Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02060 and HMPREF1078_RS02065 are separated by 63 nucleotides HMPREF1078_RS02065 and HMPREF1078_RS02070 are separated by 21 nucleotides
HMPREF1078_RS02060: HMPREF1078_RS02060 - T9SS type A sorting domain-containing protein, at 506,482 to 509,835
_RS02060
HMPREF1078_RS02065: HMPREF1078_RS02065 - MFS transporter, at 509,899 to 511,341
_RS02065
HMPREF1078_RS02070: HMPREF1078_RS02070 - folylpolyglutamate synthase/dihydrofolate synthase family protein, at 511,363 to 512,670
_RS02070
Position (kb) 509
510
511
512 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 509.004 kb on + strand, within HMPREF1078_RS02060 at 509.130 kb on + strand, within HMPREF1078_RS02060 at 509.130 kb on + strand, within HMPREF1078_RS02060 at 509.154 kb on + strand, within HMPREF1078_RS02060 at 509.155 kb on - strand, within HMPREF1078_RS02060 at 509.188 kb on - strand, within HMPREF1078_RS02060 at 509.297 kb on - strand, within HMPREF1078_RS02060 at 509.332 kb on - strand, within HMPREF1078_RS02060 at 509.344 kb on - strand, within HMPREF1078_RS02060 at 509.344 kb on - strand, within HMPREF1078_RS02060 at 509.347 kb on + strand, within HMPREF1078_RS02060 at 509.347 kb on + strand, within HMPREF1078_RS02060 at 509.347 kb on + strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.348 kb on - strand, within HMPREF1078_RS02060 at 509.368 kb on + strand, within HMPREF1078_RS02060 at 509.369 kb on - strand, within HMPREF1078_RS02060 at 509.371 kb on + strand, within HMPREF1078_RS02060 at 509.371 kb on + strand, within HMPREF1078_RS02060 at 509.372 kb on - strand, within HMPREF1078_RS02060 at 509.373 kb on + strand, within HMPREF1078_RS02060 at 509.447 kb on - strand, within HMPREF1078_RS02060 at 509.505 kb on - strand at 509.551 kb on + strand at 509.552 kb on - strand at 509.552 kb on - strand at 509.604 kb on - strand at 509.676 kb on + strand at 509.677 kb on - strand at 509.677 kb on - strand at 509.677 kb on - strand at 509.680 kb on + strand at 509.680 kb on + strand at 509.713 kb on - strand at 509.713 kb on - strand at 509.732 kb on - strand at 509.748 kb on - strand at 509.760 kb on + strand at 509.779 kb on - strand at 509.784 kb on + strand at 509.785 kb on - strand at 509.785 kb on - strand at 509.788 kb on + strand at 509.788 kb on + strand at 509.788 kb on + strand at 509.788 kb on + strand at 509.789 kb on - strand at 509.789 kb on - strand at 509.811 kb on + strand at 509.811 kb on + strand at 509.812 kb on - strand at 509.816 kb on - strand at 509.873 kb on - strand at 509.873 kb on - strand at 509.882 kb on + strand at 509.887 kb on - strand at 509.900 kb on + strand at 509.901 kb on - strand at 510.020 kb on - strand at 510.074 kb on + strand, within HMPREF1078_RS02065 at 510.084 kb on + strand, within HMPREF1078_RS02065 at 510.105 kb on + strand, within HMPREF1078_RS02065 at 510.111 kb on - strand, within HMPREF1078_RS02065 at 510.111 kb on - strand, within HMPREF1078_RS02065 at 510.134 kb on - strand, within HMPREF1078_RS02065 at 510.135 kb on + strand, within HMPREF1078_RS02065 at 510.137 kb on + strand, within HMPREF1078_RS02065 at 510.175 kb on + strand, within HMPREF1078_RS02065 at 510.185 kb on + strand, within HMPREF1078_RS02065 at 510.284 kb on - strand, within HMPREF1078_RS02065 at 510.337 kb on - strand, within HMPREF1078_RS02065 at 510.341 kb on - strand, within HMPREF1078_RS02065 at 510.348 