Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00025

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00015 and HMPREF1078_RS00020 are separated by 120 nucleotidesHMPREF1078_RS00020 and HMPREF1078_RS00025 overlap by 4 nucleotidesHMPREF1078_RS00025 and HMPREF1078_RS00030 overlap by 8 nucleotidesHMPREF1078_RS00030 and HMPREF1078_RS00035 are separated by 23 nucleotides HMPREF1078_RS00015: HMPREF1078_RS00015 - efflux transporter outer membrane subunit, at 4,711 to 6,081 _RS00015 HMPREF1078_RS00020: HMPREF1078_RS00020 - nitroreductase family protein, at 6,202 to 6,762 _RS00020 HMPREF1078_RS00025: HMPREF1078_RS00025 - Rossmann-like and DUF2520 domain-containing protein, at 6,759 to 7,526 _RS00025 HMPREF1078_RS00030: HMPREF1078_RS00030 - HAD-IIIA family hydrolase, at 7,519 to 8,040 _RS00030 HMPREF1078_RS00035: HMPREF1078_RS00035 - Maf-like protein, at 8,064 to 8,654 _RS00035 Position (kb) 6 7 8Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5.777 kb on - strand, within HMPREF1078_RS00015at 5.791 kb on + strand, within HMPREF1078_RS00015at 5.791 kb on + strand, within HMPREF1078_RS00015at 5.792 kb on - strand, within HMPREF1078_RS00015at 5.793 kb on + strand, within HMPREF1078_RS00015at 5.793 kb on + strand, within HMPREF1078_RS00015at 5.793 kb on + strand, within HMPREF1078_RS00015at 5.823 kb on + strand, within HMPREF1078_RS00015at 5.824 kb on - strand, within HMPREF1078_RS00015at 5.881 kb on + strand, within HMPREF1078_RS00015at 5.882 kb on - strand, within HMPREF1078_RS00015at 5.907 kb on + strand, within HMPREF1078_RS00015at 5.908 kb on - strand, within HMPREF1078_RS00015at 5.911 kb on + strand, within HMPREF1078_RS00015at 5.911 kb on + strand, within HMPREF1078_RS00015at 5.911 kb on + strand, within HMPREF1078_RS00015at 5.911 kb on + strand, within HMPREF1078_RS00015at 5.911 kb on + strand, within HMPREF1078_RS00015at 5.911 kb on + strand, within HMPREF1078_RS00015at 5.912 kb on - strand, within HMPREF1078_RS00015at 5.912 kb on - strand, within HMPREF1078_RS00015at 5.912 kb on - strand, within HMPREF1078_RS00015at 5.912 kb on - strand, within HMPREF1078_RS00015at 5.912 kb on - strand, within HMPREF1078_RS00015at 5.931 kb on - strand, within HMPREF1078_RS00015at 5.935 kb on + strand, within HMPREF1078_RS00015at 5.953 kb on - strandat 5.956 kb on + strandat 5.956 kb on + strandat 5.956 kb on + strandat 5.956 kb on + strandat 5.957 kb on - strandat 5.957 kb on - strandat 5.957 kb on - strandat 5.957 kb on - strandat 5.957 kb on - strandat 5.957 kb on - strandat 5.959 kb on - strandat 6.046 kb on + strandat 6.047 kb on - strandat 6.052 kb on + strandat 