strand, within HMPREF1078_RS02390 at 584.152 kb on - strand, within HMPREF1078_RS02390 at 584.152 kb on - strand, within HMPREF1078_RS02390 at 584.218 kb on + strand, within HMPREF1078_RS02390 at 584.226 kb on + strand, within HMPREF1078_RS02390 at 584.226 kb on + strand, within HMPREF1078_RS02390 at 584.227 kb on - strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.232 kb on + strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.233 kb on - strand, within HMPREF1078_RS02390 at 584.236 kb on + strand, within HMPREF1078_RS02390 at 584.236 kb on + strand, within HMPREF1078_RS02390 at 584.236 kb on + strand, within HMPREF1078_RS02390 at 584.237 kb on - strand, within HMPREF1078_RS02390 at 584.248 kb on + strand, within HMPREF1078_RS02390 at 584.311 kb on + strand, within HMPREF1078_RS02390 at 584.312 kb on - strand, within HMPREF1078_RS02390 at 584.349 kb on + strand, within HMPREF1078_RS02390 at 584.359 kb on - strand, within HMPREF1078_RS02390 at 584.365 kb on - strand, within HMPREF1078_RS02390 at 584.373 kb on + strand, within HMPREF1078_RS02390 at 584.374 kb on - strand, within HMPREF1078_RS02390 at 584.374 kb on - strand, within HMPREF1078_RS02390 at 584.435 kb on - strand, within HMPREF1078_RS02390 at 584.439 kb on - strand, within HMPREF1078_RS02390 at 584.461 kb on - strand, within HMPREF1078_RS02390 at 584.482 kb on + strand, within HMPREF1078_RS02390 at 584.538 kb on - strand, within HMPREF1078_RS02390 at 584.541 kb on + strand, within HMPREF1078_RS02390 at 584.569 kb on + strand, within HMPREF1078_RS02390 at 584.570 kb on - strand, within HMPREF1078_RS02390 at 584.571 kb on + strand, within HMPREF1078_RS02390 at 584.572 kb on - strand, within HMPREF1078_RS02390 at 584.589 kb on + strand, within HMPREF1078_RS02390 at 584.590 kb on - strand, within HMPREF1078_RS02390 at 584.592 kb on + strand, within HMPREF1078_RS02390 at 584.613 kb on + strand, within HMPREF1078_RS02390 at 584.614 kb on - strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.615 kb on + strand, within HMPREF1078_RS02390 at 584.616 kb on + strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.616 kb on - strand, within HMPREF1078_RS02390 at 584.635 kb on + strand, within HMPREF1078_RS02390 at 584.645 kb on - strand, within HMPREF1078_RS02390 at 584.645 kb on - strand, within HMPREF1078_RS02390 at 584.660 kb on - strand, within HMPREF1078_RS02390 at 584.703 kb on + strand, within HMPREF1078_RS02390 at 584.704 kb on - strand, within HMPREF1078_RS02390 at 584.724 kb on - strand, within HMPREF1078_RS02390 at 584.728 kb on + strand, within