Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21445 and HMPREF1058_RS10675 are separated by 608 nucleotides HMPREF1058_RS10675 and HMPREF1058_RS10670 are separated by 489 nucleotides
HMPREF1058_RS21445: HMPREF1058_RS21445 - DUF2062 domain-containing protein, at 603,630 to 604,808
_RS21445
HMPREF1058_RS10675: HMPREF1058_RS10675 - DUF4221 family protein, at 605,417 to 606,115
_RS10675
HMPREF1058_RS10670: HMPREF1058_RS10670 - DUF4221 family protein, at 606,605 to 607,303
_RS10670
Position (kb) 605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 604.417 kb on - strand, within HMPREF1058_RS21445 at 604.735 kb on + strand at 604.736 kb on - strand at 604.746 kb on - strand at 604.771 kb on - strand at 604.802 kb on + strand at 604.803 kb on - strand at 604.803 kb on - strand at 604.859 kb on - strand at 604.868 kb on + strand at 604.899 kb on - strand at 604.900 kb on + strand at 604.935 kb on + strand at 604.960 kb on - strand at 605.545 kb on + strand, within HMPREF1058_RS10675 at 605.545 kb on + strand, within HMPREF1058_RS10675 at 605.545 kb on + strand at 605.545 kb on + strand, within HMPREF1058_RS10675 at 605.545 kb on + strand, within HMPREF1058_RS10675 at 605.546 kb on - strand, within HMPREF1058_RS10675 at 605.546 kb on - strand, within HMPREF1058_RS10675 at 605.546 kb on - strand, within HMPREF1058_RS10675 at 605.641 kb on - strand, within HMPREF1058_RS10675 at 605.657 kb on + strand, within HMPREF1058_RS10675 at 605.694 kb on + strand, within HMPREF1058_RS10675 at 605.763 kb on - strand, within HMPREF1058_RS10675 at 605.767 kb on - strand, within HMPREF1058_RS10675 at 605.798 kb on + strand, within HMPREF1058_RS10675 at 605.887 kb on - strand, within HMPREF1058_RS10675 at 605.889 kb on - strand, within HMPREF1058_RS10675 at 605.920 kb on - strand, within HMPREF1058_RS10675 at 605.947 kb on - strand, within HMPREF1058_RS10675 at 605.955 kb on - strand, within HMPREF1058_RS10675 at 605.960 kb on + strand, within HMPREF1058_RS10675 at 606.095 kb on - strand at 606.119 kb on - strand at 606.685 kb on + strand, within HMPREF1058_RS10670 at 606.734 kb on - strand, within HMPREF1058_RS10670 at 606.742 kb on + strand, within HMPREF1058_RS10670 at 606.743 kb on - strand, within HMPREF1058_RS10670 at 606.795 kb on - strand, within HMPREF1058_RS10670 at 606.795 kb on - strand, within HMPREF1058_RS10670 at 606.795 kb on - strand, within HMPREF1058_RS10670 at 606.830 kb on - strand, within HMPREF1058_RS10670 at 606.853 kb on + strand, within HMPREF1058_RS10670 at 606.935 kb on - strand, within HMPREF1058_RS10670 at 606.947 kb on + strand, within HMPREF1058_RS10670 at 606.948 kb on - strand, within HMPREF1058_RS10670 at 606.950 kb on + strand, within HMPREF1058_RS10670 at 606.950 kb on + strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.951 kb on - strand, within HMPREF1058_RS10670 at 606.952 