Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03795 and HMPREF1058_RS03790 are separated by 48 nucleotides HMPREF1058_RS03790 and HMPREF1058_RS03785 are separated by 128 nucleotides HMPREF1058_RS03785 and HMPREF1058_RS03780 overlap by 29 nucleotides HMPREF1058_RS03780 and HMPREF1058_RS03775 are separated by 124 nucleotides
HMPREF1058_RS03795: HMPREF1058_RS03795 - MATE family efflux transporter, at 184,481 to 185,824
_RS03795
HMPREF1058_RS03790: HMPREF1058_RS03790 - OmpA family protein, at 185,873 to 186,592
_RS03790
HMPREF1058_RS03785: HMPREF1058_RS03785 - monofunctional biosynthetic peptidoglycan transglycosylase, at 186,721 to 187,443
_RS03785
HMPREF1058_RS03780: HMPREF1058_RS03780 - DUF1460 domain-containing protein, at 187,415 to 188,299
_RS03780
HMPREF1058_RS03775: HMPREF1058_RS03775 - biotin/lipoyl-binding protein, at 188,424 to 190,199
_RS03775
Position (kb) 186
187
188 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 185.841 kb on + strand at 185.841 kb on + strand at 185.854 kb on + strand at 185.855 kb on - strand at 185.899 kb on - strand at 185.911 kb on + strand at 185.912 kb on - strand at 185.944 kb on + strand at 185.945 kb on - strand, within HMPREF1058_RS03790 at 185.948 kb on - strand, within HMPREF1058_RS03790 at 186.025 kb on + strand, within HMPREF1058_RS03790 at 186.068 kb on - strand, within HMPREF1058_RS03790 at 186.161 kb on - strand, within HMPREF1058_RS03790 at 186.181 kb on - strand, within HMPREF1058_RS03790 at 186.276 kb on + strand, within HMPREF1058_RS03790 at 186.304 kb on - strand, within HMPREF1058_RS03790 at 186.312 kb on - strand, within HMPREF1058_RS03790 at 186.320 kb on - strand, within HMPREF1058_RS03790 at 186.410 kb on - strand, within HMPREF1058_RS03790 at 186.432 kb on + strand, within HMPREF1058_RS03790 at 186.433 kb on - strand, within HMPREF1058_RS03790 at 186.465 kb on + strand, within HMPREF1058_RS03790 at 186.487 kb on + strand, within HMPREF1058_RS03790 at 186.487 kb on + strand, within HMPREF1058_RS03790 at 186.534 kb on + strand at 186.535 kb on - strand at 186.535 kb on - strand at 186.536 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.542 kb on + strand at 186.542 kb on + strand at 186.610 kb on + strand at 186.611 kb on - strand at 186.662 kb on + strand at 186.807 kb on + strand, within HMPREF1058_RS03785 at 186.807 kb on + strand, within HMPREF1058_RS03785 at 186.875 kb on + strand, within HMPREF1058_RS03785 at 186.876 kb on - strand, within HMPREF1058_RS03785 at 186.900 kb on + strand, within HMPREF1058_RS03785 at 186.969 kb on + strand, within HMPREF1058_RS03785 at 186.992 kb on + strand, within HMPREF1058_RS03785 at 186.992 kb on + strand, within HMPREF1058_RS03785 at 187.203 kb on + strand, within HMPREF1058_RS03785 at 187.203 kb on + strand, within