Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01380 and HMPREF1078_RS01385 are separated by 2 nucleotides HMPREF1078_RS01385 and HMPREF1078_RS01390 are separated by 226 nucleotides
HMPREF1078_RS01380: HMPREF1078_RS01380 - M48 family metallopeptidase, at 357,213 to 358,181
_RS01380
HMPREF1078_RS01385: HMPREF1078_RS01385 - LemA family protein, at 358,184 to 358,741
_RS01385
HMPREF1078_RS01390: HMPREF1078_RS01390 - DUF418 domain-containing protein, at 358,968 to 360,173
_RS01390
Position (kb) 358
359 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 357.198 kb on - strand at 357.234 kb on + strand at 357.277 kb on - strand at 357.334 kb on - strand, within HMPREF1078_RS01380 at 357.334 kb on - strand, within HMPREF1078_RS01380 at 357.519 kb on + strand, within HMPREF1078_RS01380 at 357.577 kb on + strand, within HMPREF1078_RS01380 at 357.581 kb on - strand, within HMPREF1078_RS01380 at 357.754 kb on + strand, within HMPREF1078_RS01380 at 357.842 kb on + strand, within HMPREF1078_RS01380 at 357.842 kb on + strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.846 kb on + strand, within HMPREF1078_RS01380 at 357.846 kb on + strand, within HMPREF1078_RS01380 at 357.858 kb on + strand, within HMPREF1078_RS01380 at 357.865 kb on + strand, within HMPREF1078_RS01380 at 357.866 kb on - strand, within HMPREF1078_RS01380 at 357.866 kb on - strand, within HMPREF1078_RS01380 at 357.941 kb on - strand, within HMPREF1078_RS01380 at 357.957 kb on + strand, within HMPREF1078_RS01380 at 357.957 kb on + strand, within HMPREF1078_RS01380 at 357.957 kb on + strand, within HMPREF1078_RS01380 at 357.963 kb on + strand, within HMPREF1078_RS01380 at 357.964 kb on - strand, within HMPREF1078_RS01380 at 357.964 kb on - strand, within HMPREF1078_RS01380 at 357.964 kb on - strand, within HMPREF1078_RS01380 at 357.975 kb on + strand, within HMPREF1078_RS01380 at 357.976 kb on - strand, within HMPREF1078_RS01380 at 357.976 kb on - strand, within HMPREF1078_RS01380 at 357.976 kb on - strand, within HMPREF1078_RS01380 at 357.979 kb on + strand, within HMPREF1078_RS01380 at 357.979 kb on + strand, within HMPREF1078_RS01380 at 357.980 kb on - strand, within HMPREF1078_RS01380 at 357.980 kb on - strand, within HMPREF1078_RS01380 at 357.980 kb on - strand, within HMPREF1078_RS01380 at 358.164 kb on + strand at 358.165 kb on - strand at 358.174 kb on + strand at 358.175 kb on - strand at 358.175 kb on - strand at 358.175 kb on - strand at 358.185 kb on + strand at 358.248 kb on + strand, within HMPREF1078_RS01385 at 358.567 kb on - strand, within HMPREF1078_RS01385 at 358.622 kb on + strand, within HMPREF1078_RS01385 at 358.721 kb on + strand at 358.737 kb on + strand at 358.775 kb on + strand at 358.775 kb on + strand at 358.811 kb on + strand at 358.888 kb on + strand at 359.007 kb on - strand at 359.007 kb on - strand at 359.084 kb on + strand at 359.154 kb on - strand, within HMPREF1078_RS01390 at 359.210 kb on - strand, within HMPREF1078_RS01390 at 359.344 kb on + strand, within HMPREF1078_RS01390 at 359.345 kb on - strand, within HMPREF1078_RS01390 at 359.345 kb on - strand, within HMPREF1078_RS01390 at 359.345 kb on - strand, within HMPREF1078_RS01390 at 359.347 kb on - strand, within HMPREF1078_RS01390 at 359.347 kb on - strand, within HMPREF1078_RS01390 at 359.381 