6.160 kb on + strandat 6.161 kb on - strandat 6.188 kb on - strandat 6.221 kb on + strandat 6.221 kb on + strandat 6.290 kb on + strand, within HMPREF1078_RS00020at 6.365 kb on - strand, within HMPREF1078_RS00020at 6.386 kb on + strand, within HMPREF1078_RS00020at 6.387 kb on - strand, within HMPREF1078_RS00020at 6.440 kb on + strand, within HMPREF1078_RS00020at 6.452 kb on + strand, within HMPREF1078_RS00020at 6.473 kb on + strand, within HMPREF1078_RS00020at 6.473 kb on + strand, within HMPREF1078_RS00020at 6.499 kb on + strand, within HMPREF1078_RS00020at 6.499 kb on + strand, within HMPREF1078_RS00020at 6.499 kb on + strand, within HMPREF1078_RS00020at 6.500 kb on - strand, within HMPREF1078_RS00020at 6.500 kb on - strand, within HMPREF1078_RS00020at 6.501 kb on + strand, within HMPREF1078_RS00020at 6.502 kb on - strand, within HMPREF1078_RS00020at 6.592 kb on + strand, within HMPREF1078_RS00020at 6.615 kb on - strand, within HMPREF1078_RS00020at 6.615 kb on - strand, within HMPREF1078_RS00020at 6.619 kb on + strand, within HMPREF1078_RS00020at 6.657 kb on + strand, within HMPREF1078_RS00020at 6.658 kb on - strand, within HMPREF1078_RS00020at 6.658 kb on - strand, within HMPREF1078_RS00020at 6.658 kb on - strand, within HMPREF1078_RS00020at 6.658 kb on - strand, within HMPREF1078_RS00020at 6.672 kb on + strand, within HMPREF1078_RS00020at 6.672 kb on + strand, within HMPREF1078_RS00020at 6.673 kb on - strand, within HMPREF1078_RS00020at 6.673 kb on - strand, within HMPREF1078_RS00020at 6.711 kb on - strandat 6.711 kb on - strandat 6.846 kb on + strand, within HMPREF1078_RS00025at 6.846 kb on + strand, within HMPREF1078_RS00025at 6.846 kb on + strand, within HMPREF1078_RS00025at 6.847 kb on - strand, within HMPREF1078_RS00025at 6.854 kb on + strand, within HMPREF1078_RS00025at 6.942 kb on + strand, within HMPREF1078_RS00025at 6.942 kb on + strand, within HMPREF1078_RS00025at 6.943 kb on - strand, within HMPREF1078_RS00025at 7.019 kb on + strand, within HMPREF1078_RS00025at 7.068 kb on + strand, within HMPREF1078_RS00025at 7.068 kb on + strand, within HMPREF1078_RS00025at 7.068 kb on + strand, within HMPREF1078_RS00025at 7.071 kb on - strand, within HMPREF1078_RS00025at 7.114 kb on + strand, within HMPREF1078_RS00025at 7.148 kb on + strand, within HMPREF1078_RS00025at 7.148 kb on + strand, within HMPREF1078_RS00025at 7.151 kb on + strand, within HMPREF1078_RS00025at 7.152 kb on - strand, within HMPREF1078_RS00025at 7.205 kb on + strand, within HMPREF1078_RS00025at 7.280 kb on + strand, within HMPREF1078_RS00025at 7.280 kb on + strand, within HMPREF1078_RS00025at 