Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18670 and HMPREF1058_RS18660 are separated by 424 nucleotides HMPREF1058_RS18660 and HMPREF1058_RS18655 are separated by 8 nucleotides HMPREF1058_RS18655 and HMPREF1058_RS18650 are separated by 195 nucleotides
HMPREF1058_RS18670: HMPREF1058_RS18670 - F0F1 ATP synthase subunit A, at 103,089 to 104,180
_RS18670
HMPREF1058_RS18660: HMPREF1058_RS18660 - hypothetical protein, at 104,605 to 104,859
_RS18660
HMPREF1058_RS18655: HMPREF1058_RS18655 - F0F1 ATP synthase subunit beta, at 104,868 to 106,403
_RS18655
HMPREF1058_RS18650: HMPREF1058_RS18650 - M28 family peptidase, at 106,599 to 108,146
_RS18650
Position (kb) 104
105
106
107 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 103.869 kb on - strand, within HMPREF1058_RS18670 at 103.897 kb on + strand, within HMPREF1058_RS18670 at 103.991 kb on + strand, within HMPREF1058_RS18670 at 103.991 kb on + strand, within HMPREF1058_RS18670 at 103.992 kb on - strand, within HMPREF1058_RS18670 at 103.995 kb on + strand, within HMPREF1058_RS18670 at 103.995 kb on + strand, within HMPREF1058_RS18670 at 103.996 kb on - strand, within HMPREF1058_RS18670 at 103.996 kb on - strand, within HMPREF1058_RS18670 at 103.997 kb on + strand, within HMPREF1058_RS18670 at 103.998 kb on - strand, within HMPREF1058_RS18670 at 103.998 kb on - strand, within HMPREF1058_RS18670 at 103.998 kb on - strand, within HMPREF1058_RS18670 at 104.003 kb on + strand, within HMPREF1058_RS18670 at 104.003 kb on + strand, within HMPREF1058_RS18670 at 104.004 kb on - strand, within HMPREF1058_RS18670 at 104.010 kb on + strand, within HMPREF1058_RS18670 at 104.010 kb on + strand, within HMPREF1058_RS18670 at 104.011 kb on - strand, within HMPREF1058_RS18670 at 104.043 kb on + strand, within HMPREF1058_RS18670 at 104.043 kb on + strand at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.046 kb on - strand, within HMPREF1058_RS18670 at 104.160 kb on + strand at 104.160 kb on + strand at 104.160 kb on + strand at 104.161 kb on - strand at 104.162 kb on + strand at 104.162 kb on + strand at 104.162 kb on + strand at 104.164 kb on + strand at 104.183 kb on + strand at 104.187 kb on + strand at 104.190 kb on - strand at 104.265 kb on - strand at 104.265 kb on - strand at 104.276 kb on + strand at 104.276 kb on + strand at 104.277 kb on - strand at 104.277 kb on - strand at 104.285 kb on - strand at 104.287 kb on - strand at 104.424 kb on + strand at 104.424 kb on + strand at 104.424 kb on + strand at 104.425 kb on - strand at 104.425 kb on - strand at 104.487 kb on - strand at 104.536 kb on + strand at 104.536 kb on + strand at 104.546 kb on - strand at 104.546 kb on - strand at 104.549 kb on - strand at 104.600 kb on - strand at 104.696 kb on + strand, within HMPREF1058_RS18660 at 104.744 kb on + strand, within HMPREF1058_RS18660 at 104.859 kb on + strand at 104.860 kb on - strand at 104.869 kb on + strand at 104.935 kb on - strand at 104.963 