Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01825 and HMPREF1078_RS01830 are separated by 158 nucleotides HMPREF1078_RS01830 and HMPREF1078_RS01835 are separated by 105 nucleotides HMPREF1078_RS01835 and HMPREF1078_RS01840 are separated by 9 nucleotides
HMPREF1078_RS01825: HMPREF1078_RS01825 - HU family DNA-binding protein, at 455,160 to 456,314
_RS01825
HMPREF1078_RS01830: HMPREF1078_RS01830 - MoxR family ATPase, at 456,473 to 457,468
_RS01830
HMPREF1078_RS01835: HMPREF1078_RS01835 - DUF58 domain-containing protein, at 457,574 to 458,443
_RS01835
HMPREF1078_RS01840: HMPREF1078_RS01840 - hypothetical protein, at 458,453 to 459,469
_RS01840
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.493 kb on - strand, within HMPREF1078_RS01825 at 455.499 kb on - strand, within HMPREF1078_RS01825 at 455.527 kb on + strand, within HMPREF1078_RS01825 at 455.528 kb on - strand, within HMPREF1078_RS01825 at 455.700 kb on - strand, within HMPREF1078_RS01825 at 455.733 kb on - strand, within HMPREF1078_RS01825 at 455.733 kb on - strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.843 kb on + strand, within HMPREF1078_RS01825 at 455.844 kb on - strand, within HMPREF1078_RS01825 at 456.120 kb on + strand, within HMPREF1078_RS01825 at 456.120 kb on + strand, within HMPREF1078_RS01825 at 456.120 kb on + strand, within HMPREF1078_RS01825 at 456.124 kb on - strand, within HMPREF1078_RS01825 at 456.147 kb on + strand, within HMPREF1078_RS01825 at 456.148 kb on - strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.153 kb on + strand, within HMPREF1078_RS01825 at 456.154 kb on - strand, within HMPREF1078_RS01825 at 456.154 kb on - strand, within HMPREF1078_RS01825 at 456.154 kb on - strand, within HMPREF1078_RS01825 at 456.159 kb on + strand, within HMPREF1078_RS01825 at 456.159 kb on + strand, within HMPREF1078_RS01825 at 456.160 kb on - strand, within HMPREF1078_RS01825 at 456.160 kb on - strand, within HMPREF1078_RS01825 at 456.160 kb on - strand, within HMPREF1078_RS01825 at 456.161 kb on + strand, within HMPREF1078_RS01825 at 456.161 kb on + strand, within HMPREF1078_RS01825 at 456.161 kb on + strand, within HMPREF1078_RS01825 at 456.162 kb on - strand, within HMPREF1078_RS01825 at 456.162 kb on - strand, within HMPREF1078_RS01825 at 456.162 kb on - strand, within HMPREF1078_RS01825 at 456.164 kb on + strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.165 kb on - strand, within HMPREF1078_RS01825 at 456.295 kb on + strand at 456.296 kb on - strand at 456.312 kb on + strand at 456.366 kb on - strand at 456.402 kb on + strand at 456.455 kb on + strand at 456.457 kb on + strand at 456.544 kb on + strand at 456.564 kb on + strand at 456.701 kb on + strand, within HMPREF1078_RS01830 at 456.701 kb on + strand, within HMPREF1078_RS01830 at 456.701 kb on + strand, within HMPREF1078_RS01830 at 456.761 kb on + strand, within HMPREF1078_RS01830 at 456.914 kb on + strand, within HMPREF1078_RS01830 at 456.914 kb on + strand, within HMPREF1078_RS01830 at 456.999 kb on + strand, within HMPREF1078_RS01830 at 457.072 kb on + strand, within HMPREF1078_RS01830 