kb on + strand, within HMPREF1078_RS02065 at 510.348 kb on + strand, within HMPREF1078_RS02065 at 510.349 kb on - strand, within HMPREF1078_RS02065 at 510.360 kb on + strand, within HMPREF1078_RS02065 at 510.395 kb on + strand, within HMPREF1078_RS02065 at 510.396 kb on - strand, within HMPREF1078_RS02065 at 510.419 kb on - strand, within HMPREF1078_RS02065 at 510.426 kb on + strand, within HMPREF1078_RS02065 at 510.426 kb on + strand, within HMPREF1078_RS02065 at 510.537 kb on - strand, within HMPREF1078_RS02065 at 510.561 kb on + strand, within HMPREF1078_RS02065 at 510.562 kb on - strand, within HMPREF1078_RS02065 at 510.563 kb on + strand, within HMPREF1078_RS02065 at 510.582 kb on + strand, within HMPREF1078_RS02065 at 510.583 kb on - strand, within HMPREF1078_RS02065 at 510.583 kb on - strand, within HMPREF1078_RS02065 at 510.585 kb on + strand, within HMPREF1078_RS02065 at 510.585 kb on + strand, within HMPREF1078_RS02065 at 510.585 kb on + strand, within HMPREF1078_RS02065 at 510.586 kb on - strand, within HMPREF1078_RS02065 at 510.586 kb on - strand, within HMPREF1078_RS02065 at 510.586 kb on - strand, within HMPREF1078_RS02065 at 510.597 kb on + strand, within HMPREF1078_RS02065 at 510.598 kb on - strand, within HMPREF1078_RS02065 at 510.598 kb on - strand, within HMPREF1078_RS02065 at 510.683 kb on - strand, within HMPREF1078_RS02065 at 510.700 kb on + strand, within HMPREF1078_RS02065 at 510.711 kb on + strand, within HMPREF1078_RS02065 at 510.793 kb on - strand, within HMPREF1078_RS02065 at 510.793 kb on - strand, within HMPREF1078_RS02065 at 510.793 kb on - strand, within HMPREF1078_RS02065 at 510.797 kb on - strand, within HMPREF1078_RS02065 at 510.797 kb on - strand, within HMPREF1078_RS02065 at 510.929 kb on + strand, within HMPREF1078_RS02065 at 510.930 kb on - strand, within HMPREF1078_RS02065 at 510.930 kb on - strand, within HMPREF1078_RS02065 at 511.009 kb on + strand, within HMPREF1078_RS02065 at 511.010 kb on - strand, within HMPREF1078_RS02065 at 511.010 kb on - strand, within HMPREF1078_RS02065 at 511.011 kb on + strand, within HMPREF1078_RS02065 at 511.039 kb on - strand, within HMPREF1078_RS02065 at 511.075 kb on + strand, within HMPREF1078_RS02065 at 511.091 kb on - strand, within HMPREF1078_RS02065 at 511.099 kb on - strand, within HMPREF1078_RS02065 at 511.210 kb on + strand at 511.210 kb on + strand at 511.210 kb on + strand at 511.213 kb on + strand at 511.213 kb on + strand at 511.213 kb on + strand at 511.213 kb on - strand at 511.344 kb on + strand at 511.359 kb on + strand at 511.360 kb on - strand at 511.360 kb on - strand at 511.364 kb on + strand at 511.364 kb on + strand at 511.365 kb on - strand at 511.365 kb on - strand at 511.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day2 remove 509,004 + HMPREF1078_RS02060 0.75 -2.2 509,130 + HMPREF1078_RS02060 0.79 -2.3 509,130 + HMPREF1078_RS02060 0.79 +0.7 509,154 + HMPREF1078_RS02060 0.80 +1.1 509,155 - HMPREF1078_RS02060 0.80 -0.5 509,188 - HMPREF1078_RS02060 0.81 +0.3 509,297 - HMPREF1078_RS02060 0.84 +0.3 509,332 - HMPREF1078_RS02060 0.85 +0.9 509,344 - HMPREF1078_RS02060 0.85 +0.5 509,344 - HMPREF1078_RS02060 0.85 -2.1 509,347 + HMPREF1078_RS02060 0.85 +1.7 509,347 + HMPREF1078_RS02060 0.85 -1.2 509,347 + HMPREF1078_RS02060 0.85 +3.0 509,348 - HMPREF1078_RS02060 0.85 -0.8 509,348 - HMPREF1078_RS02060 0.85 +0.6 509,348 - HMPREF1078_RS02060 0.85 -0.2 