Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10235 and HMPREF1058_RS10230 overlap by 14 nucleotides HMPREF1058_RS10230 and HMPREF1058_RS10225 are separated by 103 nucleotides HMPREF1058_RS10225 and HMPREF1058_RS10220 are separated by 36 nucleotides HMPREF1058_RS10220 and HMPREF1058_RS10215 overlap by 23 nucleotides
HMPREF1058_RS10235: HMPREF1058_RS10235 - phage portal protein, at 704,011 to 705,438
_RS10235
HMPREF1058_RS10230: HMPREF1058_RS10230 - hypothetical protein, at 705,425 to 705,892
_RS10230
HMPREF1058_RS10225: HMPREF1058_RS10225 - hypothetical protein, at 705,996 to 706,235
_RS10225
HMPREF1058_RS10220: HMPREF1058_RS10220 - hypothetical protein, at 706,272 to 706,883
_RS10220
HMPREF1058_RS10215: HMPREF1058_RS10215 - DUF4417 domain-containing protein, at 706,861 to 707,979
_RS10215
Position (kb) 706
707 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 705.272 kb on + strand, within HMPREF1058_RS10235 at 705.412 kb on + strand at 705.637 kb on + strand, within HMPREF1058_RS10230 at 705.739 kb on + strand, within HMPREF1058_RS10230 at 705.868 kb on + strand at 706.080 kb on + strand, within HMPREF1058_RS10225 at 706.080 kb on + strand, within HMPREF1058_RS10225 at 706.295 kb on + strand at 706.319 kb on + strand at 706.346 kb on + strand, within HMPREF1058_RS10220 at 706.631 kb on + strand, within HMPREF1058_RS10220 at 706.712 kb on + strand, within HMPREF1058_RS10220 at 706.712 kb on + strand, within HMPREF1058_RS10220 at 706.764 kb on + strand, within HMPREF1058_RS10220 at 706.823 kb on + strand at 706.831 kb on + strand at 706.831 kb on + strand at 706.899 kb on + strand at 706.908 kb on + strand at 706.935 kb on + strand at 707.057 kb on + strand, within HMPREF1058_RS10215 at 707.108 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.229 kb on + strand, within HMPREF1058_RS10215 at 707.330 kb on + strand, within HMPREF1058_RS10215 at 707.459 kb on + strand, within HMPREF1058_RS10215 at 707.459 kb on + strand, within HMPREF1058_RS10215 at 707.604 kb on + strand, within HMPREF1058_RS10215 at 707.704 kb on + strand, within HMPREF1058_RS10215 at 707.705 kb on - strand, within HMPREF1058_RS10215 at 707.705 kb on - strand, within HMPREF1058_RS10215 at 707.807 kb on - strand, within HMPREF1058_RS10215 at 707.811 kb on - strand, within HMPREF1058_RS10215 at 707.811 kb on - strand, within HMPREF1058_RS10215
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 remove 705,272 + HMPREF1058_RS10235 0.88 -0.3 705,412 + -0.4 705,637 + HMPREF1058_RS10230 0.45 +0.6 705,739 + HMPREF1058_RS10230 0.67 +4.9 705,868 + -0.3 706,080 + HMPREF1058_RS10225 0.35 -2.1 706,080 + HMPREF1058_RS10225 0.35 -2.4 706,295 + -0.8 706,319 + +0.8 706,346 + HMPREF1058_RS10220 0.12 +0.2 706,631 + HMPREF1058_RS10220 0.59 -1.0 706,712 + HMPREF1058_RS10220 0.72 +0.8 706,712 + HMPREF1058_RS10220 0.72 +0.1 706,764 + HMPREF1058_RS10220 0.80 +0.3 706,823 + -2.6 706,831 + -0.0 706,831 + -0.8 706,899 + -1.8 706,908 + +2.3 706,935 + +2.0 707,057 + HMPREF1058_RS10215 0.18 +0.4 707,108 + HMPREF1058_RS10215 0.22 -0.0 707,144 + HMPREF1058_RS10215 0.25 -1.4 707,144 + HMPREF1058_RS10215 0.25 -1.5 707,144 + HMPREF1058_RS10215 0.25 +0.6 707,144 + HMPREF1058_RS10215 0.25 -0.4 707,229 + HMPREF1058_RS10215 0.33 -0.9 707,330 + HMPREF1058_RS10215 0.42 -1.0 707,459 + HMPREF1058_RS10215 0.53 -0.5 707,459 + HMPREF1058_RS10215 0.53 +0.2 707,604 + HMPREF1058_RS10215 0.66 -1.7 707,704 + HMPREF1058_RS10215 0.75 -1.2 707,705 - HMPREF1058_RS10215 0.75 -0.8 707,705 - HMPREF1058_RS10215 0.75 -0.3 707,807 - HMPREF1058_RS10215 0.85 -1.3 707,811 - HMPREF1058_RS10215 0.85 -1.3 707,811 - HMPREF1058_RS10215 0.85 -1.5
Or see this region's nucleotide sequence