Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11465

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11470 and HMPREF1058_RS11465 are separated by 307 nucleotidesHMPREF1058_RS11465 and HMPREF1058_RS11460 are separated by 116 nucleotides HMPREF1058_RS11470: HMPREF1058_RS11470 - porin family protein, at 371,161 to 371,859 _RS11470 HMPREF1058_RS11465: HMPREF1058_RS11465 - hypothetical protein, at 372,167 to 372,412 _RS11465 HMPREF1058_RS11460: HMPREF1058_RS11460 - hypothetical protein, at 372,529 to 374,187 _RS11460 Position (kb) 372 373Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 371.241 kb on + strand, within HMPREF1058_RS11470at 371.242 kb on - strand, within HMPREF1058_RS11470at 371.259 kb on + strand, within HMPREF1058_RS11470at 371.360 kb on + strand, within HMPREF1058_RS11470at 371.404 kb on + strand, within HMPREF1058_RS11470at 371.405 kb on - strand, within HMPREF1058_RS11470at 371.406 kb on + strand, within HMPREF1058_RS11470at 371.520 kb on + strand, within HMPREF1058_RS11470at 371.520 kb on + strand, within HMPREF1058_RS11470at 371.520 kb on + strand, within HMPREF1058_RS11470at 371.520 kb on + strand, within HMPREF1058_RS11470at 371.521 kb on - strand, within HMPREF1058_RS11470at 371.521 kb on - strand, within HMPREF1058_RS11470at 371.560 kb on + strand, within HMPREF1058_RS11470at 371.579 kb on + strand, within HMPREF1058_RS11470at 371.579 kb on + strand, within HMPREF1058_RS11470at 371.584 kb on - strand, within HMPREF1058_RS11470at 371.617 kb on - strand, within HMPREF1058_RS11470at 371.792 kb on - strandat 371.812 kb on + strandat 371.813 kb on - strandat 371.840 kb on - strandat 371.840 kb on - strandat 371.850 kb on + strandat 371.902 kb on + strandat 371.922 kb on + strandat 371.922 kb on + strandat 371.939 kb on - strandat 371.940 kb on + strandat 371.940 kb on + strandat 371.941 kb on - strandat 371.948 kb on + strandat 371.962 kb on - strandat 371.964 kb on - strandat 372.044 kb on + strandat 372.065 kb on + strandat 372.080 kb on - strandat 372.107 kb on + strandat 372.128 kb on + strandat 372.135 kb on + strandat 372.136 kb on - strandat 372.164 kb on + strandat 372.164 kb on + strandat 372.182 kb on - strandat 372.195 kb on - strand, within HMPREF1058_RS11465at 372.195 kb on - strand, within HMPREF1058_RS11465at 372.199 kb on + strand, within HMPREF1058_RS11465at 372.199 kb on + strand, within HMPREF1058_RS11465at 372.254 kb on + strand, within HMPREF1058_RS11465at 372.257 kb on - strand, within HMPREF1058_RS11465at 372.296 kb on - strand, within HMPREF1058_RS11465at 372.399 kb on - strandat 372.412 kb on + strandat 372.466 kb on + strandat 372.473 kb on - strandat 372.496 kb on - strandat 372.588 kb on + strandat 372.601 kb on + strandat 372.702 kb on - strand, within HMPREF1058_RS11460at 372.846 kb on + strand, within HMPREF1058_RS11460at 372.846 kb on + strand, within HMPREF1058_RS11460at 372.846 kb on + strand, within HMPREF1058_RS11460at 372.846 kb on + strand, within HMPREF1058_RS11460at 372.847 kb on - strand, within HMPREF1058_RS11460at 372.964 kb on + strand, within HMPREF1058_RS11460at 373.002 kb on - strand, within HMPREF1058_RS11460at 373.007 kb on - strand, within HMPREF1058_RS11460at 373.007 kb on - strand, within HMPREF1058_RS11460at 373.045 kb on - strand, within HMPREF1058_RS11460at 373.086 kb on + strand, within HMPREF1058_RS11460at 373.086 kb on + strand, within HMPREF1058_RS11460at 373.177 kb on + strand, within HMPREF1058_RS11460at 373.178 kb on - strand, within HMPREF1058_RS11460at 373.178 kb on - strand, within HMPREF1058_RS11460at 373.178 kb on - strand, within HMPREF1058_RS11460at 373.178 kb on - strand, within HMPREF1058_RS11460at 373.179 kb on + strand, within HMPREF1058_RS11460at 373.180 kb on - strand, within HMPREF1058_RS11460at 373.240 kb on - strand, within HMPREF1058_RS11460at 373.243 kb on + strand, within HMPREF1058_RS11460at 373.243 kb on + strand, within HMPREF1058_RS11460at 373.279 kb on - strand, within HMPREF1058_RS11460at 373.311 kb on + strand, within HMPREF1058_RS11460at 373.312 kb on - strand, within HMPREF1058_RS11460at 373.350 kb on - strand, within HMPREF1058_RS11460at 373.352 kb on + strand, within HMPREF1058_RS11460at 373.353 kb on - strand, within HMPREF1058_RS11460at 373.353 kb on - strand, within HMPREF1058_RS11460at 373.385 kb on + strand, within HMPREF1058_RS11460at 373.396 kb on + strand, within HMPREF1058_RS11460at 373.396 kb on + strand, within HMPREF1058_RS11460at 373.396 kb on + strand, within HMPREF1058_RS11460at 373.396 kb on + strand, within HMPREF1058_RS11460at 373.397 kb on - strand, within HMPREF1058_RS11460at 373.397 kb on - strand, within HMPREF1058_RS11460at 373.397 kb on - strand, within HMPREF1058_RS11460at 373.397 kb on - strand, within HMPREF1058_RS11460at 373.397 kb on - strand, within HMPREF1058_RS11460at 373.404 kb on - strand, within HMPREF1058_RS11460

