Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05320 and HMPREF1058_RS05315 are separated by 242 nucleotides HMPREF1058_RS05315 and HMPREF1058_RS21350 are separated by 111 nucleotides HMPREF1058_RS21350 and HMPREF1058_RS21355 overlap by 28 nucleotides
HMPREF1058_RS05320: HMPREF1058_RS05320 - restriction endonuclease, at 190,790 to 191,644
_RS05320
HMPREF1058_RS05315: HMPREF1058_RS05315 - helix-turn-helix transcriptional regulator, at 191,887 to 192,063
_RS05315
HMPREF1058_RS21350: HMPREF1058_RS21350 - type I restriction-modification system subunit M N-terminal domain-containing protein, at 192,175 to 192,675
_RS21350
HMPREF1058_RS21355: HMPREF1058_RS21355 - mobilization protein, at 192,648 to 193,073
_RS21355
Position (kb) 191
192
193 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 190.968 kb on + strand, within HMPREF1058_RS05320 at 190.968 kb on + strand, within HMPREF1058_RS05320 at 190.968 kb on + strand, within HMPREF1058_RS05320 at 190.969 kb on - strand, within HMPREF1058_RS05320 at 190.969 kb on - strand, within HMPREF1058_RS05320 at 190.969 kb on - strand, within HMPREF1058_RS05320 at 190.969 kb on - strand, within HMPREF1058_RS05320 at 191.049 kb on - strand, within HMPREF1058_RS05320 at 191.059 kb on + strand, within HMPREF1058_RS05320 at 191.165 kb on - strand, within HMPREF1058_RS05320 at 191.165 kb on - strand, within HMPREF1058_RS05320 at 191.167 kb on - strand, within HMPREF1058_RS05320 at 191.167 kb on - strand, within HMPREF1058_RS05320 at 191.320 kb on - strand, within HMPREF1058_RS05320 at 191.379 kb on - strand, within HMPREF1058_RS05320 at 191.428 kb on + strand, within HMPREF1058_RS05320 at 191.444 kb on - strand, within HMPREF1058_RS05320 at 191.453 kb on - strand, within HMPREF1058_RS05320 at 191.510 kb on + strand, within HMPREF1058_RS05320 at 191.511 kb on - strand, within HMPREF1058_RS05320 at 191.511 kb on - strand, within HMPREF1058_RS05320 at 191.602 kb on - strand at 191.602 kb on - strand at 191.712 kb on + strand at 191.731 kb on + strand at 191.731 kb on + strand at 191.783 kb on - strand at 191.824 kb on - strand at 191.824 kb on - strand at 191.856 kb on - strand at 191.856 kb on - strand at 191.870 kb on + strand at 192.022 kb on - strand, within HMPREF1058_RS05315 at 192.075 kb on - strand at 192.075 kb on - strand at 192.075 kb on - strand at 192.075 kb on - strand at 192.078 kb on - strand at 192.078 kb on - strand at 192.082 kb on - strand at 192.157 kb on - strand at 192.262 kb on - strand, within HMPREF1058_RS21350 at 192.263 kb on + strand, within HMPREF1058_RS21350 at 192.264 kb on - strand, within HMPREF1058_RS21350 at 192.288 kb on - strand, within HMPREF1058_RS21350 at 192.357 kb on - strand, within HMPREF1058_RS21350 at 192.430 kb on + strand, within HMPREF1058_RS21350 at 192.542 kb on + strand, within