HMPREF1078_RS02390 at 584.729 kb on - strand, within HMPREF1078_RS02390 at 584.729 kb on - strand, within HMPREF1078_RS02390 at 584.733 kb on + strand, within HMPREF1078_RS02390 at 584.734 kb on - strand, within HMPREF1078_RS02390 at 584.744 kb on + strand, within HMPREF1078_RS02390 at 584.749 kb on + strand, within HMPREF1078_RS02390 at 584.750 kb on - strand, within HMPREF1078_RS02390 at 584.786 kb on - strand, within HMPREF1078_RS02390 at 584.832 kb on + strand, within HMPREF1078_RS02390 at 584.915 kb on - strand at 584.929 kb on + strand at 584.987 kb on + strand at 584.987 kb on + strand at 584.988 kb on - strand at 584.988 kb on - strand at 585.002 kb on + strand at 585.037 kb on + strand at 585.037 kb on + strand at 585.037 kb on + strand at 585.038 kb on - strand at 585.038 kb on - strand at 585.040 kb on + strand at 585.059 kb on + strand at 585.172 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 582,825 - +0.6 582,841 + +1.1 582,845 + +3.0 582,846 - -0.6 582,877 - -1.5 582,877 - +1.4 582,885 + -1.1 582,885 + -1.2 582,885 + -0.4 582,885 + +1.5 582,885 + -0.4 582,886 - +1.5 582,886 - +2.3 582,886 - +1.1 582,886 - +3.5 582,886 - -2.6 582,886 - +0.2 582,887 + -1.4 582,935 + +0.1 582,937 + +1.8 582,938 - -0.0 582,939 + +0.7 582,939 + -0.0 582,989 - -1.0 582,992 + -2.5 582,993 - -1.4 582,993 - -0.6 582,997 - -0.6 582,997 - +3.0 582,997 - +0.4 582,997 - +0.4 583,134 - HMPREF1078_RS02385 0.25 -1.6 583,159 - HMPREF1078_RS02385 0.29 -0.6 583,159 - HMPREF1078_RS02385 0.29 +0.5 583,209 - HMPREF1078_RS02385 0.37 -0.6 583,209 - HMPREF1078_RS02385 0.37 +1.0 583,231 - HMPREF1078_RS02385 0.40 -0.6 583,231 - HMPREF1078_RS02385 0.40 +2.0 583,253 - HMPREF1078_RS02385 0.44 +1.0 583,253 - HMPREF1078_RS02385 0.44 +1.0 583,258 - HMPREF1078_RS02385 0.45 +1.4 583,258 - HMPREF1078_RS02385 0.45 +1.0 583,312 - HMPREF1078_RS02385 0.53 -0.0 583,492 + HMPREF1078_RS02385 0.82 -0.3 583,492 + HMPREF1078_RS02385 0.82 +0.1 583,492 + HMPREF1078_RS02385 0.82 +1.0 583,492 + HMPREF1078_RS02385 0.82 -1.4 583,492 + HMPREF1078_RS02385 0.82 -0.8 583,492 + HMPREF1078_RS02385 0.82 +0.3 583,493 - HMPREF1078_RS02385 0.82 -2.5 583,493 - HMPREF1078_RS02385 0.82 -2.0 583,493 - HMPREF1078_RS02385 0.82 +1.3 583,510 + HMPREF1078_RS02385 0.85 +0.6 583,513 + HMPREF1078_RS02385 0.85 -1.7 583,513 + HMPREF1078_RS02385 0.85 +0.2 583,515 + HMPREF1078_RS02385 0.86 +0.8 583,557 + +1.0 583,557 + +1.6 583,558 - -0.0 583,559 + -0.2 583,564 - +0.7 583,568 + +0.5 583,603 + +1.2 583,604 - -1.4 583,635 + -0.9 583,635 + +0.1 583,667 + -2.4 583,667 + -0.4 583,668 - +1.1 583,670 + +0.3 