Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07010 and HMPREF1058_RS07005 are separated by 200 nucleotides HMPREF1058_RS07005 and HMPREF1058_RS07000 are separated by 89 nucleotides
HMPREF1058_RS07010: HMPREF1058_RS07010 - endolytic transglycosylase MltG, at 335,557 to 336,591
_RS07010
HMPREF1058_RS07005: HMPREF1058_RS07005 - alpha-N-arabinofuranosidase, at 336,792 to 338,315
_RS07005
HMPREF1058_RS07000: HMPREF1058_RS07000 - DNA/RNA non-specific endonuclease, at 338,405 to 339,262
_RS07000
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 335.875 kb on - strand, within HMPREF1058_RS07010 at 335.977 kb on - strand, within HMPREF1058_RS07010 at 336.069 kb on + strand, within HMPREF1058_RS07010 at 336.093 kb on + strand, within HMPREF1058_RS07010 at 336.126 kb on + strand, within HMPREF1058_RS07010 at 336.126 kb on + strand at 336.235 kb on + strand, within HMPREF1058_RS07010 at 336.340 kb on + strand, within HMPREF1058_RS07010 at 336.341 kb on - strand, within HMPREF1058_RS07010 at 336.390 kb on + strand, within HMPREF1058_RS07010 at 336.397 kb on - strand, within HMPREF1058_RS07010 at 336.428 kb on - strand, within HMPREF1058_RS07010 at 336.454 kb on + strand, within HMPREF1058_RS07010 at 336.456 kb on + strand, within HMPREF1058_RS07010 at 336.458 kb on + strand, within HMPREF1058_RS07010 at 336.459 kb on - strand, within HMPREF1058_RS07010 at 336.459 kb on - strand, within HMPREF1058_RS07010 at 336.462 kb on + strand, within HMPREF1058_RS07010 at 336.464 kb on + strand, within HMPREF1058_RS07010 at 336.504 kb on - strand at 336.509 kb on + strand at 336.509 kb on + strand at 336.510 kb on - strand at 336.510 kb on - strand at 336.510 kb on - strand at 336.511 kb on + strand at 336.512 kb on - strand at 336.514 kb on - strand at 336.514 kb on - strand at 336.550 kb on - strand at 336.559 kb on - strand at 336.559 kb on - strand at 336.565 kb on + strand at 336.615 kb on - strand at 336.623 kb on - strand at 336.625 kb on - strand at 336.625 kb on - strand at 336.704 kb on + strand at 336.704 kb on + strand at 336.705 kb on - strand at 336.746 kb on + strand at 336.748 kb on + strand at 336.792 kb on - strand at 336.853 kb on + strand at 336.854 kb on - strand at 336.926 kb on + strand at 336.926 kb on + strand at 336.927 kb on - strand at 337.063 kb on - strand, within HMPREF1058_RS07005 at 337.146 kb on - strand, within HMPREF1058_RS07005 at 337.186 kb on + strand, within HMPREF1058_RS07005 at 337.201 kb on - strand, within HMPREF1058_RS07005 at 337.201 kb on - strand, within HMPREF1058_RS07005 at 337.216 kb on + strand, within HMPREF1058_RS07005 at 337.258 kb on - strand, within HMPREF1058_RS07005 at 337.345 kb on + strand, within HMPREF1058_RS07005 at 337.349 kb on + strand, within HMPREF1058_RS07005 at 337.393 kb on - strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.434 kb on + strand, within HMPREF1058_RS07005 at 337.435 kb on - strand, within HMPREF1058_RS07005 at 337.435 kb on - strand, within HMPREF1058_RS07005 at 337.479 kb on + strand, within HMPREF1058_RS07005 at 337.551 kb on + strand, within HMPREF1058_RS07005 at 337.664 kb on + strand, within HMPREF1058_RS07005 at 337.834 kb on - strand, within HMPREF1058_RS07005 at 337.834 kb on - strand, within HMPREF1058_RS07005 at 337.933 kb on - strand, within HMPREF1058_RS07005 at 337.951 kb on - strand, within HMPREF1058_RS07005 at 337.952 kb on + strand, within HMPREF1058_RS07005 at 337.953 kb on - strand, within HMPREF1058_RS07005 at 337.971 kb on - strand, within