HMPREF1058_RS21350 at 192.542 kb on + strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.598 kb on - strand, within HMPREF1058_RS21350 at 192.598 kb on - strand, within HMPREF1058_RS21350 at 192.673 kb on + strand at 192.674 kb on - strand at 192.678 kb on - strand at 192.678 kb on - strand at 192.678 kb on - strand at 192.702 kb on + strand, within HMPREF1058_RS21355 at 192.734 kb on - strand, within HMPREF1058_RS21355 at 192.734 kb on - strand, within HMPREF1058_RS21355 at 192.824 kb on + strand, within HMPREF1058_RS21355 at 192.840 kb on - strand, within HMPREF1058_RS21355 at 193.035 kb on + strand at 193.036 kb on - strand at 193.036 kb on - strand at 193.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 190,968 + HMPREF1058_RS05320 0.21 +0.2 190,968 + HMPREF1058_RS05320 0.21 -0.4 190,968 + HMPREF1058_RS05320 0.21 +0.4 190,969 - HMPREF1058_RS05320 0.21 -0.3 190,969 - HMPREF1058_RS05320 0.21 +0.3 190,969 - HMPREF1058_RS05320 0.21 -2.3 190,969 - HMPREF1058_RS05320 0.21 -0.1 191,049 - HMPREF1058_RS05320 0.30 -0.8 191,059 + HMPREF1058_RS05320 0.31 -0.1 191,165 - HMPREF1058_RS05320 0.44 +0.5 191,165 - HMPREF1058_RS05320 0.44 +1.4 191,167 - HMPREF1058_RS05320 0.44 -0.5 191,167 - HMPREF1058_RS05320 0.44 +1.4 191,320 - HMPREF1058_RS05320 0.62 -0.6 191,379 - HMPREF1058_RS05320 0.69 +0.3 191,428 + HMPREF1058_RS05320 0.75 -0.1 191,444 - HMPREF1058_RS05320 0.76 -1.3 191,453 - HMPREF1058_RS05320 0.78 +0.8 191,510 + HMPREF1058_RS05320 0.84 +0.5 191,511 - HMPREF1058_RS05320 0.84 +0.1 191,511 - HMPREF1058_RS05320 0.84 +0.6 191,602 - -4.0 191,602 - -0.3 191,712 + +0.3 191,731 + +0.4 191,731 + -0.2 191,783 - -0.0 191,824 - -0.1 191,824 - +0.8 191,856 - -0.9 191,856 - +0.4 191,870 + +2.1 192,022 - HMPREF1058_RS05315 0.76 +0.5 192,075 - +0.1 192,075 - -0.2 192,075 - -0.9 192,075 - -1.2 192,078 - -1.2 192,078 - -0.7 192,082 - -0.2 192,157 - -1.1 192,262 - HMPREF1058_RS21350 0.17 -0.6 192,263 + HMPREF1058_RS21350 0.18 +0.7 192,264 - HMPREF1058_RS21350 0.18 -0.1 192,288 - HMPREF1058_RS21350 0.23 +0.8 192,357 - HMPREF1058_RS21350 0.36 -0.3 192,430 + HMPREF1058_RS21350 0.51 +1.2 192,542 + HMPREF1058_RS21350 0.73 -0.2 192,542 + HMPREF1058_RS21350 0.73 -0.5 192,543 - HMPREF1058_RS21350 0.73 +1.3 192,543 - HMPREF1058_RS21350 0.73 -1.7 192,543 - HMPREF1058_RS21350 0.73 -0.3 192,543 - HMPREF1058_RS21350 0.73 -2.3 192,543 - HMPREF1058_RS21350 0.73 -0.1 192,598 - HMPREF1058_RS21350 0.84 +2.0 192,598 - HMPREF1058_RS21350 0.84 -0.3 192,673 + +1.5 192,674 - -0.9 192,678 - +1.4 192,678 - -1.4 192,678 - -0.6 192,702 + HMPREF1058_RS21355 0.13 -0.4 192,734 - HMPREF1058_RS21355 0.20 -1.7 192,734 - HMPREF1058_RS21355 0.20 -0.9 192,824 + HMPREF1058_RS21355 0.41 +1.4 192,840 - HMPREF1058_RS21355 0.45 -1.2 193,035 + +0.2 193,036 - +1.4 193,036 - -0.1 193,058 + -0.2
Or see this region's nucleotide sequence