583,671 - -0.5 583,703 - +0.1 583,705 + +1.0 583,705 + -0.1 583,706 - +0.1 583,746 + -0.0 583,746 + +1.0 583,746 + -0.5 583,746 + -1.9 583,746 + -2.9 583,747 - -2.4 583,747 - -0.7 583,747 - -2.2 583,747 - -1.4 583,747 - +1.0 583,747 - +2.0 583,748 + -2.6 583,748 + -1.8 583,749 - -0.1 583,749 - -1.6 583,749 - -1.5 583,755 + -2.0 583,755 + -2.9 583,766 - -2.2 583,780 - -1.0 583,788 + -1.6 583,788 + -1.6 583,789 - -0.4 583,791 + -2.0 583,796 - -2.6 583,814 - -2.0 583,845 + -1.0 583,848 + -1.4 583,848 + -1.4 583,849 - -1.6 583,849 - -1.8 583,853 - -0.6 583,853 - -1.0 583,909 + -3.3 583,910 - -1.0 583,911 + -1.4 583,912 - -0.6 583,914 + HMPREF1078_RS02390 0.10 -0.0 583,914 + HMPREF1078_RS02390 0.10 -2.0 583,914 + HMPREF1078_RS02390 0.10 -0.0 583,915 - HMPREF1078_RS02390 0.10 -0.0 583,966 - HMPREF1078_RS02390 0.14 -0.0 583,972 + HMPREF1078_RS02390 0.15 -1.5 583,975 + HMPREF1078_RS02390 0.15 +1.0 583,976 - HMPREF1078_RS02390 0.15 -1.0 583,988 - HMPREF1078_RS02390 0.16 -1.0 584,022 + HMPREF1078_RS02390 0.19 -0.6 584,025 + HMPREF1078_RS02390 0.19 -1.0 584,025 + HMPREF1078_RS02390 0.19 -3.1 584,029 + HMPREF1078_RS02390 0.19 -1.0 584,042 - HMPREF1078_RS02390 0.21 -1.0 584,042 - HMPREF1078_RS02390 0.21 -0.0 584,076 - HMPREF1078_RS02390 0.23 -3.0 584,110 - HMPREF1078_RS02390 0.26 -1.4 584,144 + HMPREF1078_RS02390 0.29 -1.0 584,145 - HMPREF1078_RS02390 0.29 +1.0 584,151 + HMPREF1078_RS02390 0.29 -2.0 584,152 - HMPREF1078_RS02390 0.30 -1.4 584,152 - HMPREF1078_RS02390 0.30 -2.5 584,218 + HMPREF1078_RS02390 0.35 -1.4 584,226 + HMPREF1078_RS02390 0.36 -1.6 584,226 + HMPREF1078_RS02390 0.36 -2.6 584,227 - HMPREF1078_RS02390 0.36 -2.8 584,232 + HMPREF1078_RS02390 0.36 -0.6 584,232 + HMPREF1078_RS02390 0.36 -1.8 584,232 + HMPREF1078_RS02390 0.36 -0.6 584,232 + HMPREF1078_RS02390 0.36 -1.8 584,232 + HMPREF1078_RS02390 0.36 -0.0 584,232 + HMPREF1078_RS02390 0.36 -2.9 584,232 + HMPREF1078_RS02390 0.36 -0.0 584,232 + HMPREF1078_RS02390 0.36 -1.4 584,232 + HMPREF1078_RS02390 0.36 -2.2 584,233 - HMPREF1078_RS02390 0.36 -2.0 584,233 - HMPREF1078_RS02390 0.36 -2.6 584,233 - HMPREF1078_RS02390 0.36 -1.6 584,233 - HMPREF1078_RS02390 0.36 -2.5 584,233 - HMPREF1078_RS02390 0.36 -2.6 584,233 - HMPREF1078_RS02390 0.36 -2.0 584,233 - HMPREF1078_RS02390 0.36 -1.4 584,233 - HMPREF1078_RS02390 0.36 +0.5 584,233 - HMPREF1078_RS02390 0.36 -1.6 584,233 - HMPREF1078_RS02390 0.36 -0.6 584,233 - HMPREF1078_RS02390 0.36 +1.0 584,233 - HMPREF1078_RS02390 0.36 -1.8 584,233 - HMPREF1078_RS02390 0.36 -0.6 584,233 - HMPREF1078_RS02390 0.36 -1.4 584,233 - HMPREF1078_RS02390 0.36 +1.0 584,236 + HMPREF1078_RS02390 0.36 +1.0 584,236 + HMPREF1078_RS02390 0.36 -2.6 584,236 + HMPREF1078_RS02390 0.36 -1.5 584,237 - HMPREF1078_RS02390 0.36 -1.0 584,248 + HMPREF1078_RS02390 0.37 -0.6 584,311 + HMPREF1078_RS02390 0.42 +1.0 584,312 - HMPREF1078_RS02390 0.43 -1.4 584,349 + HMPREF1078_RS02390 0.46 -1.6 584,359 - HMPREF1078_RS02390 0.46 -1.0 584,365 - HMPREF1078_RS02390 0.47 -3.4 584,373 + HMPREF1078_RS02390 0.48 +1.0 584,374 - HMPREF1078_RS02390 0.48 -2.4 584,374 - HMPREF1078_RS02390 0.48 -1.4 584,435 - HMPREF1078_RS02390 0.53 -1.6 584,439 - HMPREF1078_RS02390 0.53 -1.4 584,461 - HMPREF1078_RS02390 0.55 -2.8 584,482 + HMPREF1078_RS02390 0.56 +1.0 584,538 - HMPREF1078_RS02390 0.61 -1.6 584,541 + HMPREF1078_RS02390 0.61 -1.0 584,569 + HMPREF1078_RS02390 0.63 -0.0 584,570 - HMPREF1078_RS02390 0.64 -0.6 584,571 + HMPREF1078_RS02390 0.64 +1.0 584,572 - HMPREF1078_RS02390 0.64 -1.6 584,589 + HMPREF1078_RS02390 0.65 -3.0 584,590 - HMPREF1078_RS02390 0.65 -1.6 584,592 + HMPREF1078_RS02390 0.65 -2.4 584,613 + HMPREF1078_RS02390 0.67 -2.2 584,614 - HMPREF1078_RS02390 0.67 +1.0 584,615 + HMPREF1078_RS02390 0.67 -1.2 584,615 + HMPREF1078_RS02390 0.67 -0.6 584,615 + HMPREF1078_RS02390 0.67 -0.6 584,615 + HMPREF1078_RS02390 0.67 -0.0 584,615 + HMPREF1078_RS02390 0.67 -2.4 584,615 + HMPREF1078_RS02390 0.67 +1.0 584,616 + HMPREF1078_RS02390 0.67 -0.6 584,616 - HMPREF1078_RS02390 0.67 -0.6 584,616 - HMPREF1078_RS02390 0.67 -0.0 584,616 - HMPREF1078_RS02390 0.67 -0.6 584,616 - HMPREF1078_RS02390 0.67 -1.0 584,616 - HMPREF1078_RS02390 0.67 -2.4 584,616 - HMPREF1078_RS02390 0.67 -1.4 584,616 - HMPREF1078_RS02390 0.67 -0.0 584,635 + HMPREF1078_RS02390 0.69 -1.5 584,645 - HMPREF1078_RS02390 0.70 -2.2 584,645 - HMPREF1078_RS02390 0.70 -2.2 584,660 - HMPREF1078_RS02390 0.71 -1.8 584,703 + HMPREF1078_RS02390 0.74 -0.0 584,704 - HMPREF1078_RS02390 0.74 +1.0 584,724 - HMPREF1078_RS02390 0.76 -1.6 584,728 + HMPREF1078_RS02390 0.76 -1.5 584,729 - HMPREF1078_RS02390 0.77 -1.0 584,729 - HMPREF1078_RS02390 0.77 -3.3 584,733 + HMPREF1078_RS02390 0.77 -1.6 584,734 - HMPREF1078_RS02390 0.77 -1.0 584,744 + HMPREF1078_RS02390 0.78 -1.6 584,749 + HMPREF1078_RS02390 0.78 -0.6 584,750 - HMPREF1078_RS02390 0.78 -3.1 584,786 - HMPREF1078_RS02390 0.81 -1.8 584,832 + HMPREF1078_RS02390 0.85 -2.6 584,915 - -0.0 584,929 + -0.0 584,987 + -0.0 584,987 + -1.0 584,988 - -1.0 584,988 - -1.8 585,002 + +1.0 585,037 + -2.4 585,037 + -2.5 585,037 + -1.4 585,038 - -2.0 585,038 - -1.6 585,040 + -1.0 585,059 + -1.2 585,172 + -1.0
Or see this region's nucleotide sequence