Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01445 and HMPREF1078_RS01450 are separated by 130 nucleotides HMPREF1078_RS01450 and HMPREF1078_RS01455 are separated by 118 nucleotides HMPREF1078_RS01455 and HMPREF1078_RS01460 are separated by 39 nucleotides
HMPREF1078_RS01445: HMPREF1078_RS01445 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 370,611 to 374,606
_RS01445
HMPREF1078_RS01450: HMPREF1078_RS01450 - cytochrome c biogenesis protein CcsA, at 374,737 to 377,172
_RS01450
HMPREF1078_RS01455: HMPREF1078_RS01455 - hypothetical protein, at 377,291 to 377,605
_RS01455
HMPREF1078_RS01460: HMPREF1078_RS01460 - dihydroxyacetone kinase subunit DhaK, at 377,645 to 378,661
_RS01460
Position (kb) 374
375
376
377
378 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 373.854 kb on - strand, within HMPREF1078_RS01445 at 374.181 kb on + strand, within HMPREF1078_RS01445 at 374.261 kb on - strand at 374.296 kb on - strand at 374.301 kb on + strand at 374.301 kb on + strand at 374.304 kb on + strand at 374.305 kb on - strand at 374.306 kb on + strand at 374.307 kb on - strand at 374.371 kb on - strand at 374.394 kb on + strand at 374.395 kb on - strand at 374.436 kb on + strand at 374.436 kb on + strand at 374.436 kb on + strand at 374.440 kb on + strand at 374.440 kb on + strand at 374.441 kb on - strand at 374.441 kb on - strand at 374.441 kb on - strand at 374.441 kb on - strand at 374.505 kb on + strand at 374.506 kb on - strand at 374.507 kb on + strand at 374.524 kb on - strand at 374.551 kb on - strand at 374.620 kb on + strand at 374.620 kb on + strand at 374.621 kb on - strand at 374.627 kb on + strand at 374.627 kb on + strand at 374.627 kb on + strand at 374.628 kb on - strand at 374.690 kb on + strand at 374.699 kb on + strand at 374.700 kb on - strand at 374.700 kb on - strand at 374.723 kb on + strand at 374.724 kb on - strand at 374.800 kb on + strand at 374.800 kb on + strand at 374.848 kb on - strand at 374.873 kb on - strand at 374.923 kb on - strand at 375.118 kb on - strand, within HMPREF1078_RS01450 at 375.257 kb on + strand, within HMPREF1078_RS01450 at 375.362 kb on - strand, within HMPREF1078_RS01450 at 375.412 kb on - strand, within HMPREF1078_RS01450 at 375.426 kb on + strand, within HMPREF1078_RS01450 at 375.474 kb on - strand, within HMPREF1078_RS01450 at 375.515 kb on + strand, within HMPREF1078_RS01450 at 375.627 kb on + strand, within HMPREF1078_RS01450 at 375.663 kb on - strand, within HMPREF1078_RS01450 at 375.663 kb on - strand, within HMPREF1078_RS01450 at 375.663 kb on - strand, within HMPREF1078_RS01450 at 375.666 kb on + strand, within HMPREF1078_RS01450 at 375.667 kb on - strand, within HMPREF1078_RS01450 at 375.675 kb on + strand, within HMPREF1078_RS01450 at 375.685 kb on - strand, within HMPREF1078_RS01450 at 375.796 kb on + strand, within HMPREF1078_RS01450 at 375.797 kb on - strand, within HMPREF1078_RS01450 at 375.824 kb on - strand, within HMPREF1078_RS01450 at 375.825 kb on + strand, within HMPREF1078_RS01450 at 375.883 kb on + strand, within HMPREF1078_RS01450 at 375.883 kb on + strand, within HMPREF1078_RS01450 at 375.885 kb on + strand, within HMPREF1078_RS01450 at 375.885 kb on + strand, within HMPREF1078_RS01450 at 375.907 kb on - strand, within HMPREF1078_RS01450 at 376.017 kb on + strand, within HMPREF1078_RS01450 at 376.024 kb on + strand, within HMPREF1078_RS01450 at 376.024 kb on + strand, within HMPREF1078_RS01450 at 376.024 kb on + strand, within HMPREF1078_RS01450 at 376.025 kb on - strand, within HMPREF1078_RS01450 at 376.096 kb on + strand, within