Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS01170

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS01165 and HMPREF1078_RS01170 are separated by 38 nucleotidesHMPREF1078_RS01170 and HMPREF1078_RS01175 overlap by 4 nucleotidesHMPREF1078_RS01175 and HMPREF1078_RS01180 overlap by 17 nucleotides HMPREF1078_RS01165: HMPREF1078_RS01165 - agmatine deiminase family protein, at 291,472 to 292,509 _RS01165 HMPREF1078_RS01170: HMPREF1078_RS01170 - carbon-nitrogen hydrolase, at 292,548 to 293,423 _RS01170 HMPREF1078_RS01175: HMPREF1078_RS01175 - aminodeoxychorismate synthase component I, at 293,420 to 294,421 _RS01175 HMPREF1078_RS01180: HMPREF1078_RS01180 - aminotransferase class IV, at 294,405 to 294,995 _RS01180 Position (kb) 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 291.564 kb on - strandat 291.566 kb on + strandat 291.567 kb on - strandat 291.590 kb on + strand, within HMPREF1078_RS01165at 291.720 kb on + strand, within HMPREF1078_RS01165at 291.721 kb on - strand, within HMPREF1078_RS01165at 291.721 kb on - strand, within HMPREF1078_RS01165at 291.721 kb on - strand, within HMPREF1078_RS01165at 291.747 kb on + strand, within HMPREF1078_RS01165at 291.748 kb on - strand, within HMPREF1078_RS01165at 291.753 kb on - strand, within HMPREF1078_RS01165at 291.779 kb on - strand, within HMPREF1078_RS01165at 291.891 kb on + strand, within HMPREF1078_RS01165at 291.891 kb on + strand, within HMPREF1078_RS01165at 291.892 kb on - strand, within HMPREF1078_RS01165at 291.892 kb on - strand, within HMPREF1078_RS01165at 291.963 kb on - strand, within HMPREF1078_RS01165at 292.019 kb on - strand, within HMPREF1078_RS01165at 292.070 kb on - strand, within HMPREF1078_RS01165at 292.131 kb on + strand, within HMPREF1078_RS01165at 292.132 kb on - strand, within HMPREF1078_RS01165at 292.132 kb on - strand, within HMPREF1078_RS01165at 292.141 kb on + strand, within HMPREF1078_RS01165at 292.206 kb on - strand, within HMPREF1078_RS01165at 292.348 kb on + strand, within HMPREF1078_RS01165at 292.350 kb on + strand, within HMPREF1078_RS01165at 292.351 kb on - strand, within HMPREF1078_RS01165at 292.413 kb on + strandat 292.415 kb on + strandat 292.416 kb on - strandat 292.529 kb on - strandat 292.555 kb on + strandat 292.577 kb on + strandat 292.599 kb on - strandat 292.619 kb on + strandat 292.832 kb on + strand, within HMPREF1078_RS01170at 292.832 kb on + strand, within HMPREF1078_RS01170at 292.892 kb on + strand, within HMPREF1078_RS01170at 292.914 kb on + strand, within HMPREF1078_RS01170at 292.915 kb on - strand, within HMPREF1078_RS01170at 292.987 kb on + strand, within HMPREF1078_RS01170at 292.987 kb on + strand, within HMPREF1078_RS01170at 293.119 kb on + strand, within HMPREF1078_RS01170at 293.120 kb on - strand, within HMPREF1078_RS01170at 293.182 kb on + strand, within HMPREF1078_RS01170at 293.294 kb on + strand, within HMPREF1078_RS01170at 293.309 kb on - strand, within HMPREF1078_RS01170at 293.360 kb on + strandat 293.420 kb on - strandat 293.429 kb on + strandat 293.440 kb on - strandat 293.440 kb on - strandat 293.456 kb on - strandat 293.505 kb on - strandat 293.564 kb on + strand, within HMPREF1078_RS01175at 293.565 kb on - strand, within HMPREF1078_RS01175at 293.690 kb on - strand, within HMPREF1078_RS01175at 293.705 kb on - strand, within HMPREF1078_RS01175at 293.705 kb on - strand, within HMPREF1078_RS01175at 293.705 kb on - strand, within HMPREF1078_RS01175at 293.806 kb on + strand, within HMPREF1078_RS01175at 293.806 kb on + strand, within HMPREF1078_RS01175at 293.807 kb on - strand, within HMPREF1078_RS01175at 293.807 kb on - strand, within HMPREF1078_RS01175at 293.876 kb on - strand, within HMPREF1078_RS01175at 293.911 kb on + strand, within HMPREF1078_RS01175at 293.911 kb on + strand, within HMPREF1078_RS01175at 293.971 kb on + strand, within HMPREF1078_RS01175at 294.004 kb on + strand, within HMPREF1078_RS01175at 294.041 kb on + strand, within HMPREF1078_RS01175at 294.045 kb on + strand, within HMPREF1078_RS01175at 294.046 kb on - strand, within HMPREF1078_RS01175at 294.046 kb on - strand, within HMPREF1078_RS01175at 294.239 kb on + strand, within HMPREF1078_RS01175at 294.239 kb on + strand, within HMPREF1078_RS01175at 294.257 kb on + strand, within HMPREF1078_RS01175at 294.271 kb on + strand, within HMPREF1078_RS01175at 294.380 kb on + strandat 294.383 kb on - strandat 294.402 kb on + strandat 294.402 kb on + strandat 294.403 kb on - strandat 294.404 kb on + strandat 294.404 kb on + strandat 294.405 kb on - strandat 294.412 kb on + strandat 294.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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291,564 - -3.4
291,566 + -3.2
291,567 - +1.0
291,590 + HMPREF1078_RS01165 0.11 -1.4
291,720 + HMPREF1078_RS01165 0.24 -2.1
291,721 - HMPREF1078_RS01165 0.24 -1.6
291,721 - HMPREF1078_RS01165 0.24 -0.6
291,721 - HMPREF1078_RS01165 0.24 -0.6
291,747 + HMPREF1078_RS01165 0.26 -0.8
291,748 - HMPREF1078_RS01165 0.27 -1.4
291,753 - HMPREF1078_RS01165 0.27 +1.0
291,779 - HMPREF1078_RS01165 0.30 -2.4
291,891 + HMPREF1078_RS01165 0.40 -1.9
291,891 + HMPREF1078_RS01165 0.40 -2.4
291,892 - HMPREF1078_RS01165 0.40 -2.7
291,892 - HMPREF1078_RS01165 0.40 +0.1
291,963 - HMPREF1078_RS01165 0.47 +1.0
292,019 - HMPREF1078_RS01165 0.53 +2.0
292,070 - HMPREF1078_RS01165 0.58 -0.0
292,131 + HMPREF1078_RS01165 0.63 +1.0
292,132 - HMPREF1078_RS01165 0.64 -2.7
292,132 - HMPREF1078_RS01165 0.64 -1.4
292,141 + HMPREF1078_RS01165 0.64 -0.2
292,206 - HMPREF1078_RS01165 0.71 -1.1
292,348 + HMPREF1078_RS01165 0.84 -1.7
292,350 + HMPREF1078_RS01165 0.85 -3.2
292,351 - HMPREF1078_RS01165 0.85 -1.5
292,413 + -1.9
292,415 + -2.0
292,416 - +2.5
292,529 - -0.0
292,555 + -0.0
292,577 + -2.4
292,599 - -1.6
292,619 + -1.9
292,832 + HMPREF1078_RS01170 0.32 +1.0
292,832 + HMPREF1078_RS01170 0.32 -1.9
292,892 + HMPREF1078_RS01170 0.39 +1.0
292,914 + HMPREF1078_RS01170 0.42 -1.6
292,915 - HMPREF1078_RS01170 0.42 -1.0
292,987 + HMPREF1078_RS01170 0.50 -3.0
292,987 + HMPREF1078_RS01170 0.50 -1.0
293,119 + HMPREF1078_RS01170 0.65 +1.0
293,120 - HMPREF1078_RS01170 0.65 -1.9
293,182 + HMPREF1078_RS01170 0.72 +0.4
293,294 + HMPREF1078_RS01170 0.85 -2.7
293,309 - HMPREF1078_RS01170 0.87 +2.5
293,360 + -0.6
293,420 - -0.9
293,429 + -2.4
293,440 - -0.6
293,440 - +0.3
293,456 - -2.0
293,505 - +1.2
293,564 + HMPREF1078_RS01175 0.14 +1.0
293,565 - HMPREF1078_RS01175 0.14 -1.2
293,690 - HMPREF1078_RS01175 0.27 +0.5
293,705 - HMPREF1078_RS01175 0.28 -1.3
293,705 - HMPREF1078_RS01175 0.28 -0.8
293,705 - HMPREF1078_RS01175 0.28 -0.0
293,806 + HMPREF1078_RS01175 0.39 -0.7
293,806 + HMPREF1078_RS01175 0.39 -2.1
293,807 - HMPREF1078_RS01175 0.39 +1.4
293,807 - HMPREF1078_RS01175 0.39 +1.4
293,876 - HMPREF1078_RS01175 0.46 +0.1
293,911 + HMPREF1078_RS01175 0.49 +1.0
293,911 + HMPREF1078_RS01175 0.49 -0.0
293,971 + HMPREF1078_RS01175 0.55 -2.9
294,004 + HMPREF1078_RS01175 0.58 -0.2
294,041 + HMPREF1078_RS01175 0.62 -1.4
294,045 + HMPREF1078_RS01175 0.62 +0.1
294,046 - HMPREF1078_RS01175 0.62 -0.0
294,046 - HMPREF1078_RS01175 0.62 +0.0
294,239 + HMPREF1078_RS01175 0.82 +1.0
294,239 + HMPREF1078_RS01175 0.82 -1.6
294,257 + HMPREF1078_RS01175 0.84 +2.5
294,271 + HMPREF1078_RS01175 0.85 -1.4
294,380 + +1.5
294,383 - -0.9
294,402 + -0.0
294,402 + +0.2
294,403 - -0.8
294,404 + +1.2
294,404 + -0.0
294,405 - +2.2
294,412 + -1.0
294,413 - -0.8

Or see this region's nucleotide sequence