Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18425 and HMPREF1058_RS18420 are separated by 7 nucleotides HMPREF1058_RS18420 and HMPREF1058_RS18415 are separated by 42 nucleotides HMPREF1058_RS18415 and HMPREF1058_RS18410 are separated by 17 nucleotides
HMPREF1058_RS18425: HMPREF1058_RS18425 - ABC-F family ATP-binding cassette domain-containing protein, at 159,988 to 161,853
_RS18425
HMPREF1058_RS18420: HMPREF1058_RS18420 - DUF3805 domain-containing protein, at 161,861 to 162,694
_RS18420
HMPREF1058_RS18415: HMPREF1058_RS18415 - VOC family protein, at 162,737 to 163,114
_RS18415
HMPREF1058_RS18410: HMPREF1058_RS18410 - MBL fold metallo-hydrolase, at 163,132 to 163,923
_RS18410
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 161.032 kb on - strand, within HMPREF1058_RS18425 at 161.088 kb on + strand, within HMPREF1058_RS18425 at 161.089 kb on - strand, within HMPREF1058_RS18425 at 161.101 kb on + strand, within HMPREF1058_RS18425 at 161.150 kb on + strand, within HMPREF1058_RS18425 at 161.150 kb on + strand, within HMPREF1058_RS18425 at 161.168 kb on + strand, within HMPREF1058_RS18425 at 161.168 kb on + strand, within HMPREF1058_RS18425 at 161.192 kb on - strand, within HMPREF1058_RS18425 at 161.469 kb on - strand, within HMPREF1058_RS18425 at 161.586 kb on - strand, within HMPREF1058_RS18425 at 161.707 kb on + strand at 161.707 kb on + strand at 161.708 kb on - strand at 161.709 kb on + strand at 161.710 kb on - strand at 161.712 kb on + strand at 161.716 kb on + strand at 161.716 kb on + strand at 161.716 kb on + strand at 161.722 kb on - strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.841 kb on + strand at 161.842 kb on - strand at 161.844 kb on - strand at 161.844 kb on - strand at 161.863 kb on - strand at 161.998 kb on + strand, within HMPREF1058_RS18420 at 161.999 kb on - strand, within HMPREF1058_RS18420 at 162.146 kb on + strand, within HMPREF1058_RS18420 at 162.146 kb on + strand, within HMPREF1058_RS18420 at 162.147 kb on - strand, within HMPREF1058_RS18420 at 162.158 kb on - strand, within HMPREF1058_RS18420 at 162.158 kb on - strand, within HMPREF1058_RS18420 at 162.209 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.413 kb on - strand, within HMPREF1058_RS18420 at 162.423 kb on + strand, within HMPREF1058_RS18420 at 162.603 kb on + strand, within HMPREF1058_RS18420 at 162.625 kb on + strand at 162.625 kb on + strand at 162.626 kb on - strand at 162.694 kb on + strand at 162.721 kb on - strand at 162.790 kb on - strand, within HMPREF1058_RS18415 at 162.974 kb on - strand, within HMPREF1058_RS18415 at 162.976 kb on - strand, within HMPREF1058_RS18415 at 163.010 kb on - strand, within HMPREF1058_RS18415 at 163.031 kb on + strand, within HMPREF1058_RS18415 at 163.073 kb on + strand, within HMPREF1058_RS18415 at 163.115 kb on - strand at 163.249 kb on + strand, within HMPREF1058_RS18410 at 163.267 kb on + strand, within HMPREF1058_RS18410 at 163.302 kb on - strand, within HMPREF1058_RS18410 at 163.551 kb on + strand, within HMPREF1058_RS18410 at 163.553 kb on + strand, within HMPREF1058_RS18410 at 163.553 kb on + strand, within HMPREF1058_RS18410 at 163.554 kb on - strand, within HMPREF1058_RS18410 at 163.631 kb on + strand, within HMPREF1058_RS18410 at 163.631 kb on + strand, within HMPREF1058_RS18410 at 163.632 kb on - strand, within HMPREF1058_RS18410
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 remove 161,032 - HMPREF1058_RS18425 0.56 +0.1 161,088 + HMPREF1058_RS18425 0.59 +0.3 161,089 - HMPREF1058_RS18425 0.59 +0.6 161,101 + HMPREF1058_RS18425 0.60 -1.9 161,150 + HMPREF1058_RS18425 0.62 +0.3 161,150 + HMPREF1058_RS18425 0.62 +0.3 161,168 + HMPREF1058_RS18425 0.63 -3.1 161,168 + HMPREF1058_RS18425 0.63 +0.1 161,192 - HMPREF1058_RS18425 0.65 -0.3 161,469 - HMPREF1058_RS18425 0.79 -0.3 161,586 - HMPREF1058_RS18425 0.86 -3.0 161,707 + +1.3 161,707 + -2.3 161,708 - +1.0 161,709 + -1.3 161,710 - -1.5 161,712 + -1.2 161,716 + +0.5 161,716 + -0.4 161,716 + -1.3 161,722 - +0.1 161,841 + -2.8 161,841 + -0.3 161,841 + -1.6 161,841 + -1.2 161,841 + +0.7 161,842 - -0.7 161,844 - -0.7 161,844 - +1.6 161,863 - +0.3 161,998 + HMPREF1058_RS18420 0.16 -2.2 161,999 - HMPREF1058_RS18420 0.17 -0.9 162,146 + HMPREF1058_RS18420 0.34 -2.7 162,146 + HMPREF1058_RS18420 0.34 -1.3 162,147 - HMPREF1058_RS18420 0.34 -0.9 162,158 - HMPREF1058_RS18420 0.36 -3.5 162,158 - HMPREF1058_RS18420 0.36 -3.0 162,209 - HMPREF1058_RS18420 0.42 -0.7 162,413 - HMPREF1058_RS18420 0.66 +0.4 162,413 - HMPREF1058_RS18420 0.66 -0.3 162,413 - HMPREF1058_RS18420 0.66 -1.1 162,423 + HMPREF1058_RS18420 0.67 -1.9 162,603 + HMPREF1058_RS18420 0.89 -1.3 162,625 + -0.7 162,625 + -0.4 162,626 - -2.2 162,694 + +0.3 162,721 - -1.1 162,790 - HMPREF1058_RS18415 0.14 +0.7 162,974 - HMPREF1058_RS18415 0.63 -0.2 162,976 - HMPREF1058_RS18415 0.63 -2.6 163,010 - HMPREF1058_RS18415 0.72 +0.4 163,031 + HMPREF1058_RS18415 0.78 -2.2 163,073 + HMPREF1058_RS18415 0.89 -1.2 163,115 - -0.3 163,249 + HMPREF1058_RS18410 0.15 -1.3 163,267 + HMPREF1058_RS18410 0.17 -1.2 163,302 - HMPREF1058_RS18410 0.21 -1.6 163,551 + HMPREF1058_RS18410 0.53 -0.7 163,553 + HMPREF1058_RS18410 0.53 -0.5 163,553 + HMPREF1058_RS18410 0.53 -0.6 163,554 - HMPREF1058_RS18410 0.53 +0.7 163,631 + HMPREF1058_RS18410 0.63 -0.4 163,631 + HMPREF1058_RS18410 0.63 -1.9 163,632 - HMPREF1058_RS18410 0.63 -0.5
Or see this region's nucleotide sequence