Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00215

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00210 and HMPREF1078_RS00215 are separated by 24 nucleotidesHMPREF1078_RS00215 and HMPREF1078_RS00220 are separated by 137 nucleotides HMPREF1078_RS00210: HMPREF1078_RS00210 - acyl-CoA carboxylase subunit beta, at 48,258 to 49,805 _RS00210 HMPREF1078_RS00215: HMPREF1078_RS00215 - biotin/lipoyl-binding protein, at 49,830 to 50,162 _RS00215 HMPREF1078_RS00220: HMPREF1078_RS00220 - tetratricopeptide repeat protein, at 50,300 to 52,423 _RS00220 Position (kb) 49 50 51Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 48.843 kb on - strand, within HMPREF1078_RS00210at 48.843 kb on - strand, within HMPREF1078_RS00210at 48.843 kb on - strand, within HMPREF1078_RS00210at 48.888 kb on - strand, within HMPREF1078_RS00210at 49.033 kb on + strand, within HMPREF1078_RS00210at 49.113 kb on - strand, within HMPREF1078_RS00210at 49.230 kb on - strand, within HMPREF1078_RS00210at 49.255 kb on + strand, within HMPREF1078_RS00210at 49.322 kb on + strand, within HMPREF1078_RS00210at 49.322 kb on + strand, within HMPREF1078_RS00210at 49.340 kb on + strand, within HMPREF1078_RS00210at 49.340 kb on + strand, within HMPREF1078_RS00210at 49.341 kb on - strand, within HMPREF1078_RS00210at 49.410 kb on + strand, within HMPREF1078_RS00210at 49.442 kb on + strand, within HMPREF1078_RS00210at 49.641 kb on + strand, within HMPREF1078_RS00210at 49.642 kb on - strand, within HMPREF1078_RS00210at 49.803 kb on + strandat 49.857 kb on + strandat 49.888 kb on - strand, within HMPREF1078_RS00215at 49.935 kb on - strand, within HMPREF1078_RS00215at 49.994 kb on - strand, within HMPREF1078_RS00215at 50.055 kb on + strand, within HMPREF1078_RS00215at 50.055 kb on + strand, within HMPREF1078_RS00215at 50.055 kb on + strand, within HMPREF1078_RS00215at 50.104 kb on + strand, within HMPREF1078_RS00215at 50.117 kb on + strand, within HMPREF1078_RS00215at 50.117 kb on + strand, within HMPREF1078_RS00215at 50.118 kb on - strand, within HMPREF1078_RS00215at 50.160 kb on + strandat 50.161 kb on - strandat 50.161 kb on - strandat 50.174 kb on - strandat 50.182 kb on - strandat 50.182 kb on - strandat 50.205 kb on - strandat 50.205 kb on - strandat 50.228 kb on + strandat 50.229 kb on - strandat 50.246 kb on + strandat 50.247 kb on - strandat 50.253 kb on - strandat 50.256 kb on + strandat 50.257 kb on - strandat 50.286 kb on + strandat 50.286 kb on + strandat 50.292 kb on + strandat 50.294 kb on + strandat 50.297 kb on + strandat 50.298 kb on - strandat 50.298 kb on - strandat 50.319 kb on + strandat 50.323 kb on + strandat 50.324 kb on - strandat 50.326 kb on - strandat 50.402 kb on + strandat 50.403 kb on - strandat 50.414 kb on + strandat 50.414 kb on + strandat 50.415 kb on - strandat 50.433 kb on - strandat 50.477 kb on + strandat 50.478 kb on - strandat 50.483 kb on + strandat 50.516 kb on + strand, within HMPREF1078_RS00220at 50.516 kb on + strand, within HMPREF1078_RS00220at 50.517 kb on - strand, within HMPREF1078_RS00220at 50.518 kb on + strand, within HMPREF1078_RS00220at 50.518 kb on + strand, within HMPREF1078_RS00220at 50.519 kb on - strand, within HMPREF1078_RS00220at 50.539 kb on + strand, within HMPREF1078_RS00220at 50.539 kb on + strand, within HMPREF1078_RS00220at 50.540 kb on - strand, within HMPREF1078_RS00220at 50.540 kb on - strand, within HMPREF1078_RS00220at 50.579 kb on + strand, within HMPREF1078_RS00220at 50.579 kb on + strand, within HMPREF1078_RS00220at 50.579 kb on + strand, within HMPREF1078_RS00220at 50.582 kb on + strand, within HMPREF1078_RS00220at 50.583 kb on - strand, within HMPREF1078_RS00220at 50.583 kb on - strand, within HMPREF1078_RS00220at 50.583 kb on - strand, within HMPREF1078_RS00220at 50.631 kb on + strand, within HMPREF1078_RS00220at 50.631 kb on + strand, within HMPREF1078_RS00220at 50.640 kb on - strand, within HMPREF1078_RS00220at 50.640 kb on - strand, within HMPREF1078_RS00220at 50.772 kb on - strand, within HMPREF1078_RS00220at 50.776 kb on + strand, within HMPREF1078_RS00220at 50.776 kb on + strand, within HMPREF1078_RS00220at 50.777 kb on - strand, within HMPREF1078_RS00220at 50.777 kb on - strand, within HMPREF1078_RS00220at 50.783 kb on + strand, within HMPREF1078_RS00220at 50.784 kb on - strand, within HMPREF1078_RS00220at 50.784 kb on - strand, within HMPREF1078_RS00220at 50.804 kb on + strand, within HMPREF1078_RS00220at 50.804 kb on + strand, within HMPREF1078_RS00220at 50.849 kb on - strand, within HMPREF1078_RS00220at 50.849 kb on - strand, within HMPREF1078_RS00220at 50.849 kb on - strand, within HMPREF1078_RS00220at 50.871 kb on - strand, within HMPREF1078_RS00220at 50.873 kb on + strand, within HMPREF1078_RS00220at 50.873 kb on + strand, within HMPREF1078_RS00220at 50.874 kb on - strand, within HMPREF1078_RS00220at 50.874 kb on - strand, within HMPREF1078_RS00220at 50.885 kb on + strand, within HMPREF1078_RS00220at 50.987 kb on + strand, within HMPREF1078_RS00220at 50.988 kb on - strand, within HMPREF1078_RS00220at 50.988 kb on - strand, within HMPREF1078_RS00220at 50.988 kb on - strand, within HMPREF1078_RS00220at 50.995 kb on + strand, within HMPREF1078_RS00220at 50.996 kb on - strand, within HMPREF1078_RS00220at 50.996 kb on - strand, within HMPREF1078_RS00220at 51.038 kb on - strand, within HMPREF1078_RS00220at 51.038 kb on - strand, within HMPREF1078_RS00220at 51.048 kb on - strand, within HMPREF1078_RS00220

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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48,843 - HMPREF1078_RS00210 0.38 -2.3
48,843 - HMPREF1078_RS00210 0.38 -0.6
48,843 - HMPREF1078_RS00210 0.38 +1.0
48,888 - HMPREF1078_RS00210 0.41 +1.0
49,033 + HMPREF1078_RS00210 0.50 -1.0
49,113 - HMPREF1078_RS00210 0.55 -0.0
49,230 - HMPREF1078_RS00210 0.63 +1.0
49,255 + HMPREF1078_RS00210 0.64 -0.6
49,322 + HMPREF1078_RS00210 0.69 -1.0
49,322 + HMPREF1078_RS00210 0.69 -0.0
49,340 + HMPREF1078_RS00210 0.70 -1.6
49,340 + HMPREF1078_RS00210 0.70 +1.0