HMPREF1058_RS07005 at 337.975 kb on - strand, within HMPREF1058_RS07005 at 338.011 kb on + strand, within HMPREF1058_RS07005 at 338.024 kb on + strand, within HMPREF1058_RS07005 at 338.024 kb on + strand, within HMPREF1058_RS07005 at 338.039 kb on - strand, within HMPREF1058_RS07005 at 338.119 kb on + strand, within HMPREF1058_RS07005 at 338.186 kb on - strand at 338.193 kb on + strand at 338.194 kb on - strand at 338.199 kb on - strand at 338.313 kb on + strand at 338.322 kb on + strand at 338.344 kb on + strand at 338.344 kb on + strand at 338.345 kb on - strand at 338.345 kb on - strand at 338.345 kb on - strand at 338.348 kb on + strand at 338.349 kb on - strand at 338.349 kb on - strand at 338.349 kb on - strand at 338.362 kb on + strand at 338.362 kb on + strand at 338.362 kb on + strand at 338.362 kb on + strand at 338.363 kb on - strand at 338.363 kb on - strand at 338.363 kb on - strand at 338.366 kb on + strand at 338.366 kb on + strand at 338.367 kb on - strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.370 kb on + strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.371 kb on - strand at 338.374 kb on + strand at 338.516 kb on - strand, within HMPREF1058_RS07000 at 338.533 kb on + strand, within HMPREF1058_RS07000 at 338.558 kb on - strand, within HMPREF1058_RS07000 at 338.659 kb on + strand, within HMPREF1058_RS07000 at 338.667 kb on + strand, within HMPREF1058_RS07000 at 338.667 kb on + strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.668 kb on - strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.669 kb on + strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.670 kb on - strand, within HMPREF1058_RS07000 at 338.688 kb on + strand, within HMPREF1058_RS07000 at 338.689 kb on - strand, within HMPREF1058_RS07000 at 338.789 kb on - strand, within HMPREF1058_RS07000 at 338.790 kb on + strand, within HMPREF1058_RS07000 at 338.791 kb on - strand, within HMPREF1058_RS07000 at 338.873 kb on - strand, within HMPREF1058_RS07000 at 338.885 kb on - strand, within HMPREF1058_RS07000 at 338.887 kb on - strand, within HMPREF1058_RS07000 at 338.887 kb on - strand, within HMPREF1058_RS07000 at 338.904 kb on - strand, within HMPREF1058_RS07000 at 338.904 kb on - strand, within HMPREF1058_RS07000 at 339.008 kb on - strand, within HMPREF1058_RS07000 at 339.009 kb on + strand, within HMPREF1058_RS07000 at 339.019 kb on + strand, within HMPREF1058_RS07000 at 339.020 kb on - strand, within HMPREF1058_RS07000 at 339.053 kb on - strand at 339.063 kb on - strand, within HMPREF1058_RS07000 at 339.181 kb on + strand at 339.182 kb on - strand at 339.184 kb on - strand at 339.203 kb on + strand at 339.204 kb on - strand at 339.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 remove 335,875 - HMPREF1058_RS07010 0.31 +1.4 335,977 - HMPREF1058_RS07010 0.41 -0.3 336,069 + HMPREF1058_RS07010 0.49 -0.7 336,093 + HMPREF1058_RS07010 0.52 +1.0 336,126 + HMPREF1058_RS07010 0.55 -2.5 336,126 + +0.2 336,235 + HMPREF1058_RS07010 0.66 -0.3 336,340 + HMPREF1058_RS07010 0.76 -0.6 336,341 - HMPREF1058_RS07010 0.76 +0.3 336,390 + HMPREF1058_RS07010 0.80 +0.1 336,397 - HMPREF1058_RS07010 0.81 -0.1 336,428 - HMPREF1058_RS07010 0.84 -2.1 336,454 + HMPREF1058_RS07010 0.87 -0.3 336,456 + HMPREF1058_RS07010 0.87 -1.1 336,458 + HMPREF1058_RS07010 0.87 +0.3 336,459 - HMPREF1058_RS07010 0.87 -0.7 336,459 - HMPREF1058_RS07010 0.87 -0.4 336,462 + HMPREF1058_RS07010 0.87 -1.4 336,464 + HMPREF1058_RS07010 0.88 -1.5 336,504 - -1.6 336,509 + +0.2 336,509 + -2.8 336,510 - -0.1 336,510 - +0.2 336,510 - +0.5 336,511 + -0.2 336,512 - +1.0 336,514 - +1.4 336,514 - -2.3 336,550 - -0.2 336,559 - +0.5 336,559 - +0.2 336,565 + -3.2 336,615 - -0.2 336,623 - +0.8 336,625 - -0.6 336,625 - -0.1 336,704 + -2.1 336,704 + +0.2 336,705 - -2.9 336,746 + -0.8 336,748 + +0.1 336,792 - -1.7 336,853 + -1.4 336,854 - -4.0 336,926 + -2.2 336,926 + -2.3 336,927 - -1.6 337,063 - HMPREF1058_RS07005 0.18 -1.9 337,146 - HMPREF1058_RS07005 0.23 -2.9 337,186 + HMPREF1058_RS07005 0.26 -1.3 337,201 - HMPREF1058_RS07005 0.27 -0.8 337,201 - HMPREF1058_RS07005 0.27 -2.7 337,216 + HMPREF1058_RS07005 0.28 -1.1 337,258 - HMPREF1058_RS07005 0.31 -1.3 337,345 + HMPREF1058_RS07005 0.36 -2.3 337,349 + HMPREF1058_RS07005 0.37 -3.0 337,393 - HMPREF1058_RS07005 0.39 -2.7 337,434 + HMPREF1058_RS07005 0.42 -3.9 337,434 + HMPREF1058_RS07005 0.42 -1.9 337,434 + HMPREF1058_RS07005 0.42 -3.3 337,435 - HMPREF1058_RS07005 0.42 -1.8 337,435 - HMPREF1058_RS07005 0.42 -0.3 337,479 + HMPREF1058_RS07005 0.45 -1.1 337,551 + HMPREF1058_RS07005 0.50 -2.7 337,664 + HMPREF1058_RS07005 0.57 -3.0 337,834 - HMPREF1058_RS07005 0.68 -2.9 337,834 - HMPREF1058_RS07005 0.68 -1.3 337,933 - HMPREF1058_RS07005 0.75 -3.7 337,951 - HMPREF1058_RS07005 0.76 -3.2 337,952 + HMPREF1058_RS07005 0.76 -4.1 337,953 - HMPREF1058_RS07005 0.76 -3.6 337,971 - HMPREF1058_RS07005 0.77 -3.1 337,975 - HMPREF1058_RS07005 0.78 -2.1 338,011 + HMPREF1058_RS07005 0.80 -1.6 338,024 + HMPREF1058_RS07005 0.81 -2.6 338,024 + HMPREF1058_RS07005 0.81 -2.2 338,039 - HMPREF1058_RS07005 0.82 +0.7 338,119 + HMPREF1058_RS07005 0.87 -3.0 338,186 - -1.6 338,193 + -3.0 338,194 - -2.4 338,199 - -2.8 338,313 + -1.7 338,322 + +0.5 338,344 + +0.6 338,344 + +0.2 338,345 - -0.2 338,345 - -0.4 338,345 - -0.2 338,348 + +0.2 338,349 - -0.7 338,349 - +1.0 338,349 - -1.9 338,362 + +0.5 338,362 + -0.6 338,362 + +1.3 338,362 + -3.5 338,363 - -0.5 338,363 - -2.3 338,363 - -0.7 338,366 + +0.7 338,366 + -2.2 338,367 - +1.0 338,370 + +1.2 338,370 + -0.1 338,370 + -0.8 338,370 + -0.5 338,370 + +1.7 338,371 - -0.5 338,371 - +0.7 338,371 - +0.4 338,371 - -2.1 338,371 - -2.2 338,374 + +0.6 338,516 - HMPREF1058_RS07000 0.13 +0.7 338,533 + HMPREF1058_RS07000 0.15 +2.0 338,558 - HMPREF1058_RS07000 0.18 +0.7 338,659 + HMPREF1058_RS07000 0.30 +0.7 338,667 + HMPREF1058_RS07000 0.31 -0.4 338,667 + HMPREF1058_RS07000 0.31 +0.4 338,668 - HMPREF1058_RS07000 0.31 -2.0 338,668 - HMPREF1058_RS07000 0.31 -1.3 338,668 - HMPREF1058_RS07000 0.31 +0.4 338,669 + HMPREF1058_RS07000 0.31 +1.2 338,669 + HMPREF1058_RS07000 0.31 -0.1 338,669 + HMPREF1058_RS07000 0.31 -0.3 338,670 - HMPREF1058_RS07000 0.31 +0.1 338,670 - HMPREF1058_RS07000 0.31 -2.5 338,670 - HMPREF1058_RS07000 0.31 +0.4 338,688 + HMPREF1058_RS07000 0.33 +0.2 338,689 - HMPREF1058_RS07000 0.33 +1.6 338,789 - HMPREF1058_RS07000 0.45 -0.1 338,790 + HMPREF1058_RS07000 0.45 +0.5 338,791 - HMPREF1058_RS07000 0.45 +1.7 338,873 - HMPREF1058_RS07000 0.55 +0.2 338,885 - HMPREF1058_RS07000 0.56 +1.2 338,887 - HMPREF1058_RS07000 0.56 -0.2 338,887 - HMPREF1058_RS07000 0.56 +1.9 338,904 - HMPREF1058_RS07000 0.58 -0.4 338,904 - HMPREF1058_RS07000 0.58 +0.3 339,008 - HMPREF1058_RS07000 0.70 +1.1 339,009 + HMPREF1058_RS07000 0.70 -2.1 339,019 + HMPREF1058_RS07000 0.72 +1.0 339,020 - HMPREF1058_RS07000 0.72 +1.4 339,053 - +1.2 339,063 - HMPREF1058_RS07000 0.77 -3.2 339,181 + -0.8 339,182 - -2.3 339,184 - -1.3 339,203 + -2.6 339,204 - +0.0 339,295 + -0.9
Or see this region's nucleotide sequence