HMPREF1078_RS01450 at 376.101 kb on - strand, within HMPREF1078_RS01450 at 376.101 kb on - strand, within HMPREF1078_RS01450 at 376.238 kb on - strand, within HMPREF1078_RS01450 at 376.276 kb on + strand, within HMPREF1078_RS01450 at 376.283 kb on - strand, within HMPREF1078_RS01450 at 376.355 kb on + strand, within HMPREF1078_RS01450 at 376.365 kb on - strand, within HMPREF1078_RS01450 at 376.398 kb on + strand, within HMPREF1078_RS01450 at 376.398 kb on + strand, within HMPREF1078_RS01450 at 376.398 kb on + strand, within HMPREF1078_RS01450 at 376.399 kb on - strand, within HMPREF1078_RS01450 at 376.399 kb on - strand, within HMPREF1078_RS01450 at 376.399 kb on - strand, within HMPREF1078_RS01450 at 376.471 kb on + strand, within HMPREF1078_RS01450 at 376.472 kb on - strand, within HMPREF1078_RS01450 at 376.519 kb on - strand, within HMPREF1078_RS01450 at 376.711 kb on - strand, within HMPREF1078_RS01450 at 376.765 kb on - strand, within HMPREF1078_RS01450 at 376.779 kb on + strand, within HMPREF1078_RS01450 at 376.966 kb on - strand at 377.039 kb on - strand at 377.090 kb on + strand at 377.090 kb on + strand at 377.091 kb on - strand at 377.091 kb on - strand at 377.098 kb on + strand at 377.104 kb on + strand at 377.104 kb on + strand at 377.105 kb on - strand at 377.105 kb on - strand at 377.120 kb on + strand at 377.146 kb on + strand at 377.177 kb on + strand at 377.177 kb on + strand at 377.178 kb on - strand at 377.179 kb on + strand at 377.179 kb on + strand at 377.179 kb on + strand at 377.180 kb on - strand at 377.223 kb on + strand at 377.224 kb on - strand at 377.283 kb on - strand at 377.283 kb on - strand at 377.287 kb on - strand at 377.335 kb on - strand, within HMPREF1078_RS01455 at 377.345 kb on - strand, within HMPREF1078_RS01455 at 377.345 kb on - strand, within HMPREF1078_RS01455 at 377.367 kb on + strand, within HMPREF1078_RS01455 at 377.382 kb on - strand, within HMPREF1078_RS01455 at 377.406 kb on - strand, within HMPREF1078_RS01455 at 377.448 kb on + strand, within HMPREF1078_RS01455 at 377.471 kb on + strand, within HMPREF1078_RS01455 at 377.472 kb on - strand, within HMPREF1078_RS01455 at 377.472 kb on - strand, within HMPREF1078_RS01455 at 377.532 kb on + strand, within HMPREF1078_RS01455 at 377.613 kb on - strand at 377.615 kb on + strand at 377.616 kb on - strand at 377.621 kb on - strand at 377.621 kb on - strand at 377.621 kb on - strand at 377.624 kb on + strand at 377.624 kb on + strand at 377.624 kb on + strand at 377.639 kb on + strand at 377.640 kb on - strand at 377.640 kb on - strand at 377.641 kb on + strand at 377.641 kb on + strand at 377.642 kb on - strand at 377.711 kb on + strand at 377.711 kb on + strand at 377.712 kb on - strand at 377.712 kb on - strand at 377.715 kb on + strand at 377.715 kb on + strand at 377.716 kb on - strand at 377.716 kb on - strand at 377.742 kb on + strand at 377.743 kb on - strand at 377.743 kb on - strand at 377.763 kb on + strand, within HMPREF1078_RS01460 at 377.858 kb on - strand, within HMPREF1078_RS01460 at 378.024 kb on + strand, within HMPREF1078_RS01460