509,348 - HMPREF1078_RS02060 0.85 +0.3 509,348 - HMPREF1078_RS02060 0.85 -0.6 509,368 + HMPREF1078_RS02060 0.86 -0.2 509,369 - HMPREF1078_RS02060 0.86 +0.4 509,371 + HMPREF1078_RS02060 0.86 +0.0 509,371 + HMPREF1078_RS02060 0.86 -2.2 509,372 - HMPREF1078_RS02060 0.86 +0.1 509,373 + HMPREF1078_RS02060 0.86 +0.3 509,447 - HMPREF1078_RS02060 0.88 -1.4 509,505 - -0.1 509,551 + +0.4 509,552 - -0.4 509,552 - +0.2 509,604 - +0.0 509,676 + +1.0 509,677 - -1.0 509,677 - +1.1 509,677 - -1.0 509,680 + +0.9 509,680 + -0.4 509,713 - +0.7 509,713 - -2.1 509,732 - -1.0 509,748 - -0.8 509,760 + -0.6 509,779 - -0.1 509,784 + +1.4 509,785 - -0.1 509,785 - -0.8 509,788 + +0.4 509,788 + -1.8 509,788 + -0.3 509,788 + +1.0 509,789 - -2.0 509,789 - -1.6 509,811 + -0.7 509,811 + -1.0 509,812 - +1.3 509,816 - +1.5 509,873 - +1.2 509,873 - -0.1 509,882 + +1.4 509,887 - -1.5 509,900 + +1.0 509,901 - -0.4 510,020 - +1.6 510,074 + HMPREF1078_RS02065 0.12 +1.9 510,084 + HMPREF1078_RS02065 0.13 -0.8 510,105 + HMPREF1078_RS02065 0.14 -0.9 510,111 - HMPREF1078_RS02065 0.15 -2.2 510,111 - HMPREF1078_RS02065 0.15 +2.0 510,134 - HMPREF1078_RS02065 0.16 +0.2 510,135 + HMPREF1078_RS02065 0.16 -1.5 510,137 + HMPREF1078_RS02065 0.16 -0.7 510,175 + HMPREF1078_RS02065 0.19 -1.6 510,185 + HMPREF1078_RS02065 0.20 +2.6 510,284 - HMPREF1078_RS02065 0.27 +0.7 510,337 - HMPREF1078_RS02065 0.30 +0.9 510,341 - HMPREF1078_RS02065 0.31 -0.6 510,348 + HMPREF1078_RS02065 0.31 -0.6 510,348 + HMPREF1078_RS02065 0.31 +1.0 510,349 - HMPREF1078_RS02065 0.31 -0.9 510,360 + HMPREF1078_RS02065 0.32 +0.1 510,395 + HMPREF1078_RS02065 0.34 -0.2 510,396 - HMPREF1078_RS02065 0.34 +0.9 510,419 - HMPREF1078_RS02065 0.36 +2.0 510,426 + HMPREF1078_RS02065 0.37 +1.6 510,426 + HMPREF1078_RS02065 0.37 -0.7 510,537 - HMPREF1078_RS02065 0.44 +2.6 510,561 + HMPREF1078_RS02065 0.46 +0.1 510,562 - HMPREF1078_RS02065 0.46 -0.1 510,563 + HMPREF1078_RS02065 0.46 +1.6 510,582 + HMPREF1078_RS02065 0.47 -2.3 510,583 - HMPREF1078_RS02065 0.47 -1.6 510,583 - HMPREF1078_RS02065 0.47 -2.5 510,585 + HMPREF1078_RS02065 0.48 +1.5 510,585 + HMPREF1078_RS02065 0.48 -2.3 510,585 + HMPREF1078_RS02065 0.48 +0.5 510,586 - HMPREF1078_RS02065 0.48 +2.3 510,586 - HMPREF1078_RS02065 0.48 -3.2 510,586 - HMPREF1078_RS02065 0.48 +0.3 510,597 + HMPREF1078_RS02065 0.48 -0.4 510,598 - HMPREF1078_RS02065 0.48 -2.1 510,598 - HMPREF1078_RS02065 0.48 -0.2 510,683 - HMPREF1078_RS02065 0.54 -1.8 510,700 + HMPREF1078_RS02065 0.56 +0.1 510,711 + HMPREF1078_RS02065 0.56 -2.6 510,793 - HMPREF1078_RS02065 0.62 -0.2 510,793 - HMPREF1078_RS02065 0.62 -0.8 510,793 - HMPREF1078_RS02065 0.62 +0.2 510,797 - HMPREF1078_RS02065 0.62 -0.3 510,797 - HMPREF1078_RS02065 0.62 +0.1 510,929 + HMPREF1078_RS02065 0.71 +0.0 510,930 - HMPREF1078_RS02065 0.71 -0.5 510,930 - HMPREF1078_RS02065 0.71 -2.8 511,009 + HMPREF1078_RS02065 0.77 -2.8 511,010 - HMPREF1078_RS02065 0.77 -0.6 511,010 - HMPREF1078_RS02065 0.77 +0.0 511,011 + HMPREF1078_RS02065 0.77 +0.0 511,039 - HMPREF1078_RS02065 0.79 +1.0 511,075 + HMPREF1078_RS02065 0.81 -1.7 511,091 - HMPREF1078_RS02065 0.83 -1.5 511,099 - HMPREF1078_RS02065 0.83 -2.9 511,210 + -2.3 511,210 + +0.9 511,210 + -1.6 511,213 + -3.2 511,213 + -1.0 511,213 + -3.2 511,213 - +3.0 511,344 + -1.5 511,359 + -2.5 511,360 - -1.3 511,360 - +0.3 511,364 + -0.4 511,364 + +1.0 511,365 - -0.6 511,365 - +0.1 511,365 - +0.2
Or see this region's nucleotide sequence