Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00615

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
136,454	+		HMPREF1078_RS00610	0.43	-1.3
136,473	+		HMPREF1078_RS00610	0.44	-1.0
136,509	+		HMPREF1078_RS00610	0.46	+1.2
136,515	+		HMPREF1078_RS00610	0.46	-1.2
136,520	-		HMPREF1078_RS00610	0.47	-1.3
136,520	-		HMPREF1078_RS00610	0.47	-0.0
136,540	+		HMPREF1078_RS00610	0.48	+1.5
136,540	+		HMPREF1078_RS00610	0.48	-0.8
136,540	+		HMPREF1078_RS00610	0.48	+1.1
136,540	+		HMPREF1078_RS00610	0.48	+1.2
136,540	+		HMPREF1078_RS00610	0.48	-0.9
136,547	-		HMPREF1078_RS00610	0.48	+1.0
136,572	+		HMPREF1078_RS00610	0.50	-1.0
136,623	+		HMPREF1078_RS00610	0.53	-1.8
136,624	-		HMPREF1078_RS00610	0.53	-0.4
136,719	+		HMPREF1078_RS00610	0.58	-0.6
136,720	-		HMPREF1078_RS00610	0.58	-0.4
136,720	-		HMPREF1078_RS00610	0.58	-1.1
136,726	-		HMPREF1078_RS00610	0.59	-0.9
136,729	+		HMPREF1078_RS00610	0.59	-0.0
136,759	-		HMPREF1078_RS00610	0.61	+0.2
136,759	-		HMPREF1078_RS00610	0.61	+1.0
136,822	+		HMPREF1078_RS00610	0.64	-0.6
136,823	-		HMPREF1078_RS00610	0.64	-1.3
136,825	+		HMPREF1078_RS00610	0.65	-3.6
136,826	-		HMPREF1078_RS00610	0.65	-1.0
136,827	+		HMPREF1078_RS00610	0.65	+0.4
136,827	+		HMPREF1078_RS00610	0.65	-0.9
136,857	+		HMPREF1078_RS00610	0.66	-2.2
136,869	+		HMPREF1078_RS00610	0.67	+0.3
136,956	-		HMPREF1078_RS00610	0.72	+0.8
137,010	+		HMPREF1078_RS00610	0.76	-1.9
137,011	-		HMPREF1078_RS00610	0.76	+0.1
137,071	+		HMPREF1078_RS00610	0.79	-0.4
137,071	+		HMPREF1078_RS00610	0.79	+2.6
137,072	-		HMPREF1078_RS00610	0.79	+1.6
137,076	+		HMPREF1078_RS00610	0.79	-1.3
137,077	-		HMPREF1078_RS00610	0.79	-0.0
137,115	+		HMPREF1078_RS00610	0.82	-0.3
137,115	+		HMPREF1078_RS00610	0.82	+0.6
137,115	+		HMPREF1078_RS00610	0.82	+0.3
137,116	-		HMPREF1078_RS00610	0.82	+1.4
137,150	+		HMPREF1078_RS00610	0.84	-1.4
137,154	+		HMPREF1078_RS00610	0.84	+0.2
137,155	-		HMPREF1078_RS00610	0.84	+0.1
137,155	-		HMPREF1078_RS00610	0.84	-2.2
137,173	+		HMPREF1078_RS00610	0.85	+1.8
137,261	-				-1.6
137,367	+				-1.3
137,371	-				+0.2
137,425	+				+1.0
137,442	-				+0.7
137,446	-				+1.3
137,446	-				-0.8
137,455	+				-0.8
137,455	+				-1.6
137,456	-				+0.2
137,457	+				-2.1
137,471	+				-1.0
137,472	-				-0.6
137,473	+				+1.8
137,473	+				-0.8
137,473	+				+1.9
137,474	-				+0.3
137,474	-				+2.0
137,474	-				+1.3
137,474	-				-1.0
137,474	-				-0.1
137,474	-				-0.6
137,474	-				-0.1
137,474	-				-1.0
137,474	-				-2.6
137,484	-				-0.3
137,539	+				+0.6
137,552	+				-0.0
137,571	+		HMPREF1078_RS00615	0.10	-0.2
137,642	-		HMPREF1078_RS00615	0.16	-0.2
137,658	+		HMPREF1078_RS00615	0.18	-2.5
137,677	-		HMPREF1078_RS00615	0.19	-0.6
137,691	+		HMPREF1078_RS00615	0.21	-0.6
137,691	+		HMPREF1078_RS00615	0.21	+0.3
137,743	+		HMPREF1078_RS00615	0.25	+1.0
137,744	-		HMPREF1078_RS00615	0.25	-0.7
137,744	-		HMPREF1078_RS00615	0.25	-0.6
137,744	-		HMPREF1078_RS00615	0.25	-2.3