HMPREF1058_RS03785 at 187.207 kb on + strand, within HMPREF1058_RS03785 at 187.208 kb on - strand, within HMPREF1058_RS03785 at 187.223 kb on + strand, within HMPREF1058_RS03785 at 187.224 kb on - strand, within HMPREF1058_RS03785 at 187.336 kb on + strand, within HMPREF1058_RS03785 at 187.337 kb on - strand, within HMPREF1058_RS03785 at 187.345 kb on - strand, within HMPREF1058_RS03785 at 187.362 kb on - strand, within HMPREF1058_RS03785 at 187.362 kb on - strand, within HMPREF1058_RS03785 at 187.366 kb on + strand, within HMPREF1058_RS03785 at 187.407 kb on + strand at 187.407 kb on + strand at 187.408 kb on - strand at 187.502 kb on + strand at 187.601 kb on - strand, within HMPREF1058_RS03780 at 187.607 kb on - strand, within HMPREF1058_RS03780 at 187.609 kb on + strand, within HMPREF1058_RS03780 at 187.610 kb on - strand, within HMPREF1058_RS03780 at 187.610 kb on - strand, within HMPREF1058_RS03780 at 187.673 kb on - strand, within HMPREF1058_RS03780 at 187.680 kb on + strand, within HMPREF1058_RS03780 at 187.681 kb on - strand, within HMPREF1058_RS03780 at 187.784 kb on - strand, within HMPREF1058_RS03780 at 187.820 kb on + strand, within HMPREF1058_RS03780 at 187.832 kb on - strand, within HMPREF1058_RS03780 at 187.884 kb on + strand, within HMPREF1058_RS03780 at 187.903 kb on - strand, within HMPREF1058_RS03780 at 188.016 kb on - strand, within HMPREF1058_RS03780 at 188.023 kb on + strand, within HMPREF1058_RS03780 at 188.051 kb on + strand, within HMPREF1058_RS03780 at 188.052 kb on - strand, within HMPREF1058_RS03780 at 188.081 kb on - strand, within HMPREF1058_RS03780 at 188.131 kb on + strand, within HMPREF1058_RS03780 at 188.132 kb on - strand, within HMPREF1058_RS03780 at 188.132 kb on - strand, within HMPREF1058_RS03780 at 188.132 kb on - strand, within HMPREF1058_RS03780 at 188.138 kb on - strand, within HMPREF1058_RS03780 at 188.184 kb on - strand, within HMPREF1058_RS03780 at 188.186 kb on - strand, within HMPREF1058_RS03780 at 188.186 kb on - strand, within HMPREF1058_RS03780 at 188.223 kb on - strand at 188.267 kb on - strand at 188.312 kb on - strand at 188.319 kb on - strand at 188.408 kb on - strand at 188.408 kb on - strand at 188.408 kb on - strand at 188.410 kb on - strand at 188.411 kb on + strand at 188.411 kb on + strand at 188.411 kb on + strand at 188.412 kb on - strand at 188.412 kb on - strand at 188.