49,341 - HMPREF1078_RS00210 0.70 -1.0
49,410 + HMPREF1078_RS00210 0.74 -0.0
49,442 + HMPREF1078_RS00210 0.76 -1.6
49,641 + HMPREF1078_RS00210 0.89 +1.0
49,642 - HMPREF1078_RS00210 0.89 -0.6
49,803 + -1.3
49,857 + +1.0
49,888 - HMPREF1078_RS00215 0.17 -0.6
49,935 - HMPREF1078_RS00215 0.32 -1.6
49,994 - HMPREF1078_RS00215 0.49 -0.0
50,055 + HMPREF1078_RS00215 0.68 -1.0
50,055 + HMPREF1078_RS00215 0.68 -1.3
50,055 + HMPREF1078_RS00215 0.68 -0.0
50,104 + HMPREF1078_RS00215 0.82 +1.0
50,117 + HMPREF1078_RS00215 0.86 -0.6
50,117 + HMPREF1078_RS00215 0.86 -1.0
50,118 - HMPREF1078_RS00215 0.86 +1.0
50,160 + -0.6
50,161 - -1.0
50,161 - -2.3
50,174 - -2.8
50,182 - +1.2
50,182 - -1.3
50,205 - -0.6
50,205 - -2.5
50,228 + -1.9
50,229 - +0.6
50,246 + +1.0
50,247 - -1.4
50,253 - -0.6
50,256 + -1.1
50,257 - -2.0
50,286 + -3.1
50,286 + -0.3
50,292 + -1.3
50,294 + +0.5
50,297 + +0.1
50,298 - +1.5
50,298 - -1.2
50,319 + -1.1
50,323 + -0.6
50,324 - -0.6
50,326 - -0.6
50,402 + +0.1
50,403 - -2.3
50,414 + -4.6
50,414 + +0.1
50,415 - -1.8
50,433 - +0.2
50,477 + -2.5
50,478 - -0.0
50,483 + -1.7
50,516 + HMPREF1078_RS00220 0.10 -0.5
50,516 + HMPREF1078_RS00220 0.10 -0.8
50,517 - HMPREF1078_RS00220 0.10 -2.5
50,518 + HMPREF1078_RS00220 0.10 +1.2
50,518 + HMPREF1078_RS00220 0.10 -1.8
50,519 - HMPREF1078_RS00220 0.10 +0.5
50,539 + HMPREF1078_RS00220 0.11 -1.5
50,539 + HMPREF1078_RS00220 0.11 -0.8
50,540 - HMPREF1078_RS00220 0.11 +0.4
50,540 - HMPREF1078_RS00220 0.11 -0.6
50,579 + HMPREF1078_RS00220 0.13 -3.2
50,579 + HMPREF1078_RS00220 0.13 -1.3
50,579 + HMPREF1078_RS00220 0.13 -0.6
50,582 + HMPREF1078_RS00220 0.13 -1.7
50,583 - HMPREF1078_RS00220 0.13 -0.5
50,583 - HMPREF1078_RS00220 0.13 -1.1
50,583 - HMPREF1078_RS00220 0.13 -0.2
50,631 + HMPREF1078_RS00220 0.16 -2.3
50,631 + HMPREF1078_RS00220 0.16 -1.4
50,640 - HMPREF1078_RS00220 0.16 -0.4
50,640 - HMPREF1078_RS00220 0.16 -2.2
50,772 - HMPREF1078_RS00220 0.22 +0.0
50,776 + HMPREF1078_RS00220 0.22 -3.7
50,776 + HMPREF1078_RS00220 0.22 +0.3
50,777 - HMPREF1078_RS00220 0.22 +1.0
50,777 - HMPREF1078_RS00220 0.22 -2.1
50,783 + HMPREF1078_RS00220 0.23 -1.0
50,784 - HMPREF1078_RS00220 0.23 -0.0
50,784 - HMPREF1078_RS00220 0.23 +0.8
50,804 + HMPREF1078_RS00220 0.24 +1.0
50,804 + HMPREF1078_RS00220 0.24 -2.7
50,849 - HMPREF1078_RS00220 0.26 +0.1
50,849 - HMPREF1078_RS00220 0.26 -1.8
50,849 - HMPREF1078_RS00220 0.26 -2.1
50,871 - HMPREF1078_RS00220 0.27 -3.7
50,873 + HMPREF1078_RS00220 0.27 +0.2
50,873 + HMPREF1078_RS00220 0.27 +0.1
50,874 - HMPREF1078_RS00220 0.27 -0.9
50,874 - HMPREF1078_RS00220 0.27 +1.4
50,885 + HMPREF1078_RS00220 0.28 -0.6
50,987 + HMPREF1078_RS00220 0.32 -1.3
50,988 - HMPREF1078_RS00220 0.32 -2.6
50,988 - HMPREF1078_RS00220 0.32 +1.0
50,988 - HMPREF1078_RS00220 0.32 -2.7
50,995 + HMPREF1078_RS00220 0.33 -0.0
50,996 - HMPREF1078_RS00220 0.33 -0.2
50,996 - HMPREF1078_RS00220 0.33 -0.1
51,038 - HMPREF1078_RS00220 0.35 +0.1
51,038 - HMPREF1078_RS00220 0.35 -0.2
51,048 - HMPREF1078_RS00220 0.35 -0.3

Or see this region's nucleotide sequence