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7
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371,241 + HMPREF1058_RS11470 0.11 -3.1
371,242 - HMPREF1058_RS11470 0.12 +0.6
371,259 + HMPREF1058_RS11470 0.14 +1.0
371,360 + HMPREF1058_RS11470 0.28 -0.0
371,404 + HMPREF1058_RS11470 0.35 -0.3
371,405 - HMPREF1058_RS11470 0.35 -1.5
371,406 + HMPREF1058_RS11470 0.35 -2.4
371,520 + HMPREF1058_RS11470 0.51 +0.5
371,520 + HMPREF1058_RS11470 0.51 -0.8
371,520 + HMPREF1058_RS11470 0.51 -1.6
371,520 + HMPREF1058_RS11470 0.51 +0.6
371,521 - HMPREF1058_RS11470 0.52 -0.2
371,521 - HMPREF1058_RS11470 0.52 +0.2
371,560 + HMPREF1058_RS11470 0.57 -0.3
371,579 + HMPREF1058_RS11470 0.60 -0.5
371,579 + HMPREF1058_RS11470 0.60 +1.0
371,584 - HMPREF1058_RS11470 0.61 -1.4
371,617 - HMPREF1058_RS11470 0.65 +0.3
371,792 - +0.0
371,812 + +1.2
371,813 - +1.2
371,840 - -2.0
371,840 - -2.4
371,850 + -2.1
371,902 + -0.2
371,922 + +0.8
371,922 + -1.5
371,939 - +0.5
371,940 + +0.6
371,940 + -2.8
371,941 - +1.5
371,948 + +2.7
371,962 - +0.4
371,964 - -0.9
372,044 + -1.1
372,065 + +0.5
372,080 - +1.0
372,107 + +0.3
372,128 + -1.6
372,135 + -3.4
372,136 - -0.1
372,164 + +1.2
372,164 + -1.4
372,182 - -1.6
372,195 - HMPREF1058_RS11465 0.11 -0.2
372,195 - HMPREF1058_RS11465 0.11 +0.5
372,199 + HMPREF1058_RS11465 0.13 -1.0
372,199 + HMPREF1058_RS11465 0.13 +1.8
372,254 + HMPREF1058_RS11465 0.35 -2.0
372,257 - HMPREF1058_RS11465 0.37 -0.2
372,296 - HMPREF1058_RS11465 0.52 +1.4
372,399 - -0.4
372,412 + +0.7
372,466 + -2.6
372,473 - -3.4
372,496 - +0.1
372,588 + -3.0
372,601 + +0.1
372,702 - HMPREF1058_RS11460 0.10 -1.4
372,846 + HMPREF1058_RS11460 0.19 +0.1
372,846 + HMPREF1058_RS11460 0.19 +0.4
372,846 + HMPREF1058_RS11460 0.19 -2.0
372,846 + HMPREF1058_RS11460 0.19 -4.1
372,847 - HMPREF1058_RS11460 0.19 +0.1
372,964 + HMPREF1058_RS11460 0.26 +2.5
373,002 - HMPREF1058_RS11460 0.29 -0.0
373,007 - HMPREF1058_RS11460 0.29 +1.4
373,007 - HMPREF1058_RS11460 0.29 +0.4
373,045 - HMPREF1058_RS11460 0.31 +0.2
373,086 + HMPREF1058_RS11460 0.34 -2.0
373,086 + HMPREF1058_RS11460 0.34 +1.3
373,177 + HMPREF1058_RS11460 0.39 -0.6
373,178 - HMPREF1058_RS11460 0.39 +0.5
373,178 - HMPREF1058_RS11460 0.39 +1.0
373,178 - HMPREF1058_RS11460 0.39 -0.7
373,178 - HMPREF1058_RS11460 0.39 -1.4
373,179 + HMPREF1058_RS11460 0.39 -2.4
373,180 - HMPREF1058_RS11460 0.39 +0.5
373,240 - HMPREF1058_RS11460 0.43 -0.1
373,243 + HMPREF1058_RS11460 0.43 +0.1
373,243 + HMPREF1058_RS11460 0.43 -2.7
373,279 - HMPREF1058_RS11460 0.45 -0.3
373,311 + HMPREF1058_RS11460 0.47 -1.8
373,312 - HMPREF1058_RS11460 0.47 +0.1
373,350 - HMPREF1058_RS11460 0.49 -0.6
373,352 + HMPREF1058_RS11460 0.50 +5.7
373,353 - HMPREF1058_RS11460 0.50 -0.3
373,353 - HMPREF1058_RS11460 0.50 +1.0
373,385 + HMPREF1058_RS11460 0.52 +0.3
373,396 + HMPREF1058_RS11460 0.52 -0.4
373,396 + HMPREF1058_RS11460 0.52 -1.6
373,396 + HMPREF1058_RS11460 0.52 -0.2
373,396 + HMPREF1058_RS11460 0.52 +0.2
373,397 - HMPREF1058_RS11460 0.52 +0.2
373,397 - HMPREF1058_RS11460 0.52 +0.7
373,397 - HMPREF1058_RS11460 0.52 -2.8
373,397 - HMPREF1058_RS11460 0.52 -0.4
373,397 - HMPREF1058_RS11460 0.52 -0.1
373,404 - HMPREF1058_RS11460 0.53 -2.0

Or see this region's nucleotide sequence