Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00955

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00950 and HMPREF1078_RS00955 are separated by 8 nucleotidesHMPREF1078_RS00955 and HMPREF1078_RS00960 are separated by 75 nucleotidesHMPREF1078_RS00960 and HMPREF1078_RS00965 overlap by 4 nucleotides HMPREF1078_RS00950: HMPREF1078_RS00950 - V-type ATP synthase subunit A, at 231,943 to 233,700 _RS00950 HMPREF1078_RS00955: HMPREF1078_RS00955 - V-type ATP synthase subunit B, at 233,709 to 235,028 _RS00955 HMPREF1078_RS00960: HMPREF1078_RS00960 - V-type ATP synthase subunit D, at 235,104 to 235,727 _RS00960 HMPREF1078_RS00965: HMPREF1078_RS00965 - V-type ATPase 116kDa subunit family protein, at 235,724 to 237,544 _RS00965 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 232.712 kb on + strand, within HMPREF1078_RS00950at 232.713 kb on - strand, within HMPREF1078_RS00950at 232.762 kb on - strand, within HMPREF1078_RS00950at 232.800 kb on + strand, within HMPREF1078_RS00950at 232.800 kb on + strand, within HMPREF1078_RS00950at 232.815 kb on + strand, within HMPREF1078_RS00950at 232.816 kb on - strand, within HMPREF1078_RS00950at 232.816 kb on - strand, within HMPREF1078_RS00950at 232.833 kb on + strand, within HMPREF1078_RS00950at 232.871 kb on + strand, within HMPREF1078_RS00950at 232.871 kb on + strand, within HMPREF1078_RS00950at 232.871 kb on + strand, within HMPREF1078_RS00950at 232.871 kb on + strand, within HMPREF1078_RS00950at 232.871 kb on + strand, within HMPREF1078_RS00950at 232.871 kb on + strand, within HMPREF1078_RS00950at 232.872 kb on - strand, within HMPREF1078_RS00950at 232.872 kb on - strand, within HMPREF1078_RS00950at 232.872 kb on - strand, within HMPREF1078_RS00950at 232.872 kb on - strand, within HMPREF1078_RS00950at 232.872 kb on - strand, within HMPREF1078_RS00950at 232.872 kb on - strand, within HMPREF1078_RS00950at 232.872 kb on - strand, within HMPREF1078_RS00950at 232.874 kb on - strand, within HMPREF1078_RS00950at 232.874 kb on - strand, within HMPREF1078_RS00950at 232.875 kb on + strand, within HMPREF1078_RS00950at 232.876 kb on - strand, within HMPREF1078_RS00950at 232.876 kb on - strand, within HMPREF1078_RS00950at 232.897 kb on + strand, within HMPREF1078_RS00950at 233.048 kb on - strand, within HMPREF1078_RS00950at 233.066 kb on + strand, within HMPREF1078_RS00950at 233.076 kb on + strand, within HMPREF1078_RS00950at 233.182 kb on + strand, within HMPREF1078_RS00950at 233.211 kb on + strand, within HMPREF1078_RS00950at 233.245 kb on + strand, within HMPREF1078_RS00950at 233.254 kb on + strand, within HMPREF1078_RS00950at 233.281 kb on + strand, within HMPREF1078_RS00950at 233.281 kb on + strand, within HMPREF1078_RS00950at 233.281 kb on + strand, within HMPREF1078_RS00950at 233.282 kb on - strand, within HMPREF1078_RS00950at 233.282 kb on - strand, within HMPREF1078_RS00950at 233.283 kb on + strand, within HMPREF1078_RS00950at 233.296 kb on - strand, within