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 remove 185,841 + -1.1 185,841 + +1.0 185,854 + +0.7 185,855 - +0.8 185,899 - -2.8 185,911 + -1.6 185,912 - +0.1 185,944 + -1.9 185,945 - HMPREF1058_RS03790 0.10 -1.3 185,948 - HMPREF1058_RS03790 0.10 -1.5 186,025 + HMPREF1058_RS03790 0.21 -1.3 186,068 - HMPREF1058_RS03790 0.27 -2.3 186,161 - HMPREF1058_RS03790 0.40 +2.1 186,181 - HMPREF1058_RS03790 0.43 -1.3 186,276 + HMPREF1058_RS03790 0.56 +0.0 186,304 - HMPREF1058_RS03790 0.60 +0.6 186,312 - HMPREF1058_RS03790 0.61 -4.4 186,320 - HMPREF1058_RS03790 0.62 +0.8 186,410 - HMPREF1058_RS03790 0.75 -0.7 186,432 + HMPREF1058_RS03790 0.78 +1.4 186,433 - HMPREF1058_RS03790 0.78 -2.9 186,465 + HMPREF1058_RS03790 0.82 -2.5 186,487 + HMPREF1058_RS03790 0.85 -0.4 186,487 + HMPREF1058_RS03790 0.85 -1.3 186,534 + -1.9 186,535 - -1.5 186,535 - -0.3 186,536 + +0.0 186,538 + -0.0 186,538 + +0.3 186,538 + +0.4 186,538 + +0.8 186,538 + -2.3 186,538 + +0.4 186,539 - +1.7 186,539 - -2.2 186,539 - -0.3 186,539 - -0.5 186,542 + +0.7 186,542 + +0.0 186,610 + +0.3 186,611 - +1.7 186,662 + -2.8 186,807 + HMPREF1058_RS03785 0.12 -3.3 186,807 + HMPREF1058_RS03785 0.12 -2.2 186,875 + HMPREF1058_RS03785 0.21 -0.1 186,876 - HMPREF1058_RS03785 0.21 -3.7 186,900 + HMPREF1058_RS03785 0.25 +0.2 186,969 + HMPREF1058_RS03785 0.34 -0.7 186,992 + HMPREF1058_RS03785 0.37 +0.9 186,992 + HMPREF1058_RS03785 0.37 -0.9 187,203 + HMPREF1058_RS03785 0.67 -0.0 187,203 + HMPREF1058_RS03785 0.67 +0.0 187,207 + HMPREF1058_RS03785 0.67 -0.8 187,208 - HMPREF1058_RS03785 0.67 -1.9 187,223 + HMPREF1058_RS03785 0.69 -0.2 187,224 - HMPREF1058_RS03785 0.70 -2.8 187,336 + HMPREF1058_RS03785 0.85 +0.0 187,337 - HMPREF1058_RS03785 0.85 +1.2 187,345 - HMPREF1058_RS03785 0.86 +0.0 187,362 - HMPREF1058_RS03785 0.89 -0.7 187,362 - HMPREF1058_RS03785 0.89 -1.0 187,366 + HMPREF1058_RS03785 0.89 +0.3 187,407 + +0.1 187,407 + +0.3 187,408 - -2.6 187,502 + -0.5 187,601 - HMPREF1058_RS03780 0.21 -2.6 187,607 - HMPREF1058_RS03780 0.22 -0.4 187,609 + HMPREF1058_RS03780 0.22 +1.0 187,610 - HMPREF1058_RS03780 0.22 +0.5 187,610 - HMPREF1058_RS03780 0.22 +2.3 187,673 - HMPREF1058_RS03780 0.29 -0.0 187,680 + HMPREF1058_RS03780 0.30 -2.2 187,681 - HMPREF1058_RS03780 0.30 +0.0 187,784 - HMPREF1058_RS03780 0.42 +1.0 187,820 + HMPREF1058_RS03780 0.46 -0.8 187,832 - HMPREF1058_RS03780 0.47 -0.0 187,884 + HMPREF1058_RS03780 0.53 +0.8 187,903 - HMPREF1058_RS03780 0.55 -0.9 188,016 - HMPREF1058_RS03780 0.68 +1.7 188,023 + HMPREF1058_RS03780 0.69 +0.2 188,051 + HMPREF1058_RS03780 0.72 -2.3 188,052 - HMPREF1058_RS03780 0.72 -0.3 188,081 - HMPREF1058_RS03780 0.75 -0.9 188,131 + HMPREF1058_RS03780 0.81 -0.3 188,132 - HMPREF1058_RS03780 0.81 +0.1 188,132 - HMPREF1058_RS03780 0.81 +0.3 188,132 - HMPREF1058_RS03780 0.81 +0.0 188,138 - HMPREF1058_RS03780 0.82 -2.1 188,184 - HMPREF1058_RS03780 0.87 -0.0 188,186 - HMPREF1058_RS03780 0.87 -1.9 188,186 - HMPREF1058_RS03780 0.87 +0.1 188,223 - +0.9 188,267 - -0.6 188,312 - +1.4 188,319 - +0.5 188,408 - +0.5 188,408 - -2.7 188,408 - +0.9 188,410 - -0.9 188,411 + -2.1 188,411 + -2.3 188,411 + +0.1 188,412 - +3.0 188,412 - +0.3 188,412 - -0.2
Or see this region's nucleotide sequence