kb on + strand, within HMPREF1078_RS01390 at 359.381 kb on + strand, within HMPREF1078_RS01390 at 359.382 kb on - strand, within HMPREF1078_RS01390 at 359.457 kb on + strand, within HMPREF1078_RS01390 at 359.458 kb on - strand, within HMPREF1078_RS01390 at 359.458 kb on - strand, within HMPREF1078_RS01390 at 359.459 kb on + strand, within HMPREF1078_RS01390 at 359.459 kb on + strand, within HMPREF1078_RS01390 at 359.628 kb on + strand, within HMPREF1078_RS01390 at 359.629 kb on - strand, within HMPREF1078_RS01390 at 359.653 kb on + strand, within HMPREF1078_RS01390 at 359.690 kb on + strand, within HMPREF1078_RS01390
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 357,198 - -2.3 357,234 + +0.7 357,277 - -0.5 357,334 - HMPREF1078_RS01380 0.12 -0.3 357,334 - HMPREF1078_RS01380 0.12 +1.6 357,519 + HMPREF1078_RS01380 0.32 -0.5 357,577 + HMPREF1078_RS01380 0.38 +0.3 357,581 - HMPREF1078_RS01380 0.38 +1.6 357,754 + HMPREF1078_RS01380 0.56 -2.0 357,842 + HMPREF1078_RS01380 0.65 -0.7 357,842 + HMPREF1078_RS01380 0.65 +0.5 357,843 - HMPREF1078_RS01380 0.65 -0.8 357,843 - HMPREF1078_RS01380 0.65 +1.2 357,843 - HMPREF1078_RS01380 0.65 -1.3 357,843 - HMPREF1078_RS01380 0.65 +1.0 357,843 - HMPREF1078_RS01380 0.65 -1.4 357,846 + HMPREF1078_RS01380 0.65 -2.3 357,846 + HMPREF1078_RS01380 0.65 -0.6 357,858 + HMPREF1078_RS01380 0.67 +0.2 357,865 + HMPREF1078_RS01380 0.67 -0.4 357,866 - HMPREF1078_RS01380 0.67 -1.0 357,866 - HMPREF1078_RS01380 0.67 -0.2 357,941 - HMPREF1078_RS01380 0.75 -0.2 357,957 + HMPREF1078_RS01380 0.77 -0.3 357,957 + HMPREF1078_RS01380 0.77 +1.2 357,957 + HMPREF1078_RS01380 0.77 -1.8 357,963 + HMPREF1078_RS01380 0.77 +0.3 357,964 - HMPREF1078_RS01380 0.78 +2.5 357,964 - HMPREF1078_RS01380 0.78 -1.3 357,964 - HMPREF1078_RS01380 0.78 -3.3 357,975 + HMPREF1078_RS01380 0.79 -0.0 357,976 - HMPREF1078_RS01380 0.79 +1.0 357,976 - HMPREF1078_RS01380 0.79 +1.0 357,976 - HMPREF1078_RS01380 0.79 +0.3 357,979 + HMPREF1078_RS01380 0.79 -0.0 357,979 + HMPREF1078_RS01380 0.79 +0.9 357,980 - HMPREF1078_RS01380 0.79 +1.1 357,980 - HMPREF1078_RS01380 0.79 +1.0 357,980 - HMPREF1078_RS01380 0.79 +1.0 358,164 + +0.0 358,165 - -1.5 358,174 + +1.7 358,175 - -2.3 358,175 - +0.2 358,175 - +1.0 358,185 + -0.8 358,248 + HMPREF1078_RS01385 0.11 -2.2 358,567 - HMPREF1078_RS01385 0.69 -1.6 358,622 + HMPREF1078_RS01385 0.78 -0.8 358,721 + -0.7 358,737 + -0.3 358,775 + -0.9 358,775 + +1.4 358,811 + -5.1 358,888 + -0.8 359,007 - -0.6 359,007 - +1.0 359,084 + -1.0 359,154 - HMPREF1078_RS01390 0.15 -0.3 359,210 - HMPREF1078_RS01390 0.20 -0.4 359,344 + HMPREF1078_RS01390 0.31 +1.2 359,345 - HMPREF1078_RS01390 0.31 -1.6 359,345 - HMPREF1078_RS01390 0.31 -1.5 359,345 - HMPREF1078_RS01390 0.31 +0.9 359,347 - HMPREF1078_RS01390 0.31 +1.7 359,347 - HMPREF1078_RS01390 0.31 +0.5 359,381 + HMPREF1078_RS01390 0.34 -1.0 359,381 + HMPREF1078_RS01390 0.34 +1.2 359,382 - HMPREF1078_RS01390 0.34 -0.6 359,457 + HMPREF1078_RS01390 0.41 +1.8 359,458 - HMPREF1078_RS01390 0.41 +2.6 359,458 - HMPREF1078_RS01390 0.41 -0.4 359,459 + HMPREF1078_RS01390 0.41 +0.5 359,459 + HMPREF1078_RS01390 0.41 +0.6 359,628 + HMPREF1078_RS01390 0.55 +0.5 359,629 - HMPREF1078_RS01390 0.55 +1.4 359,653 + HMPREF1078_RS01390 0.57 -4.1 359,690 + HMPREF1078_RS01390 0.60 -0.6
Or see this region's nucleotide sequence