HMPREF1078_RS00950at 233.340 kb on + strand, within HMPREF1078_RS00950at 233.340 kb on + strand, within HMPREF1078_RS00950at 233.341 kb on - strand, within HMPREF1078_RS00950at 233.341 kb on - strand, within HMPREF1078_RS00950at 233.396 kb on + strand, within HMPREF1078_RS00950at 233.397 kb on - strand, within HMPREF1078_RS00950at 233.397 kb on - strand, within HMPREF1078_RS00950at 233.403 kb on - strand, within HMPREF1078_RS00950at 233.407 kb on + strand, within HMPREF1078_RS00950at 233.428 kb on + strand, within HMPREF1078_RS00950at 233.621 kb on - strandat 233.621 kb on - strandat 233.698 kb on + strandat 233.701 kb on + strandat 233.708 kb on + strandat 233.708 kb on + strandat 233.734 kb on + strandat 233.734 kb on + strandat 233.735 kb on - strandat 233.737 kb on - strandat 233.738 kb on + strandat 233.765 kb on + strandat 233.792 kb on - strandat 233.897 kb on + strand, within HMPREF1078_RS00955at 234.116 kb on + strand, within HMPREF1078_RS00955at 234.117 kb on - strand, within HMPREF1078_RS00955at 234.117 kb on - strand, within HMPREF1078_RS00955at 234.124 kb on + strand, within HMPREF1078_RS00955at 234.178 kb on + strand, within HMPREF1078_RS00955at 234.178 kb on + strand, within HMPREF1078_RS00955at 234.219 kb on - strand, within HMPREF1078_RS00955at 234.252 kb on + strand, within HMPREF1078_RS00955at 234.269 kb on + strand, within HMPREF1078_RS00955at 234.270 kb on - strand, within HMPREF1078_RS00955at 234.270 kb on - strand, within HMPREF1078_RS00955at 234.275 kb on + strand, within HMPREF1078_RS00955at 234.299 kb on + strand, within HMPREF1078_RS00955at 234.311 kb on + strand, within HMPREF1078_RS00955at 234.337 kb on + strand, within HMPREF1078_RS00955at 234.338 kb on - strand, within HMPREF1078_RS00955at 234.338 kb on - strand, within HMPREF1078_RS00955at 234.344 kb on + strand, within HMPREF1078_RS00955at 234.345 kb on - strand, within HMPREF1078_RS00955at 234.379 kb on - strand, within HMPREF1078_RS00955at 234.439 kb on - strand, within HMPREF1078_RS00955at 234.632 kb on + strand, within HMPREF1078_RS00955at 234.633 kb on - strand, within HMPREF1078_RS00955at 234.633 kb on - strand, within HMPREF1078_RS00955at 234.633 kb on - strand, within HMPREF1078_RS00955at 234.639 kb on + strand, within HMPREF1078_RS00955at 234.639 kb on + strand, within HMPREF1078_RS00955at 234.639 kb on + strand, within HMPREF1078_RS00955at 234.639 kb on + strand, within HMPREF1078_RS00955at 234.640 kb on - strand, within HMPREF1078_RS00955at 234.640 kb on - strand, within HMPREF1078_RS00955at 234.661 kb on - strand, within HMPREF1078_RS00955at 234.675 kb on - strand, within HMPREF1078_RS00955at 234.796 kb on - strand, within HMPREF1078_RS00955at 234.863 kb on + strand, within HMPREF1078_RS00955at 234.863 kb on + strand, within HMPREF1078_RS00955at 234.864 kb on - strand, within HMPREF1078_RS00955at 234.864 kb on - strand, within HMPREF1078_RS00955at 234.886 kb on - strand, within HMPREF1078_RS00955at 