Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03500 and HMPREF1058_RS03495 are separated by 10 nucleotides HMPREF1058_RS03495 and HMPREF1058_RS03490 are separated by 11 nucleotides HMPREF1058_RS03490 and HMPREF1058_RS03485 are separated by 185 nucleotides HMPREF1058_RS03485 and HMPREF1058_RS03480 are separated by 3 nucleotides
HMPREF1058_RS03500: HMPREF1058_RS03500 - DEAD/DEAH box helicase, at 266,380 to 268,743
_RS03500
HMPREF1058_RS03495: HMPREF1058_RS03495 - YjbH domain-containing protein, at 268,754 to 269,563
_RS03495
HMPREF1058_RS03490: HMPREF1058_RS03490 - glycosyltransferase family 4 protein, at 269,575 to 270,663
_RS03490
HMPREF1058_RS03485: HMPREF1058_RS03485 - RloB domain-containing protein, at 270,849 to 271,484
_RS03485
HMPREF1058_RS03480: HMPREF1058_RS03480 - ATP-binding protein, at 271,488 to 272,708
_RS03480
Position (kb) 269
270
271 Strain fitness (log2 ratio) -2
-1
0
1
2 at 268.655 kb on - strand at 268.743 kb on + strand at 268.798 kb on + strand at 268.798 kb on + strand at 268.828 kb on + strand at 268.828 kb on + strand at 268.831 kb on - strand at 268.848 kb on + strand, within HMPREF1058_RS03495 at 268.876 kb on + strand, within HMPREF1058_RS03495 at 268.999 kb on + strand, within HMPREF1058_RS03495 at 269.067 kb on - strand, within HMPREF1058_RS03495 at 269.070 kb on + strand, within HMPREF1058_RS03495 at 269.071 kb on - strand, within HMPREF1058_RS03495 at 269.114 kb on - strand, within HMPREF1058_RS03495 at 269.268 kb on + strand, within HMPREF1058_RS03495 at 269.294 kb on + strand, within HMPREF1058_RS03495 at 269.351 kb on + strand, within HMPREF1058_RS03495 at 269.351 kb on + strand, within HMPREF1058_RS03495 at 269.356 kb on - strand, within HMPREF1058_RS03495 at 269.358 kb on + strand at 269.486 kb on + strand at 269.486 kb on + strand at 269.486 kb on + strand at 269.487 kb on - strand at 269.487 kb on - strand at 269.487 kb on - strand at 269.487 kb on - strand at 269.487 kb on - strand at 269.490 kb on + strand at 269.766 kb on + strand, within HMPREF1058_RS03490 at 269.792 kb on + strand, within HMPREF1058_RS03490 at 269.991 kb on + strand, within HMPREF1058_RS03490 at 269.991 kb on + strand, within HMPREF1058_RS03490 at 269.991 kb on + strand, within HMPREF1058_RS03490 at 269.992 kb on - strand, within HMPREF1058_RS03490 at 270.077 kb on + strand, within HMPREF1058_RS03490 at 270.226 kb on + strand, within HMPREF1058_RS03490 at 270.227 kb on - strand, within HMPREF1058_RS03490 at 270.308 kb on + strand, within HMPREF1058_RS03490 at 270.461 kb on + strand, within HMPREF1058_RS03490 at 270.653 kb on - strand at 270.656 kb on - strand at 270.758 kb on - strand at 270.881 kb on + strand at 270.893 kb on + strand at 270.894 kb on - strand at 270.999 kb on - strand, within HMPREF1058_RS03485 at 271.043 kb on + strand, within HMPREF1058_RS03485 at 271.234 kb on + strand, within HMPREF1058_RS03485 at 271.235 kb on - strand, within HMPREF1058_RS03485 at 271.267 kb on - strand, within HMPREF1058_RS03485 at 271.288 kb on - strand, within HMPREF1058_RS03485 at 271.597 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 268,655 - -0.1 268,743 + +0.4 268,798 + +2.3 268,798 + +0.1 268,828 + +1.3 268,828 + +0.0 268,831 - -1.3 268,848 + HMPREF1058_RS03495 0.12 -0.2 268,876 + HMPREF1058_RS03495 0.15 -0.1 268,999 + HMPREF1058_RS03495 0.30 +2.5 269,067 - HMPREF1058_RS03495 0.39 -0.7 269,070 + HMPREF1058_RS03495 0.39 +0.6 269,071 - HMPREF1058_RS03495 0.39 +0.7 269,114 - HMPREF1058_RS03495 0.44 -2.3 269,268 + HMPREF1058_RS03495 0.63 -0.2 269,294 + HMPREF1058_RS03495 0.67 -0.1 269,351 + HMPREF1058_RS03495 0.74 +0.4 269,351 + HMPREF1058_RS03495 0.74 +0.4 269,356 - HMPREF1058_RS03495 0.74 -1.0 269,358 + -0.3 269,486 + +1.3 269,486 + +0.1 269,486 + -0.2 269,487 - -0.4 269,487 - -2.3 269,487 - -0.7 269,487 - -0.3 269,487 - -1.4 269,490 + -0.0 269,766 + HMPREF1058_RS03490 0.18 +1.4 269,792 + HMPREF1058_RS03490 0.20 +0.0 269,991 + HMPREF1058_RS03490 0.38 +0.5 269,991 + HMPREF1058_RS03490 0.38 +0.8 269,991 + HMPREF1058_RS03490 0.38 -1.8 269,992 - HMPREF1058_RS03490 0.38 -0.3 270,077 + HMPREF1058_RS03490 0.46 -0.7 270,226 + HMPREF1058_RS03490 0.60 +0.6 270,227 - HMPREF1058_RS03490 0.60 -0.7 270,308 + HMPREF1058_RS03490 0.67 +0.1 270,461 + HMPREF1058_RS03490 0.81 +0.0 270,653 - -2.1 270,656 - -1.7 270,758 - +1.0 270,881 + +0.5 270,893 + -0.1 270,894 - -0.1 270,999 - HMPREF1058_RS03485 0.24 +1.7 271,043 + HMPREF1058_RS03485 0.31 +0.8 271,234 + HMPREF1058_RS03485 0.61 +0.4 271,235 - HMPREF1058_RS03485 0.61 -0.1 271,267 - HMPREF1058_RS03485 0.66 +0.5 271,288 - HMPREF1058_RS03485 0.69 -0.5 271,597 + +0.7
Or see this region's nucleotide sequence