7.280 kb on + strand, within HMPREF1078_RS00025at 7.281 kb on - strand, within HMPREF1078_RS00025at 7.281 kb on - strand, within HMPREF1078_RS00025at 7.281 kb on - strand, within HMPREF1078_RS00025at 7.281 kb on - strand, within HMPREF1078_RS00025at 7.347 kb on - strand, within HMPREF1078_RS00025at 7.370 kb on - strand, within HMPREF1078_RS00025at 7.370 kb on - strand, within HMPREF1078_RS00025at 7.370 kb on - strand, within HMPREF1078_RS00025at 7.373 kb on + strand, within HMPREF1078_RS00025at 7.373 kb on + strand, within HMPREF1078_RS00025at 7.373 kb on + strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.433 kb on + strand, within HMPREF1078_RS00025at 7.437 kb on - strand, within HMPREF1078_RS00025at 7.448 kb on + strand, within HMPREF1078_RS00025at 7.502 kb on - strandat 7.502 kb on - strandat 7.502 kb on - strandat 7.505 kb on + strandat 7.506 kb on - strandat 7.524 kb on + strandat 7.525 kb on - strandat 7.527 kb on + strandat 7.527 kb on + strandat 7.527 kb on + strandat 7.527 kb on + strandat 7.528 kb on - strandat 7.528 kb on - strandat 7.545 kb on + strandat 7.546 kb on - strandat 7.551 kb on - strandat 7.595 kb on + strand, within HMPREF1078_RS00030at 7.623 kb on + strand, within HMPREF1078_RS00030at 7.623 kb on + strand, within HMPREF1078_RS00030at 7.624 kb on - strand, within HMPREF1078_RS00030at 7.651 kb on + strand, within HMPREF1078_RS00030at 7.681 kb on + strand, within HMPREF1078_RS00030at 7.689 kb on - strand, within HMPREF1078_RS00030at 7.709 kb on - strand, within HMPREF1078_RS00030at 7.755 kb on + strand, within HMPREF1078_RS00030at 7.755 kb on + strand, within HMPREF1078_RS00030at 7.755 kb on + strand, within HMPREF1078_RS00030at 7.755 kb on + strand, within HMPREF1078_RS00030at 7.756 kb on - strand, within HMPREF1078_RS00030at 7.756 kb on - strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.758 kb on - strand, within HMPREF1078_RS00030at 7.758 kb on - strand, within HMPREF1078_RS00030at 7.758 kb on - strand, within HMPREF1078_RS00030at 7.758 kb on - strand, within HMPREF1078_RS00030at 7.759 kb on + strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.761 kb on + strand, within HMPREF1078_RS00030at 7.761 kb on + strand, within HMPREF1078_RS00030at 7.762 kb on - strand, within HMPREF1078_RS00030at 7.762 kb on - strand, within HMPREF1078_RS00030at 7.762 kb on - strand, within HMPREF1078_RS00030at 7.762 kb on - strand, within HMPREF1078_RS00030at 7.765 kb on + strand, within HMPREF1078_RS00030at 7.833 kb on + strand, within HMPREF1078_RS00030at 7.837 kb on + strand, within HMPREF1078_RS00030at 7.838 kb on - strand, within