235.056 kb on + strandat 235.069 kb on + strandat 235.070 kb on - strandat 235.070 kb on - strandat 235.070 kb on - strandat 235.070 kb on - strandat 235.090 kb on + strandat 235.090 kb on + strandat 235.090 kb on + strandat 235.091 kb on - strandat 235.096 kb on + strandat 235.097 kb on - strandat 235.580 kb on - strand, within HMPREF1078_RS00960at 235.595 kb on + strand, within HMPREF1078_RS00960at 235.596 kb on - strand, within HMPREF1078_RS00960at 235.676 kb on + strandat 235.692 kb on - strandat 235.724 kb on - strandat 235.729 kb on - strandat 235.731 kb on + strandat 235.745 kb on + strandat 235.746 kb on - strandat 235.758 kb on + strandat 235.759 kb on - strandat 235.760 kb on + strandat 235.761 kb on - strandat 235.765 kb on + strandat 235.766 kb on - strandat 235.766 kb on - strandat 235.772 kb on + strandat 235.772 kb on + strandat 235.773 kb on - strandat 235.854 kb on + strandat 235.884 kb on + strandat 235.885 kb on - strandat 235.885 kb on - strandat 235.885 kb on - strandat 235.885 kb on - strandat 235.885 kb on - strandat 235.888 kb on + strandat 235.889 kb on - strandat 236.026 kb on - strand, within HMPREF1078_RS00965at 236.026 kb on - strand, within HMPREF1078_RS00965

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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232,712 + HMPREF1078_RS00950 0.44 +1.0
232,713 - HMPREF1078_RS00950 0.44 -1.6
232,762 - HMPREF1078_RS00950 0.47 +1.0
232,800 + HMPREF1078_RS00950 0.49 -1.7
232,800 + HMPREF1078_RS00950 0.49 -2.6
232,815 + HMPREF1078_RS00950 0.50 -1.5
232,816 - HMPREF1078_RS00950 0.50 -2.5
232,816 - HMPREF1078_RS00950 0.50 -2.0
232,833 + HMPREF1078_RS00950 0.51 -1.6
232,871 + HMPREF1078_RS00950 0.53 -0.4
232,871 + HMPREF1078_RS00950 0.53 -2.2
232,871 + HMPREF1078_RS00950 0.53 -0.4
232,871 + HMPREF1078_RS00950 0.53 -0.0
232,871 + HMPREF1078_RS00950 0.53 -1.6
232,871 + HMPREF1078_RS00950 0.53 -0.9
232,872 - HMPREF1078_RS00950 0.53 -1.0
232,872 - HMPREF1078_RS00950 0.53 -1.9
232,872 - HMPREF1078_RS00950 0.53 -2.5
232,872 - HMPREF1078_RS00950 0.53 -0.6
232,872 - HMPREF1078_RS00950 0.53 -2.0
232,872 - HMPREF1078_RS00950 0.53 -3.1
232,872 - HMPREF1078_RS00950 0.53 -1.6
232,874 - HMPREF1078_RS00950 0.53 +3.3
232,874 - HMPREF1078_RS00950 0.53 -0.6
232,875 + HMPREF1078_RS00950 0.53 -0.9
232,876 - HMPREF1078_RS00950 0.53 -1.4
232,876 - HMPREF1078_RS00950 0.53 +0.5
232,897 + HMPREF1078_RS00950 0.54 -0.4
233,048 - HMPREF1078_RS00950 0.63 -2.6
233,066 + HMPREF1078_RS00950 0.64 -1.4
233,076 + HMPREF1078_RS00950 0.64 -1.0
233,182 + HMPREF1078_RS00950 0.70 -0.5
233,211 + HMPREF1078_RS00950 0.72 +0.4
233,245 + HMPREF1078_RS00950 0.74 -1.9
233,254 + HMPREF1078_RS00950 0.75 -0.2
233,281 + HMPREF1078_RS00950 0.76 -3.0
233,281 + HMPREF1078_RS00950 0.76 -1.7
233,281 + HMPREF1078_RS00950 0.76 -1.4
233,282 - HMPREF1078_RS00950 0.76 +0.4
233,282 - HMPREF1078_RS00950 0.76 -0.7
233,283 + HMPREF1078_RS00950 0.76 -2.0
233,296 - HMPREF1078_RS00950 0.77 -1.6