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 373,854 - HMPREF1078_RS01445 0.81 +0.3 374,181 + HMPREF1078_RS01445 0.89 +0.3 374,261 - +1.0 374,296 - +1.0 374,301 + +0.2 374,301 + +0.6 374,304 + -1.2 374,305 - -0.0 374,306 + -1.6 374,307 - -0.6 374,371 - +0.2 374,394 + -0.0 374,395 - -1.0 374,436 + +0.2 374,436 + +2.0 374,436 + -0.4 374,440 + -0.6 374,440 + +0.2 374,441 - -1.5 374,441 - -0.2 374,441 - -0.0 374,441 - +1.3 374,505 + +0.5 374,506 - +0.3 374,507 + -1.2 374,524 - +1.0 374,551 - +1.7 374,620 + +0.1 374,620 + +0.6 374,621 - +1.0 374,627 + +1.4 374,627 + +1.7 374,627 + -0.6 374,628 - +0.1 374,690 + +1.0 374,699 + -0.2 374,700 - -2.2 374,700 - -0.3 374,723 + +0.4 374,724 - -0.0 374,800 + -2.5 374,800 + -3.5 374,848 - -1.6 374,873 - -1.6 374,923 - -2.0 375,118 - HMPREF1078_RS01450 0.16 -2.8 375,257 + HMPREF1078_RS01450 0.21 -4.6 375,362 - HMPREF1078_RS01450 0.26 -3.5 375,412 - HMPREF1078_RS01450 0.28 -1.0 375,426 + HMPREF1078_RS01450 0.28 -0.3 375,474 - HMPREF1078_RS01450 0.30 -2.1 375,515 + HMPREF1078_RS01450 0.32 -0.6 375,627 + HMPREF1078_RS01450 0.37 -1.1 375,663 - HMPREF1078_RS01450 0.38 -0.9 375,663 - HMPREF1078_RS01450 0.38 -2.2 375,663 - HMPREF1078_RS01450 0.38 -0.2 375,666 + HMPREF1078_RS01450 0.38 -1.3 375,667 - HMPREF1078_RS01450 0.38 -2.5 375,675 + HMPREF1078_RS01450 0.39 -1.1 375,685 - HMPREF1078_RS01450 0.39 -2.0 375,796 + HMPREF1078_RS01450 0.43 -2.3 375,797 - HMPREF1078_RS01450 0.44 -0.6 375,824 - HMPREF1078_RS01450 0.45 -2.3 375,825 + HMPREF1078_RS01450 0.45 -1.6 375,883 + HMPREF1078_RS01450 0.47 +0.6 375,883 + HMPREF1078_RS01450 0.47 -2.1 375,885 + HMPREF1078_RS01450 0.47 -2.4 375,885 + HMPREF1078_RS01450 0.47 -0.9 375,907 - HMPREF1078_RS01450 0.48 -1.0 376,017 + HMPREF1078_RS01450 0.53 -2.5 376,024 + HMPREF1078_RS01450 0.53 -1.8 376,024 + HMPREF1078_RS01450 0.53 -3.0 376,024 + HMPREF1078_RS01450 0.53 -0.7 376,025 - HMPREF1078_RS01450 0.53 -2.9 376,096 + HMPREF1078_RS01450 0.56 -2.2 376,101 - HMPREF1078_RS01450 0.56 -2.6 376,101 - HMPREF1078_RS01450 0.56 -1.9 376,238 - HMPREF1078_RS01450 0.62 -1.3 376,276 + HMPREF1078_RS01450 0.63 -2.5 376,283 - HMPREF1078_RS01450 0.63 -3.8 376,355 + HMPREF1078_RS01450 0.66 +0.4 376,365 - HMPREF1078_RS01450 0.67 -1.0 376,398 + HMPREF1078_RS01450 0.68 -2.0 376,398 + HMPREF1078_RS01450 0.68 -1.6 376,398 + HMPREF1078_RS01450 0.68 -1.3 376,399 - HMPREF1078_RS01450 0.68 -2.4 376,399 - HMPREF1078_RS01450 0.68 +0.7 376,399 - HMPREF1078_RS01450 0.68 +2.0 376,471 + HMPREF1078_RS01450 0.71 -2.2 376,472 - HMPREF1078_RS01450 0.71 -1.8 376,519 - HMPREF1078_RS01450 0.73 -3.1 376,711 - HMPREF1078_RS01450 0.81 -0.8 376,765 - HMPREF1078_RS01450 0.83 -1.6 376,779 + HMPREF1078_RS01450 0.84 -2.8 376,966 - +0.6 377,039 - -2.2 377,090 + +3.0 377,090 + +0.0 377,091 - +0.5 377,091 - -0.8 377,098 + -1.8 377,104 + +0.2 377,104 + -2.2 377,105 - +0.1 377,105 - +0.7 377,120 + -1.5 377,146 + -1.9 377,177 + -0.6 377,177 + +2.5 377,178 - -2.1 377,179 + -1.9 377,179 + +0.3 377,179 + -0.5 377,180 - +1.7 377,223 + -2.2 377,224 - +1.3 377,283 - -2.2 377,283 - +0.1 377,287 - -1.1 377,335 - HMPREF1078_RS01455 0.14 +0.8 377,345 - HMPREF1078_RS01455 0.17 -1.0 377,345 - HMPREF1078_RS01455 0.17 -0.5 377,367 + HMPREF1078_RS01455 0.24 -1.0 377,382 - HMPREF1078_RS01455 0.29 +0.6 377,406 - HMPREF1078_RS01455 0.37 +0.8 377,448 + HMPREF1078_RS01455 0.50 -1.5 377,471 + HMPREF1078_RS01455 0.57 -0.6 377,472 - HMPREF1078_RS01455 0.57 +0.6 377,472 - HMPREF1078_RS01455 0.57 -0.6 377,532 + HMPREF1078_RS01455 0.77 +0.0 377,613 - +1.2 377,615 + +0.9 377,616 - +0.4 377,621 - +0.0 377,621 - +1.0 377,621 - -0.8 377,624 + +0.8 377,624 + +0.3 377,624 + -2.0 377,639 + -0.3 377,640 - -0.8 377,640 - +0.0 377,641 + -0.2 377,641 + +0.3 377,642 - +0.8 377,711 + +0.0 377,711 + -0.9 377,712 - +0.6 377,712 - -2.6 377,715 + -0.5 377,715 + +1.8 377,716 - -3.2 377,716 - -1.2 377,742 + -0.1 377,743 - +0.1 377,743 - -1.6 377,763 + HMPREF1078_RS01460 0.12 +1.0 377,858 - HMPREF1078_RS01460 0.21 -0.2 378,024 + HMPREF1078_RS01460 0.37 -0.8
Or see this region's nucleotide sequence