Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05870

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05875 and HMPREF1058_RS05870 are separated by 16 nucleotidesHMPREF1058_RS05870 and HMPREF1058_RS05865 are separated by 69 nucleotides HMPREF1058_RS05875: HMPREF1058_RS05875 - DNA translocase FtsK, at 57,707 to 60,172 _RS05875 HMPREF1058_RS05870: HMPREF1058_RS05870 - outer-membrane lipoprotein carrier protein LolA, at 60,189 to 60,803 _RS05870 HMPREF1058_RS05865: HMPREF1058_RS05865 - thioredoxin-disulfide reductase, at 60,873 to 61,820 _RS05865 Position (kb) 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1at 60.170 kb on + strandat 60.170 kb on + strandat 60.400 kb on + strand, within HMPREF1058_RS05870at 60.790 kb on + strandat 60.790 kb on + strandat 60.796 kb on + strandat 60.796 kb on + strandat 60.828 kb on + strandat 60.831 kb on + strandat 60.853 kb on + strandat 60.939 kb on + strandat 61.255 kb on - strand, within HMPREF1058_RS05865at 61.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
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60,170 + -3.0
60,170 + -1.0
60,400 + HMPREF1058_RS05870 0.34 +0.6
60,790 + -1.8
60,790 + -1.9
60,796 + -1.5
60,796 + +0.6
60,828 + -1.8
60,831 + -1.2
60,853 + -0.3
60,939 + -1.4
61,255 - HMPREF1058_RS05865 0.40 +0.6
61,798 + +0.6

Or see this region's nucleotide sequence