137,744	-		HMPREF1078_RS00615	0.25	-1.4
137,744	-		HMPREF1078_RS00615	0.25	-1.2
137,744	-		HMPREF1078_RS00615	0.25	-0.4
137,790	+		HMPREF1078_RS00615	0.29	-1.3
137,791	-		HMPREF1078_RS00615	0.29	-2.0
137,799	-		HMPREF1078_RS00615	0.30	-1.1
137,800	+		HMPREF1078_RS00615	0.30	+0.8
137,801	-		HMPREF1078_RS00615	0.30	+3.6
137,801	-		HMPREF1078_RS00615	0.30	-1.9
137,801	-		HMPREF1078_RS00615	0.30	-2.2
137,850	+		HMPREF1078_RS00615	0.34	+1.3
137,951	-		HMPREF1078_RS00615	0.43	-1.5
137,970	+		HMPREF1078_RS00615	0.44	+0.4
137,970	+		HMPREF1078_RS00615	0.44	-0.0
137,971	-		HMPREF1078_RS00615	0.44	-0.5
137,985	+		HMPREF1078_RS00615	0.46	+1.5
138,070	-		HMPREF1078_RS00615	0.53	-0.0
138,070	-		HMPREF1078_RS00615	0.53	+0.3
138,073	+		HMPREF1078_RS00615	0.53	-1.3
138,073	+		HMPREF1078_RS00615	0.53	+0.1
138,074	-		HMPREF1078_RS00615	0.53	+0.3
138,074	-		HMPREF1078_RS00615	0.53	-0.2
138,077	-		HMPREF1078_RS00615	0.53	-0.6
138,155	+		HMPREF1078_RS00615	0.60	-2.0
138,155	+		HMPREF1078_RS00615	0.60	+0.2
138,155	+		HMPREF1078_RS00615	0.60	-1.5
138,156	-		HMPREF1078_RS00615	0.60	+0.6
138,158	-		HMPREF1078_RS00615	0.60	+0.3
138,161	-		HMPREF1078_RS00615	0.61	-0.8
138,235	+		HMPREF1078_RS00615	0.67	-0.2
138,235	+		HMPREF1078_RS00615	0.67	+0.4
138,236	-		HMPREF1078_RS00615	0.67	-1.0
138,236	-		HMPREF1078_RS00615	0.67	+0.7
138,254	-		HMPREF1078_RS00615	0.68	+0.2
138,267	+		HMPREF1078_RS00615	0.70	+0.6
138,267	+		HMPREF1078_RS00615	0.70	-0.0
138,296	+		HMPREF1078_RS00615	0.72	-0.3
138,300	+		HMPREF1078_RS00615	0.72	+0.1
138,348	+		HMPREF1078_RS00615	0.76	-0.4
138,348	+		HMPREF1078_RS00615	0.76	+2.6
138,348	+		HMPREF1078_RS00615	0.76	-0.0
138,348	+		HMPREF1078_RS00615	0.76	+0.1
138,348	+		HMPREF1078_RS00615	0.76	+0.3
138,349	-		HMPREF1078_RS00615	0.77	-0.1
138,349	-		HMPREF1078_RS00615	0.77	+2.0
138,349	-		HMPREF1078_RS00615	0.77	+0.6
138,349	-		HMPREF1078_RS00615	0.77	-0.3
138,349	-		HMPREF1078_RS00615	0.77	-1.0
138,349	-		HMPREF1078_RS00615	0.77	-1.6
138,349	-		HMPREF1078_RS00615	0.77	-0.2
138,373	-		HMPREF1078_RS00615	0.79	-1.3
138,414	+		HMPREF1078_RS00615	0.82	-0.7
138,415	-		HMPREF1078_RS00615	0.82	-0.6
138,419	+		HMPREF1078_RS00615	0.82	+0.3
138,446	+		HMPREF1078_RS00615	0.85	-1.0
138,446	+		HMPREF1078_RS00615	0.85	-2.8
138,446	+		HMPREF1078_RS00615	0.85	+0.3
138,472	+		HMPREF1078_RS00615	0.87	-0.0
138,546	+				-2.0
138,547	-				-0.3
138,588	+				-0.2
138,598	-				+1.0
138,610	+				-0.0
138,613	-				+0.8
138,613	-				-0.3
138,623	-				-0.8
138,623	-				-0.2
138,642	+				-0.1
138,653	+				-0.2
138,664	-				+0.5
138,713	+				+0.7
138,714	-				+0.5
138,715	+				-0.9
138,716	-				-0.3
138,719	+				-0.4
138,719	+				-0.0
138,782	+				+0.3
138,805	+				+0.6
138,814	+				-0.3
138,814	+				+0.6
138,814	+				+0.8
138,814	+				-2.0
138,815	-				+0.4
138,873	+				-0.6
138,900	-				+0.3
138,916	+				+2.8
138,917	-				-0.0
138,934	-				+1.2