HMPREF1078_RS00030at 7.852 kb on - strand, within HMPREF1078_RS00030at 7.936 kb on + strand, within HMPREF1078_RS00030at 7.936 kb on + strand, within HMPREF1078_RS00030at 7.937 kb on - strand, within HMPREF1078_RS00030at 8.038 kb on + strandat 8.039 kb on - strandat 8.039 kb on - strandat 8.045 kb on - strandat 8.074 kb on + strandat 8.075 kb on - strandat 8.167 kb on + strand, within HMPREF1078_RS00035at 8.186 kb on - strand, within HMPREF1078_RS00035at 8.232 kb on + strand, within HMPREF1078_RS00035at 8.233 kb on - strand, within HMPREF1078_RS00035at 8.233 kb on - strand, within HMPREF1078_RS00035at 8.234 kb on + strand, within HMPREF1078_RS00035at 8.259 kb on + strand, within HMPREF1078_RS00035at 8.259 kb on + strand, within HMPREF1078_RS00035at 8.259 kb on + strand, within HMPREF1078_RS00035at 8.260 kb on - strand, within HMPREF1078_RS00035at 8.260 kb on - strand, within HMPREF1078_RS00035at 8.392 kb on + strand, within HMPREF1078_RS00035at 8.392 kb on + strand, within HMPREF1078_RS00035at 8.421 kb on - strand, within HMPREF1078_RS00035at 8.502 kb on + strand, within HMPREF1078_RS00035at 8.502 kb on + strand, within HMPREF1078_RS00035at 8.514 kb on + strand, within HMPREF1078_RS00035at 8.515 kb on - strand, within HMPREF1078_RS00035

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
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5,777 - HMPREF1078_RS00015 0.78 +2.0
5,791 + HMPREF1078_RS00015 0.79 +1.1
5,791 + HMPREF1078_RS00015 0.79 +0.1
5,792 - HMPREF1078_RS00015 0.79 +2.0
5,793 + HMPREF1078_RS00015 0.79 -1.0
5,793 + HMPREF1078_RS00015 0.79 -1.7
5,793 + HMPREF1078_RS00015 0.79 +0.1
5,823 + HMPREF1078_RS00015 0.81 +1.7
5,824 - HMPREF1078_RS00015 0.81 +0.3
5,881 + HMPREF1078_RS00015 0.85 -0.0
5,882 - HMPREF1078_RS00015 0.85 -0.6
5,907 + HMPREF1078_RS00015 0.87 +2.5
5,908 - HMPREF1078_RS00015 0.87 -1.4
5,911 + HMPREF1078_RS00015 0.88 +1.4
5,911 + HMPREF1078_RS00015 0.88 +1.4
5,911 + HMPREF1078_RS00015 0.88 +0.6
5,911 + HMPREF1078_RS00015 0.88 -1.9
5,911 + HMPREF1078_RS00015 0.88 -0.0
5,911 + HMPREF1078_RS00015 0.88 +0.3
5,912 - HMPREF1078_RS00015 0.88 +0.3
5,912 - HMPREF1078_RS00015 0.88 +2.0
5,912 - HMPREF1078_RS00015 0.88 -1.3
5,912 - HMPREF1078_RS00015 0.88 -0.8
5,912 - HMPREF1078_RS00015 0.88 -2.6
5,931 - HMPREF1078_RS00015 0.89 +2.0
5,935 + HMPREF1078_RS00015 0.89 -0.0
5,953 - -0.0
5,956 + +0.2
5,956 + -0.5
5,956 + +1.2
5,956 + +1.1
5,957 - -0.9
5,957 - +1.2
5,957 - -0.0
5,957 - -0.3
5,957 - -0.1
5,957 - -0.3
5,959 - +0.8
6,046 + +1.9
6,047 - -1.5
6,052 + -0.9
6,160 + +1.6
6,161 - +2.0
6,188 - -2.0
6,221 + +1.2
6,221 + +1.0
6,290 + HMPREF1078_RS00020 0.16 -0.9
