Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01850 and HMPREF1078_RS01855 are separated by 15 nucleotides HMPREF1078_RS01855 and HMPREF1078_RS01860 are separated by 49 nucleotides HMPREF1078_RS01860 and HMPREF1078_RS01865 are separated by 4 nucleotides HMPREF1078_RS01865 and HMPREF1078_RS01870 are separated by 75 nucleotides
HMPREF1078_RS01850: HMPREF1078_RS01850 - VWA domain-containing protein, at 460,471 to 461,490
_RS01850
HMPREF1078_RS01855: HMPREF1078_RS01855 - tetratricopeptide repeat protein, at 461,506 to 462,258
_RS01855
HMPREF1078_RS01860: HMPREF1078_RS01860 - BatD family protein, at 462,308 to 464,122
_RS01860
HMPREF1078_RS01865: HMPREF1078_RS01865 - tetratricopeptide repeat protein, at 464,127 to 464,894
_RS01865
HMPREF1078_RS01870: HMPREF1078_RS01870 - phosphatase PAP2 family protein, at 464,970 to 465,662
_RS01870
Position (kb) 462
463
464
465 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 461.502 kb on + strand at 461.502 kb on + strand at 461.502 kb on + strand at 461.700 kb on + strand, within HMPREF1078_RS01855 at 461.805 kb on + strand, within HMPREF1078_RS01855 at 461.832 kb on + strand, within HMPREF1078_RS01855 at 461.866 kb on + strand, within HMPREF1078_RS01855 at 462.462 kb on + strand at 462.520 kb on + strand, within HMPREF1078_RS01860 at 462.578 kb on + strand, within HMPREF1078_RS01860 at 462.650 kb on + strand, within HMPREF1078_RS01860 at 463.104 kb on + strand, within HMPREF1078_RS01860 at 463.137 kb on + strand, within HMPREF1078_RS01860 at 463.685 kb on + strand, within HMPREF1078_RS01860 at 463.964 kb on + strand at 464.062 kb on + strand at 464.062 kb on + strand at 464.067 kb on + strand at 464.067 kb on + strand at 464.069 kb on + strand at 464.069 kb on + strand at 464.095 kb on + strand at 464.138 kb on + strand at 464.140 kb on + strand at 464.140 kb on + strand at 464.144 kb on + strand at 464.158 kb on + strand at 464.183 kb on + strand at 464.313 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.316 kb on + strand, within HMPREF1078_RS01865 at 464.340 kb on - strand, within HMPREF1078_RS01865 at 464.625 kb on + strand, within HMPREF1078_RS01865 at 464.638 kb on + strand, within HMPREF1078_RS01865 at 464.638 kb on + strand, within HMPREF1078_RS01865 at 464.666 kb on + strand, within HMPREF1078_RS01865 at 464.666 kb on + strand, within HMPREF1078_RS01865 at 464.667 kb on - strand, within HMPREF1078_RS01865 at 464.858 kb on - strand at 464.893 kb on - strand at 464.906 kb on + strand at 464.914 kb on - strand at 464.921 kb on - strand at 464.934 kb on - strand at 464.986 kb on + strand at 464.986 kb on + strand at 464.987 kb on - strand at 465.117 kb on + strand, within HMPREF1078_RS01870
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 461,502 + -0.7 461,502 + -0.3 461,502 + -1.7 461,700 + HMPREF1078_RS01855 0.26 -1.4 461,805 + HMPREF1078_RS01855 0.40 +1.0 461,832 + HMPREF1078_RS01855 0.43 -0.6 461,866 + HMPREF1078_RS01855 0.48 -1.4 462,462 + -1.6 462,520 + HMPREF1078_RS01860 0.12 -1.0 462,578 + HMPREF1078_RS01860 0.15 -1.0 462,650 + HMPREF1078_RS01860 0.19 +1.0 463,104 + HMPREF1078_RS01860 0.44 +1.0 463,137 + HMPREF1078_RS01860 0.46 -0.6 463,685 + HMPREF1078_RS01860 0.76 -1.0 463,964 + -1.6 464,062 + +1.5 464,062 + +1.2 464,067 + -0.6 464,067 + -3.0 464,069 + -0.5 464,069 + -0.6 464,095 + +0.4 464,138 + +0.8 464,140 + -1.0 464,140 + -1.0 464,144 + +1.0 464,158 + +0.5 464,183 + +1.0 464,313 + HMPREF1078_RS01865 0.24 -1.4 464,316 + HMPREF1078_RS01865 0.25 +3.0 464,316 + HMPREF1078_RS01865 0.25 +0.2 464,316 + HMPREF1078_RS01865 0.25 -2.0 464,316 + HMPREF1078_RS01865 0.25 -1.4 464,316 + HMPREF1078_RS01865 0.25 +0.2 464,340 - HMPREF1078_RS01865 0.28 -0.0 464,625 + HMPREF1078_RS01865 0.65 +0.2 464,638 + HMPREF1078_RS01865 0.67 +0.1 464,638 + HMPREF1078_RS01865 0.67 +0.2 464,666 + HMPREF1078_RS01865 0.70 -0.7 464,666 + HMPREF1078_RS01865 0.70 +2.4 464,667 - HMPREF1078_RS01865 0.70 -1.6 464,858 - -2.0 464,893 - -3.7 464,906 + -0.7 464,914 - -2.9 464,921 - -2.7 464,934 - -0.9 464,986 + -1.0 464,986 + -4.2 464,987 - -2.2 465,117 + HMPREF1078_RS01870 0.21 -1.5
Or see this region's nucleotide sequence