kb on - strand at 104.963 kb on - strand at 105.146 kb on + strand, within HMPREF1058_RS18655 at 105.146 kb on + strand, within HMPREF1058_RS18655 at 105.211 kb on + strand, within HMPREF1058_RS18655 at 105.245 kb on + strand, within HMPREF1058_RS18655 at 105.246 kb on - strand, within HMPREF1058_RS18655 at 105.270 kb on + strand, within HMPREF1058_RS18655 at 105.302 kb on + strand, within HMPREF1058_RS18655 at 105.341 kb on + strand, within HMPREF1058_RS18655 at 105.341 kb on + strand, within HMPREF1058_RS18655 at 105.378 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.383 kb on - strand, within HMPREF1058_RS18655 at 105.383 kb on - strand, within HMPREF1058_RS18655 at 105.383 kb on - strand, within HMPREF1058_RS18655 at 105.420 kb on - strand, within HMPREF1058_RS18655 at 105.540 kb on + strand, within HMPREF1058_RS18655 at 105.540 kb on + strand, within HMPREF1058_RS18655 at 105.541 kb on - strand, within HMPREF1058_RS18655 at 105.543 kb on - strand, within HMPREF1058_RS18655 at 105.677 kb on - strand, within HMPREF1058_RS18655 at 105.712 kb on + strand, within HMPREF1058_RS18655 at 105.712 kb on + strand, within HMPREF1058_RS18655 at 105.827 kb on + strand, within HMPREF1058_RS18655 at 105.827 kb on + strand, within HMPREF1058_RS18655 at 105.828 kb on - strand, within HMPREF1058_RS18655 at 105.897 kb on - strand, within HMPREF1058_RS18655 at 105.899 kb on + strand, within HMPREF1058_RS18655 at 105.899 kb on + strand, within HMPREF1058_RS18655 at 106.101 kb on + strand, within HMPREF1058_RS18655 at 106.102 kb on - strand, within HMPREF1058_RS18655 at 106.145 kb on + strand, within HMPREF1058_RS18655 at 106.148 kb on + strand, within HMPREF1058_RS18655 at 106.151 kb on + strand, within HMPREF1058_RS18655 at 106.152 kb on - strand, within HMPREF1058_RS18655 at 106.208 kb on + strand, within HMPREF1058_RS18655 at 106.213 kb on - strand, within HMPREF1058_RS18655 at 106.213 kb on - strand, within HMPREF1058_RS18655 at 106.218 kb on - strand, within HMPREF1058_RS18655 at 106.382 kb on + strand at 106.383 kb on - strand at 106.404 kb on - strand at 106.443 kb on - strand at 106.454 kb on + strand at 106.476 kb on + strand at 106.476 kb on + strand at 106.488 kb on + strand at 106.488 kb on + strand at 106.491 kb on - strand at 106.513 kb on - strand at 106.627 kb on - strand at 106.634 kb on + strand at 106.701 kb on + strand at 106.737 kb on + strand at 106.737 kb on + strand at 106.738 kb on - strand at 106.757 kb on + strand, within HMPREF1058_RS18650 at 106.758 kb on - strand, within HMPREF1058_RS18650 at 106.872 kb on + strand, within HMPREF1058_RS18650 at 106.936 kb on + strand, within HMPREF1058_RS18650 at 106.936 kb on + strand, within HMPREF1058_RS18650 at 106.936 kb on + strand, within HMPREF1058_RS18650 at 106.937 kb on - strand, within HMPREF1058_RS18650 at 106.940 kb on + strand, within HMPREF1058_RS18650 at 106.941 kb on - strand, within HMPREF1058_RS18650 at 107.039 kb on - strand, within