at 457.135 kb on + strand, within HMPREF1078_RS01830 at 457.185 kb on + strand, within HMPREF1078_RS01830 at 457.185 kb on + strand, within HMPREF1078_RS01830 at 457.356 kb on + strand, within HMPREF1078_RS01830 at 457.470 kb on + strand at 457.470 kb on + strand at 457.534 kb on + strand at 457.534 kb on + strand at 457.570 kb on + strand at 457.760 kb on + strand, within HMPREF1078_RS01835 at 458.003 kb on + strand, within HMPREF1078_RS01835 at 458.198 kb on + strand, within HMPREF1078_RS01835 at 458.198 kb on + strand, within HMPREF1078_RS01835 at 458.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 455,493 - HMPREF1078_RS01825 0.29 +0.1 455,499 - HMPREF1078_RS01825 0.29 -1.6 455,527 + HMPREF1078_RS01825 0.32 +0.1 455,528 - HMPREF1078_RS01825 0.32 -1.8 455,700 - HMPREF1078_RS01825 0.47 +0.4 455,733 - HMPREF1078_RS01825 0.50 +0.4 455,733 - HMPREF1078_RS01825 0.50 -0.6 455,843 + HMPREF1078_RS01825 0.59 -2.2 455,843 + HMPREF1078_RS01825 0.59 +1.5 455,843 + HMPREF1078_RS01825 0.59 +0.2 455,843 + HMPREF1078_RS01825 0.59 -2.0 455,844 - HMPREF1078_RS01825 0.59 +0.1 456,120 + HMPREF1078_RS01825 0.83 +1.0 456,120 + HMPREF1078_RS01825 0.83 -1.4 456,120 + HMPREF1078_RS01825 0.83 -0.2 456,124 - HMPREF1078_RS01825 0.83 +0.3 456,147 + HMPREF1078_RS01825 0.85 +0.1 456,148 - HMPREF1078_RS01825 0.86 -2.1 456,153 + HMPREF1078_RS01825 0.86 -1.8 456,153 + HMPREF1078_RS01825 0.86 -0.6 456,153 + HMPREF1078_RS01825 0.86 +0.3 456,153 + HMPREF1078_RS01825 0.86 -0.3 456,154 - HMPREF1078_RS01825 0.86 -0.2 456,154 - HMPREF1078_RS01825 0.86 +0.2 456,154 - HMPREF1078_RS01825 0.86 +0.6 456,159 + HMPREF1078_RS01825 0.86 +1.3 456,159 + HMPREF1078_RS01825 0.86 -0.0 456,160 - HMPREF1078_RS01825 0.87 -0.8 456,160 - HMPREF1078_RS01825 0.87 -0.1 456,160 - HMPREF1078_RS01825 0.87 -0.6 456,161 + HMPREF1078_RS01825 0.87 -0.0 456,161 + HMPREF1078_RS01825 0.87 +1.1 456,161 + HMPREF1078_RS01825 0.87 -0.6 456,162 - HMPREF1078_RS01825 0.87 +0.1 456,162 - HMPREF1078_RS01825 0.87 +0.9 456,162 - HMPREF1078_RS01825 0.87 +1.0 456,164 + HMPREF1078_RS01825 0.87 -0.0 456,165 - HMPREF1078_RS01825 0.87 +1.2 456,165 - HMPREF1078_RS01825 0.87 +0.1 456,165 - HMPREF1078_RS01825 0.87 +0.3 456,165 - HMPREF1078_RS01825 0.87 -0.3 456,295 + +0.3 456,296 - -1.0 456,312 + +0.3 456,366 - -0.4 456,402 + -0.0 456,455 + -0.8 456,457 + -0.7 456,544 + +1.0 456,564 + -1.8 456,701 + HMPREF1078_RS01830 0.23 -1.0 456,701 + HMPREF1078_RS01830 0.23 -1.0 456,701 + HMPREF1078_RS01830 0.23 -1.4 456,761 + HMPREF1078_RS01830 0.29 +1.0 456,914 + HMPREF1078_RS01830 0.44 -0.0 456,914 + HMPREF1078_RS01830 0.44 +1.0 456,999 + HMPREF1078_RS01830 0.53 +1.0 457,072 + HMPREF1078_RS01830 0.60 -0.0 457,135 + HMPREF1078_RS01830 0.66 -0.0 457,185 + HMPREF1078_RS01830 0.71 -1.0 457,185 + HMPREF1078_RS01830 0.71 -1.4 457,356 + HMPREF1078_RS01830 0.89 -1.4 457,470 + +0.6 457,470 + -0.5 457,534 + +0.5 457,534 + -1.2 457,570 + +2.0 457,760 + HMPREF1078_RS01835 0.21 +1.0 458,003 + HMPREF1078_RS01835 0.49 -1.0 458,198 + HMPREF1078_RS01835 0.72 -1.6 458,198 + HMPREF1078_RS01835 0.72 -0.0 458,437 + -0.4
Or see this region's nucleotide sequence