6,365 - HMPREF1078_RS00020 0.29 +1.0
6,386 + HMPREF1078_RS00020 0.33 +0.3
6,387 - HMPREF1078_RS00020 0.33 -1.2
6,440 + HMPREF1078_RS00020 0.42 +1.2
6,452 + HMPREF1078_RS00020 0.45 -0.7
6,473 + HMPREF1078_RS00020 0.48 -1.0
6,473 + HMPREF1078_RS00020 0.48 -0.9
6,499 + HMPREF1078_RS00020 0.53 -0.4
6,499 + HMPREF1078_RS00020 0.53 +1.0
6,499 + HMPREF1078_RS00020 0.53 +2.0
6,500 - HMPREF1078_RS00020 0.53 +0.3
6,500 - HMPREF1078_RS00020 0.53 -1.0
6,501 + HMPREF1078_RS00020 0.53 +1.0
6,502 - HMPREF1078_RS00020 0.53 -1.3
6,592 + HMPREF1078_RS00020 0.70 -0.5
6,615 - HMPREF1078_RS00020 0.74 +0.8
6,615 - HMPREF1078_RS00020 0.74 -1.6
6,619 + HMPREF1078_RS00020 0.74 +0.6
6,657 + HMPREF1078_RS00020 0.81 -0.4
6,658 - HMPREF1078_RS00020 0.81 -0.6
6,658 - HMPREF1078_RS00020 0.81 -1.0
6,658 - HMPREF1078_RS00020 0.81 -2.2
6,658 - HMPREF1078_RS00020 0.81 -1.4
6,672 + HMPREF1078_RS00020 0.84 -1.0
6,672 + HMPREF1078_RS00020 0.84 +1.6
6,673 - HMPREF1078_RS00020 0.84 +0.5
6,673 - HMPREF1078_RS00020 0.84 -0.9
6,711 - -1.0
6,711 - -1.6
6,846 + HMPREF1078_RS00025 0.11 +0.4
6,846 + HMPREF1078_RS00025 0.11 -2.1
6,846 + HMPREF1078_RS00025 0.11 -1.5
6,847 - HMPREF1078_RS00025 0.11 -1.8
6,854 + HMPREF1078_RS00025 0.12 -0.5
6,942 + HMPREF1078_RS00025 0.24 -1.7
6,942 + HMPREF1078_RS00025 0.24 -1.6
6,943 - HMPREF1078_RS00025 0.24 -3.2
7,019 + HMPREF1078_RS00025 0.34 -1.3
7,068 + HMPREF1078_RS00025 0.40 -0.8
7,068 + HMPREF1078_RS00025 0.40 -0.0
7,068 + HMPREF1078_RS00025 0.40 -2.1
7,071 - HMPREF1078_RS00025 0.41 -0.0
7,114 + HMPREF1078_RS00025 0.46 -2.6
7,148 + HMPREF1078_RS00025 0.51 -2.2
7,148 + HMPREF1078_RS00025 0.51 +0.6
7,151 + HMPREF1078_RS00025 0.51 -2.6
7,152 - HMPREF1078_RS00025 0.51 -2.8
7,205 + HMPREF1078_RS00025 0.58 -2.0
7,280 + HMPREF1078_RS00025 0.68 -2.2
7,280 + HMPREF1078_RS00025 0.68 -1.6
7,280 + HMPREF1078_RS00025 0.68 -2.6
7,281 - HMPREF1078_RS00025 0.68 -1.0
7,281 - HMPREF1078_RS00025 0.68 -0.6
7,281 - HMPREF1078_RS00025 0.68 +1.0
7,281 - HMPREF1078_RS00025 0.68 -2.3
7,347 - HMPREF1078_RS00025 0.77 -1.0
7,370 - HMPREF1078_RS00025 0.80 +1.0
7,370 - HMPREF1078_RS00025 0.80 -2.0
7,370 - HMPREF1078_RS00025 0.80 -3.0
7,373 + HMPREF1078_RS00025 0.80 -1.9
7,373 + HMPREF1078_RS00025 0.80 -1.0
7,373 + HMPREF1078_RS00025 0.80 -0.0
7,374 - HMPREF1078_RS00025 0.80 -1.8
7,374 - HMPREF1078_RS00025 0.80 -3.9
7,374 - HMPREF1078_RS00025 0.80 -0.6
7,374 - HMPREF1078_RS00025 0.80 -1.6
7,374 - HMPREF1078_RS00025 0.80 -0.3
7,374 - HMPREF1078_RS00025 0.80 -0.0
7,374 - HMPREF1078_RS00025 0.80 -2.5
7,433 + HMPREF1078_RS00025 0.88 -1.8
7,437 - HMPREF1078_RS00025 0.88 -2.7