138,934	-				-2.6
138,939	-				+0.4
138,940	+				-0.6
138,941	-				-0.5
138,949	+				-1.3
138,949	+				+3.8
138,949	+				-2.2
138,950	-				-1.8
138,953	+				-0.0
138,953	+				-0.6
138,953	+				+1.0
138,954	-				-1.8
138,954	-				+1.8
138,954	-				-0.3
138,954	-				+0.4
138,954	-				+0.1
138,954	-				+2.6
138,954	-				-0.2
138,956	+				-0.7
138,957	-				+1.7
138,959	+				-1.6
138,972	+				-1.0
138,972	+				+1.3
138,972	+				-0.2
138,972	+				+0.8
138,973	-				+0.1
138,973	-				-0.9
138,974	+				-0.3
138,974	+				-0.8
138,974	+				-0.8
138,974	+				-0.3
138,974	+				-0.6
138,975	-				+0.2
138,975	-				-0.0
138,975	-				+0.2
138,975	-				-1.2
138,976	+				-0.8
138,982	+				-0.8
138,983	-				-1.1
138,995	+				-0.6
138,996	-				+1.4
138,999	+				-1.5
139,000	-				-0.0
139,000	-				+1.0
139,002	+				-0.8
139,003	-				+0.7
139,005	+				-0.5
139,006	-				-1.8
139,006	-				-0.4
139,009	+				+0.8
139,009	+				+1.2
139,010	-				-1.0
139,010	-				+0.7
139,010	-				-2.0
139,019	-				+1.4
139,019	-				+1.7
139,022	+				-2.0
139,022	+				-1.3
139,022	+				-0.4
139,022	+				-0.2
139,044	+				+2.0
139,045	-				+0.4
139,049	+				+0.8
139,050	-				-0.3
139,061	+				+1.0
139,083	+				-0.6
139,105	+				-0.7
139,160	+				+1.0
139,160	+				-0.7
139,163	+				+0.8
139,198	-				+1.6
139,203	+				-0.2
139,204	-				+1.2
139,204	-				+0.3
139,230	-				-0.4
139,251	+				+1.0
139,252	-				+2.0
139,252	-				-2.2
139,254	+				+1.3
139,255	-				+1.0
139,256	+				-0.9
139,256	+				+0.4
139,260	+				-0.4
139,264	-				-0.7
139,264	-				+0.8
139,270	+				+0.2
139,287	+				-1.8
139,290	-				-2.5
139,305	+				-1.0
139,306	-				+1.0
139,358	+				+0.5
139,363	+				+1.0
139,363	+				+0.2
139,364	-				-1.8
139,373	+		HMPREF1078_RS00620	0.10	+0.8
139,431	+		HMPREF1078_RS00620	0.16	-1.3
139,431	+		HMPREF1078_RS00620	0.16	+1.8
139,431	+		HMPREF1078_RS00620	0.16	+0.5
139,431	+		HMPREF1078_RS00620	0.16	+0.2
139,431	+		HMPREF1078_RS00620	0.16	-0.6
139,431	+		HMPREF1078_RS00620	0.16	+1.0
139,431	+		HMPREF1078_RS00620	0.16	-0.0
139,432	-		HMPREF1078_RS00620	0.16	+0.3
139,432	-		HMPREF1078_RS00620	0.16	-0.0
139,433	+		HMPREF1078_RS00620	0.16	-0.3
139,434	-		HMPREF1078_RS00620	0.16	+1.1
139,434	-		HMPREF1078_RS00620	0.16	-0.2
139,436	+		HMPREF1078_RS00620	0.17	-0.4
139,436	+		HMPREF1078_RS00620	0.17	+3.6
139,449	-		HMPREF1078_RS00620	0.18	+0.7
139,483	+		HMPREF1078_RS00620	0.22	-0.4
139,491	-		HMPREF1078_RS00620	0.22	-1.6
139,527	+		HMPREF1078_RS00620	0.26	+0.2
139,527	+		HMPREF1078_RS00620	0.26	-1.9
139,527	+		HMPREF1078_RS00620	0.26	-0.0
139,528	-		HMPREF1078_RS00620	0.26	+0.8
139,528	-		HMPREF1078_RS00620	0.26	-1.6
139,546	+		HMPREF1078_RS00620	0.28	-2.0
139,547	-		HMPREF1078_RS00620	0.28	+0.7
139,547	-		HMPREF1078_RS00620	0.28	-0.0
139,564	-		HMPREF1078_RS00620	0.30	-1.0
139,578	+		HMPREF1078_RS00620	0.31	+0.2
139,578	+		HMPREF1078_RS00620	0.31	+1.7
139,578	+		HMPREF1078_RS00620	0.31	+1.4