HMPREF1058_RS18650 at 107.056 kb on - strand, within HMPREF1058_RS18650 at 107.092 kb on - strand, within HMPREF1058_RS18650 at 107.093 kb on + strand, within HMPREF1058_RS18650 at 107.096 kb on + strand, within HMPREF1058_RS18650 at 107.096 kb on + strand, within HMPREF1058_RS18650 at 107.097 kb on - strand, within HMPREF1058_RS18650 at 107.097 kb on - strand, within HMPREF1058_RS18650 at 107.097 kb on - strand, within HMPREF1058_RS18650 at 107.172 kb on + strand, within HMPREF1058_RS18650 at 107.217 kb on - strand, within HMPREF1058_RS18650 at 107.217 kb on - strand, within HMPREF1058_RS18650 at 107.219 kb on + strand, within HMPREF1058_RS18650 at 107.220 kb on - strand, within HMPREF1058_RS18650 at 107.224 kb on + strand, within HMPREF1058_RS18650 at 107.224 kb on + strand, within HMPREF1058_RS18650 at 107.224 kb on + strand, within HMPREF1058_RS18650 at 107.225 kb on - strand, within HMPREF1058_RS18650 at 107.237 kb on - strand, within HMPREF1058_RS18650 at 107.268 kb on - strand, within HMPREF1058_RS18650 at 107.362 kb on + strand, within HMPREF1058_RS18650
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 103,869 - HMPREF1058_RS18670 0.71 -2.3 103,897 + HMPREF1058_RS18670 0.74 -5.2 103,991 + HMPREF1058_RS18670 0.83 -1.3 103,991 + HMPREF1058_RS18670 0.83 -3.4 103,992 - HMPREF1058_RS18670 0.83 -0.3 103,995 + HMPREF1058_RS18670 0.83 -3.9 103,995 + HMPREF1058_RS18670 0.83 -2.9 103,996 - HMPREF1058_RS18670 0.83 -1.6 103,996 - HMPREF1058_RS18670 0.83 -1.6 103,997 + HMPREF1058_RS18670 0.83 -2.5 103,998 - HMPREF1058_RS18670 0.83 -2.3 103,998 - HMPREF1058_RS18670 0.83 -3.1 103,998 - HMPREF1058_RS18670 0.83 -3.4 104,003 + HMPREF1058_RS18670 0.84 -4.5 104,003 + HMPREF1058_RS18670 0.84 -2.4 104,004 - HMPREF1058_RS18670 0.84 -3.3 104,010 + HMPREF1058_RS18670 0.84 -2.6 104,010 + HMPREF1058_RS18670 0.84 -2.6 104,011 - HMPREF1058_RS18670 0.84 -3.5 104,043 + HMPREF1058_RS18670 0.87 -1.6 104,043 + -0.3 104,044 - HMPREF1058_RS18670 0.87 -2.8 104,044 - HMPREF1058_RS18670 0.87 -3.2 104,044 - HMPREF1058_RS18670 0.87 -2.2 104,044 - HMPREF1058_RS18670 0.87 -1.9 104,046 - HMPREF1058_RS18670 0.88 -2.1 104,160 + -3.0 104,160 + -0.8 104,160 + -3.4 104,161 - -3.7 104,162 + -3.8 104,162 + -3.3 104,162 + -1.9 104,164 + -4.3 104,183 + -3.2 104,187 + -2.7 104,190 - -1.5 104,265 - -2.9 104,265 - -0.9 104,276 + -2.5 104,276 + -3.2 104,277 - -1.8 104,277 - +0.3 104,285 - -1.9 104,287 - -1.3 104,424 + -2.1 104,424 + -4.4 104,424 + -1.2 104,425 - -0.9 104,425 - +0.8 104,487 - +1.1 104,536 + -0.3 104,536 + -1.9 104,546 - +1.4 104,546 - -0.9 104,549 - +1.2 104,600 - -1.9 104,696 + HMPREF1058_RS18660 0.36 -3.0 104,744 + HMPREF1058_RS18660 0.55 -2.1 104,859 + -4.0 104,860 - -2.5 104,869 + -2.6 104,935 - -2.3 104,963 - -4.1 104,963 - -3.3 105,146 + HMPREF1058_RS18655 0.18 -3.0 105,146 + HMPREF1058_RS18655 0.18 -1.9 105,211 + HMPREF1058_RS18655 0.22 -4.0 105,245 + HMPREF1058_RS18655 0.25 -2.1 105,246 - HMPREF1058_RS18655 0.25 -3.2 105,270 + HMPREF1058_RS18655 0.26 -2.2 105,302 + HMPREF1058_RS18655 0.28 -3.0 105,341 + HMPREF1058_RS18655 0.31 -3.9 105,341 + HMPREF1058_RS18655 0.31 -3.8 105,378 + HMPREF1058_RS18655 0.33 -0.3 105,382 + HMPREF1058_RS18655 0.33 -4.0 105,382 + HMPREF1058_RS18655 0.33 -4.4 105,382 + HMPREF1058_RS18655 0.33 -3.2 105,382 + HMPREF1058_RS18655 0.33 -2.9 105,382 + HMPREF1058_RS18655 0.33 -2.6 105,382 + HMPREF1058_RS18655 0.33 -3.9 105,383 - HMPREF1058_RS18655 0.34 -1.9 105,383 - HMPREF1058_RS18655 0.34 -3.9 105,383 - HMPREF1058_RS18655 0.34 -0.9 105,420 - HMPREF1058_RS18655 0.36 -2.9 105,540 + HMPREF1058_RS18655 0.44 -3.3 105,540 + HMPREF1058_RS18655 0.44 -2.3 105,541 - HMPREF1058_RS18655 0.44 -3.4 105,543 - HMPREF1058_RS18655 0.44 -2.6 105,677 - HMPREF1058_RS18655 0.53 -1.6 105,712 + HMPREF1058_RS18655 0.55 -2.9 105,712 + HMPREF1058_RS18655 0.55 -2.9 105,827 + HMPREF1058_RS18655 0.62 -1.3 105,827 + HMPREF1058_RS18655 0.62 -0.9 105,828 - HMPREF1058_RS18655 0.62 -1.5 105,897 - HMPREF1058_RS18655 0.67 -2.4 105,899 + HMPREF1058_RS18655 0.67 -2.8 105,899 + HMPREF1058_RS18655 0.67 -0.9 106,101 + HMPREF1058_RS18655 0.80 -0.9 106,102 - HMPREF1058_RS18655 0.80 -1.6 106,145 + HMPREF1058_RS18655 0.83 -2.6 106,148 + HMPREF1058_RS18655 0.83 -1.6 106,151 + HMPREF1058_RS18655 0.84 -1.3 106,152 - HMPREF1058_RS18655 0.84 +0.1 106,208 + HMPREF1058_RS18655 0.87 -2.5 106,213 - HMPREF1058_RS18655 0.88 -2.6 106,213 - HMPREF1058_RS18655 0.88 -1.9 106,218 - HMPREF1058_RS18655 0.88 -0.9 106,382 + -2.9 106,383 - -1.3 106,404 - -3.6 106,443 - -0.3 106,454 + -1.3 106,476 + -0.9 106,476 + -3.0 106,488 + -1.1 106,488 + -0.3 106,491 - +1.5 106,513 - +2.6 106,627 - +2.4 106,634 + +0.1 106,701 + -0.7 106,737 + -0.1 106,737 + +0.1 106,738 - +1.3 106,757 + HMPREF1058_RS18650 0.10 -0.6 106,758 - HMPREF1058_RS18650 0.10 +0.6 106,872 + HMPREF1058_RS18650 0.18 -0.6 106,936 + HMPREF1058_RS18650 0.22 -1.1 106,936 + HMPREF1058_RS18650 0.22 -3.1 106,936 + HMPREF1058_RS18650 0.22 +0.4 106,937 - HMPREF1058_RS18650 0.22 -2.1 106,940 + HMPREF1058_RS18650 0.22 +2.5 106,941 - HMPREF1058_RS18650 0.22 +1.2 107,039 - HMPREF1058_RS18650 0.28 +0.8 107,056 - HMPREF1058_RS18650 0.30 +0.3 107,092 - HMPREF1058_RS18650 0.32 +0.2 107,093 + HMPREF1058_RS18650 0.32 -2.0 107,096 + HMPREF1058_RS18650 0.32 +3.1 107,096 + HMPREF1058_RS18650 0.32 +0.7 107,097 - HMPREF1058_RS18650 0.32 +0.7 107,097 - HMPREF1058_RS18650 0.32 -1.3 107,097 - HMPREF1058_RS18650 0.32 -2.9 107,172 + HMPREF1058_RS18650 0.37 +1.1 107,217 - HMPREF1058_RS18650 0.40 +0.5 107,217 - HMPREF1058_RS18650 0.40 -0.8 107,219 + HMPREF1058_RS18650 0.40 +0.1 107,220 - HMPREF1058_RS18650 0.40 -0.8 107,224 + HMPREF1058_RS18650 0.40 +0.4 107,224 + HMPREF1058_RS18650 0.40 +2.0 107,224 + HMPREF1058_RS18650 0.40 +0.1 107,225 - HMPREF1058_RS18650 0.40 +1.1 107,237 - HMPREF1058_RS18650 0.41 +0.9 107,268 - HMPREF1058_RS18650 0.43 +0.9 107,362 + HMPREF1058_RS18650 0.49 +1.1
Or see this region's nucleotide sequence