7,448 + HMPREF1078_RS00025 0.90 -1.9
7,502 - +1.0
7,502 - -0.6
7,502 - -2.6
7,505 + +1.2
7,506 - +1.0
7,524 + -1.8
7,525 - -0.5
7,527 + +0.4
7,527 + -1.0
7,527 + -1.3
7,527 + -2.2
7,528 - -2.3
7,528 - -3.9
7,545 + +1.0
7,546 - -1.0
7,551 - +0.4
7,595 + HMPREF1078_RS00030 0.15 -1.6
7,623 + HMPREF1078_RS00030 0.20 -2.2
7,623 + HMPREF1078_RS00030 0.20 -1.2
7,624 - HMPREF1078_RS00030 0.20 -0.2
7,651 + HMPREF1078_RS00030 0.25 -2.9
7,681 + HMPREF1078_RS00030 0.31 +1.0
7,689 - HMPREF1078_RS00030 0.33 -0.4
7,709 - HMPREF1078_RS00030 0.36 -1.3
7,755 + HMPREF1078_RS00030 0.45 -2.5
7,755 + HMPREF1078_RS00030 0.45 +1.4
7,755 + HMPREF1078_RS00030 0.45 -1.3
7,755 + HMPREF1078_RS00030 0.45 -0.6
7,756 - HMPREF1078_RS00030 0.45 -1.3
7,756 - HMPREF1078_RS00030 0.45 -2.2
7,757 + HMPREF1078_RS00030 0.46 +3.6
7,757 + HMPREF1078_RS00030 0.46 -1.0
7,757 + HMPREF1078_RS00030 0.46 -1.0
7,757 + HMPREF1078_RS00030 0.46 -3.7
7,757 + HMPREF1078_RS00030 0.46 -1.3
7,758 - HMPREF1078_RS00030 0.46 -0.0
7,758 - HMPREF1078_RS00030 0.46 -1.6
7,758 - HMPREF1078_RS00030 0.46 -2.2
7,758 - HMPREF1078_RS00030 0.46 -0.9
7,759 + HMPREF1078_RS00030 0.46 -0.0
7,760 - HMPREF1078_RS00030 0.46 +0.8
7,760 - HMPREF1078_RS00030 0.46 -1.8
7,760 - HMPREF1078_RS00030 0.46 -0.0
7,760 - HMPREF1078_RS00030 0.46 -0.6
7,760 - HMPREF1078_RS00030 0.46 -0.0
7,761 + HMPREF1078_RS00030 0.46 -1.0
7,761 + HMPREF1078_RS00030 0.46 -2.9
7,762 - HMPREF1078_RS00030 0.47 -1.5
7,762 - HMPREF1078_RS00030 0.47 +1.0
7,762 - HMPREF1078_RS00030 0.47 -1.8
7,762 - HMPREF1078_RS00030 0.47 -2.7
7,765 + HMPREF1078_RS00030 0.47 -1.5
7,833 + HMPREF1078_RS00030 0.60 +0.3
7,837 + HMPREF1078_RS00030 0.61 -0.0
7,838 - HMPREF1078_RS00030 0.61 -1.0
7,852 - HMPREF1078_RS00030 0.64 -2.5
7,936 + HMPREF1078_RS00030 0.80 -0.8
7,936 + HMPREF1078_RS00030 0.80 -2.3
7,937 - HMPREF1078_RS00030 0.80 -2.6
8,038 + -1.8
8,039 - +0.2
8,039 - -0.4
8,045 - -1.1
8,074 + -0.7
8,075 - -1.3
8,167 + HMPREF1078_RS00035 0.17 -0.6
8,186 - HMPREF1078_RS00035 0.21 +1.4
8,232 + HMPREF1078_RS00035 0.28 +0.2
8,233 - HMPREF1078_RS00035 0.29 -0.3
8,233 - HMPREF1078_RS00035 0.29 -1.0
8,234 + HMPREF1078_RS00035 0.29 -0.9
8,259 + HMPREF1078_RS00035 0.33 +1.0
8,259 + HMPREF1078_RS00035 0.33 -0.3
8,259 + HMPREF1078_RS00035 0.33 +0.4
8,260 - HMPREF1078_RS00035 0.33 -0.6
8,260 - HMPREF1078_RS00035 0.33 -1.3
8,392 + HMPREF1078_RS00035 0.55 -0.4
8,392 + HMPREF1078_RS00035 0.55 +0.1
8,421 - HMPREF1078_RS00035 0.60 -1.7
8,502 + HMPREF1078_RS00035 0.74 +2.1
8,502 + HMPREF1078_RS00035 0.74 +0.2
8,514 + HMPREF1078_RS00035 0.76 +1.5
8,515 - HMPREF1078_RS00035 0.76 -2.2

Or see this region's nucleotide sequence