kb on + strand, within HMPREF1058_RS10670 at 606.952 kb on + strand, within HMPREF1058_RS10670 at 606.952 kb on + strand, within HMPREF1058_RS10670 at 606.953 kb on - strand, within HMPREF1058_RS10670 at 606.953 kb on - strand, within HMPREF1058_RS10670 at 606.953 kb on - strand, within HMPREF1058_RS10670 at 607.052 kb on + strand, within HMPREF1058_RS10670 at 607.074 kb on + strand, within HMPREF1058_RS10670 at 607.074 kb on + strand, within HMPREF1058_RS10670 at 607.108 kb on - strand, within HMPREF1058_RS10670
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 remove 604,417 - HMPREF1058_RS21445 0.67 -0.8 604,735 + +1.8 604,736 - -2.3 604,746 - +1.7 604,771 - +1.6 604,802 + +0.1 604,803 - -3.0 604,803 - +0.6 604,859 - -0.9 604,868 + +1.2 604,899 - -2.2 604,900 + -0.1 604,935 + -0.2 604,960 - +0.4 605,545 + HMPREF1058_RS10675 0.18 -2.3 605,545 + HMPREF1058_RS10675 0.18 +3.4 605,545 + -1.0 605,545 + HMPREF1058_RS10675 0.18 -1.9 605,545 + HMPREF1058_RS10675 0.18 -0.5 605,546 - HMPREF1058_RS10675 0.18 -0.2 605,546 - HMPREF1058_RS10675 0.18 +0.0 605,546 - HMPREF1058_RS10675 0.18 -1.6 605,641 - HMPREF1058_RS10675 0.32 +0.3 605,657 + HMPREF1058_RS10675 0.34 -1.2 605,694 + HMPREF1058_RS10675 0.40 +2.0 605,763 - HMPREF1058_RS10675 0.49 -1.1 605,767 - HMPREF1058_RS10675 0.50 -0.3 605,798 + HMPREF1058_RS10675 0.55 +0.1 605,887 - HMPREF1058_RS10675 0.67 -0.8 605,889 - HMPREF1058_RS10675 0.68 -0.6 605,920 - HMPREF1058_RS10675 0.72 -1.2 605,947 - HMPREF1058_RS10675 0.76 -0.3 605,955 - HMPREF1058_RS10675 0.77 -1.1 605,960 + HMPREF1058_RS10675 0.78 +1.4 606,095 - -0.0 606,119 - -0.5 606,685 + HMPREF1058_RS10670 0.11 -1.3 606,734 - HMPREF1058_RS10670 0.18 +0.3 606,742 + HMPREF1058_RS10670 0.20 +0.2 606,743 - HMPREF1058_RS10670 0.20 -1.3 606,795 - HMPREF1058_RS10670 0.27 -1.8 606,795 - HMPREF1058_RS10670 0.27 -0.7 606,795 - HMPREF1058_RS10670 0.27 -0.3 606,830 - HMPREF1058_RS10670 0.32 -1.0 606,853 + HMPREF1058_RS10670 0.35 -0.9 606,935 - HMPREF1058_RS10670 0.47 -0.0 606,947 + HMPREF1058_RS10670 0.49 +1.3 606,948 - HMPREF1058_RS10670 0.49 +0.7 606,950 + HMPREF1058_RS10670 0.49 +0.7 606,950 + HMPREF1058_RS10670 0.49 -1.6 606,951 - HMPREF1058_RS10670 0.49 -0.6 606,951 - HMPREF1058_RS10670 0.49 -1.0 606,951 - HMPREF1058_RS10670 0.49 -0.9 606,951 - HMPREF1058_RS10670 0.49 +3.4 606,951 - HMPREF1058_RS10670 0.49 +0.7 606,951 - HMPREF1058_RS10670 0.49 -2.4 606,951 - HMPREF1058_RS10670 0.49 -0.3 606,952 + HMPREF1058_RS10670 0.50 +1.9 606,952 + HMPREF1058_RS10670 0.50 -0.5 606,952 + HMPREF1058_RS10670 0.50 -0.7 606,953 - HMPREF1058_RS10670 0.50 -0.2 606,953 - HMPREF1058_RS10670 0.50 -1.7 606,953 - HMPREF1058_RS10670 0.50 -0.6 607,052 + HMPREF1058_RS10670 0.64 +1.1 607,074 + HMPREF1058_RS10670 0.67 -0.3 607,074 + HMPREF1058_RS10670 0.67 -0.8 607,108 - HMPREF1058_RS10670 0.72 -0.0
Or see this region's nucleotide sequence