233,340 + HMPREF1078_RS00950 0.79 -1.0
233,340 + HMPREF1078_RS00950 0.79 -2.6
233,341 - HMPREF1078_RS00950 0.80 -2.9
233,341 - HMPREF1078_RS00950 0.80 +0.4
233,396 + HMPREF1078_RS00950 0.83 +2.0
233,397 - HMPREF1078_RS00950 0.83 -1.0
233,397 - HMPREF1078_RS00950 0.83 -0.3
233,403 - HMPREF1078_RS00950 0.83 -2.5
233,407 + HMPREF1078_RS00950 0.83 -0.0
233,428 + HMPREF1078_RS00950 0.84 -0.7
233,621 - -0.6
233,621 - -0.5
233,698 + +0.4
233,701 + -1.0
233,708 + -1.3
233,708 + -1.5
233,734 + -1.0
233,734 + -0.9
233,735 - -0.0
233,737 - +1.0
233,738 + -2.0
233,765 + -1.4
233,792 - -3.0
233,897 + HMPREF1078_RS00955 0.14 +1.0
234,116 + HMPREF1078_RS00955 0.31 -0.9
234,117 - HMPREF1078_RS00955 0.31 -1.9
234,117 - HMPREF1078_RS00955 0.31 -1.9
234,124 + HMPREF1078_RS00955 0.31 -3.0
234,178 + HMPREF1078_RS00955 0.36 -2.0
234,178 + HMPREF1078_RS00955 0.36 -0.6
234,219 - HMPREF1078_RS00955 0.39 -1.4
234,252 + HMPREF1078_RS00955 0.41 +0.1
234,269 + HMPREF1078_RS00955 0.42 -2.7
234,270 - HMPREF1078_RS00955 0.42 -1.0
234,270 - HMPREF1078_RS00955 0.42 -1.9
234,275 + HMPREF1078_RS00955 0.43 -0.2
234,299 + HMPREF1078_RS00955 0.45 +0.4
234,311 + HMPREF1078_RS00955 0.46 -1.9
234,337 + HMPREF1078_RS00955 0.48 -2.0
234,338 - HMPREF1078_RS00955 0.48 -0.0
234,338 - HMPREF1078_RS00955 0.48 +0.4
234,344 + HMPREF1078_RS00955 0.48 -2.5
234,345 - HMPREF1078_RS00955 0.48 -0.6
234,379 - HMPREF1078_RS00955 0.51 -2.1
234,439 - HMPREF1078_RS00955 0.55 -0.6
234,632 + HMPREF1078_RS00955 0.70 -1.1
234,633 - HMPREF1078_RS00955 0.70 -2.4
234,633 - HMPREF1078_RS00955 0.70 -2.5
234,633 - HMPREF1078_RS00955 0.70 -0.6
234,639 + HMPREF1078_RS00955 0.70 -1.5
234,639 + HMPREF1078_RS00955 0.70 -0.2
234,639 + HMPREF1078_RS00955 0.70 -0.6
234,639 + HMPREF1078_RS00955 0.70 -1.4
234,640 - HMPREF1078_RS00955 0.71 -0.7
234,640 - HMPREF1078_RS00955 0.71 -1.0
234,661 - HMPREF1078_RS00955 0.72 -2.4
234,675 - HMPREF1078_RS00955 0.73 -1.6
234,796 - HMPREF1078_RS00955 0.82 -3.1
234,863 + HMPREF1078_RS00955 0.87 -1.9
234,863 + HMPREF1078_RS00955 0.87 -1.9
234,864 - HMPREF1078_RS00955 0.88 -2.7
234,864 - HMPREF1078_RS00955 0.88 -0.7
234,886 - HMPREF1078_RS00955 0.89 -0.0
235,056 + -1.9
235,069 + -0.9
235,070 - +0.4
235,070 - -3.1
235,070 - -1.6
235,070 - -1.9
235,090 + -1.4
235,090 + -0.5
235,090 + -0.6
235,091 - -0.1
235,096 + -0.6
235,097 - -0.5
235,580 - HMPREF1078_RS00960 0.76 -2.1
235,595 + HMPREF1078_RS00960 0.79 -2.1
235,596 - HMPREF1078_RS00960 0.79 -0.1
235,676 + -2.1
235,692 - -2.5
235,724 - -1.9
235,729 - +0.4
235,731 + -0.6
235,745 + -1.6
235,746 - -2.8
235,758 + -0.3
235,759 - -0.9
235,760 + -1.4
235,761 - -2.1
235,765 + -1.0
235,766 - -2.8
235,766 - -0.1
235,772 + -2.8
235,772 + -1.2
235,773 - -2.9
235,854 + -0.8
235,884 + -0.8
235,885 - -2.1
235,885 - -0.1
235,885 - -1.6
235,885 - -0.9
235,885 - -0.4
235,888 + -1.0
235,889 - +0.5
236,026 - HMPREF1078_RS00965 0.17 -1.7
236,026 - HMPREF1078_RS00965 0.17 +0.5

Or see this region's nucleotide sequence