Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18040

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18045 and HMPREF1058_RS18040 are separated by 154 nucleotidesHMPREF1058_RS18040 and HMPREF1058_RS18035 are separated by 295 nucleotides HMPREF1058_RS18045: HMPREF1058_RS18045 - cytochrome ubiquinol oxidase subunit I, at 269,433 to 270,935 _RS18045 HMPREF1058_RS18040: HMPREF1058_RS18040 - cytochrome d ubiquinol oxidase subunit II, at 271,090 to 272,235 _RS18040 HMPREF1058_RS18035: HMPREF1058_RS18035 - 6-phosphogluconolactonase, at 272,531 to 273,235 _RS18035 Position (kb) 271 272 273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 270.176 kb on - strand, within HMPREF1058_RS18045at 270.318 kb on + strand, within HMPREF1058_RS18045at 270.322 kb on + strand, within HMPREF1058_RS18045at 270.372 kb on - strand, within HMPREF1058_RS18045at 270.528 kb on + strand, within HMPREF1058_RS18045at 270.530 kb on + strand, within HMPREF1058_RS18045at 270.530 kb on + strand, within HMPREF1058_RS18045at 270.562 kb on + strand, within HMPREF1058_RS18045at 270.629 kb on + strand, within HMPREF1058_RS18045at 270.630 kb on - strand, within HMPREF1058_RS18045at 270.630 kb on - strand, within HMPREF1058_RS18045at 270.631 kb on + strand, within HMPREF1058_RS18045at 270.631 kb on + strand, within HMPREF1058_RS18045at 270.679 kb on + strand, within HMPREF1058_RS18045at 270.780 kb on - strand, within HMPREF1058_RS18045at 270.780 kb on - strand, within HMPREF1058_RS18045at 270.833 kb on + strandat 270.884 kb on - strandat 270.884 kb on - strandat 270.927 kb on - strandat 270.976 kb on + strandat 270.990 kb on - strandat 270.999 kb on + strandat 271.000 kb on - strandat 271.081 kb on + strandat 271.082 kb on - strandat 271.098 kb on + strandat 271.100 kb on + strandat 271.127 kb on + strandat 271.127 kb on + strandat 271.318 kb on + strand, within HMPREF1058_RS18040at 271.319 kb on - strand, within HMPREF1058_RS18040at 271.434 kb on + strand, within HMPREF1058_RS18040at 271.434 kb on + strand, within HMPREF1058_RS18040at 271.439 kb on - strand, within HMPREF1058_RS18040at 271.465 kb on - strand, within HMPREF1058_RS18040at 271.470 kb on - strand, within HMPREF1058_RS18040at 271.743 kb on + strand, within HMPREF1058_RS18040at 271.744 kb on - strand, within HMPREF1058_RS18040at 271.761 kb on - strand, within HMPREF1058_RS18040at 271.832 kb on - strand, within HMPREF1058_RS18040at 271.833 kb on + strand, within HMPREF1058_RS18040at 271.844 kb on - strand, within HMPREF1058_RS18040at 271.962 kb on + strand, within HMPREF1058_RS18040at 271.997 kb on + strand, within HMPREF1058_RS18040at 272.000 kb on + strand, within HMPREF1058_RS18040at 272.025 kb on + strand, within HMPREF1058_RS18040at 272.025 kb on + strand, within HMPREF1058_RS18040at 272.026 kb on - strand, within HMPREF1058_RS18040at 272.028 kb on + strand, within HMPREF1058_RS18040at 272.033 kb on - strand, within HMPREF1058_RS18040at 272.038 kb on + strandat 272.122 kb on + strandat 272.138 kb on + strandat 272.155 kb on + strandat 272.158 kb on - strandat 272.160 kb on + strandat 272.164 kb on + strandat 272.181 kb on - strandat 272.196 kb on + strandat 272.230 kb on + strandat 272.253 kb on + strandat 272.253 kb on + strandat 272.342 kb on + strandat 272.342 kb on + strandat 272.343 kb on - strandat 272.363 kb on - strandat 272.460 kb on + strandat 272.461 kb on - strandat 272.461 kb on - strandat 272.469 kb on + strandat 272.470 kb on - strandat 272.498 kb on - strandat 272.520 kb on + strandat 272.529 kb on + strandat 272.533 kb on - strandat 272.538 kb on - strandat 272.550 kb on + strandat 272.551 kb on - strandat 272.564 kb on - strandat 272.582 kb on - strandat 272.584 kb on - strandat 272.584 kb on - strandat 272.672 kb on - strand, within HMPREF1058_RS18035at 272.710 kb on + strand, within HMPREF1058_RS18035at 272.728 kb on - strand, within HMPREF1058_RS18035at 272.748 kb on + strand, within HMPREF1058_RS18035at 272.800 kb on + strand, within HMPREF1058_RS18035at 272.801 kb on - strand, within HMPREF1058_RS18035at 272.801 kb on - strand, within HMPREF1058_RS18035at 272.826 kb on - strand, within HMPREF1058_RS18035at 272.889 kb on + strand, within HMPREF1058_RS18035at 272.889 kb on + strand, within HMPREF1058_RS18035at 272.938 kb on - strand, within HMPREF1058_RS18035at 272.938 kb on - strand, within HMPREF1058_RS18035at 272.957 kb on + strand, within HMPREF1058_RS18035at 272.958 kb on - strand, within HMPREF1058_RS18035at 272.958 kb on - strand, within HMPREF1058_RS18035at 272.963 kb on - strand, within HMPREF1058_RS18035at 273.066 kb on + strand, within HMPREF1058_RS18035at 273.066 kb on + strand, within HMPREF1058_RS18035at 273.066 kb on + strand, within HMPREF1058_RS18035at 273.067 kb on - strand, within HMPREF1058_RS18035at 273.113 kb on - strand, within HMPREF1058_RS18035at 273.137 kb on - strand, within HMPREF1058_RS18035at 273.173 kb on + strandat 273.174 kb on - strandat 273.176 kb on - strandat 273.176 kb on - strandat 273.183 kb on - strandat 273.204 kb on - strandat 273.217 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
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270,176 - HMPREF1058_RS18045 0.49 -1.3
270,318 + HMPREF1058_RS18045 0.59 -3.8
270,322 + HMPREF1058_RS18045 0.59 -1.0
270,372 - HMPREF1058_RS18045 0.62 -0.7
270,528 + HMPREF1058_RS18045 0.73 +1.2
270,530 + HMPREF1058_RS18045 0.73 -2.1
270,530 + HMPREF1058_RS18045 0.73 -0.4
270,562 + HMPREF1058_RS18045 0.75 -1.6
270,629 + HMPREF1058_RS18045 0.80 -1.5
270,630 - HMPREF1058_RS18045 0.80 -1.3
270,630 - HMPREF1058_RS18045 0.80 -0.9
270,631 + HMPREF1058_RS18045 0.80 +0.9
270,631 + HMPREF1058_RS18045 0.80 -1.2
270,679 + HMPREF1058_RS18045 0.83 -2.6
270,780 - HMPREF1058_RS18045 0.90 -0.8
270,780 - HMPREF1058_RS18045 0.90 +0.0
270,833 + -2.3
270,884 - -1.5
270,884 - +0.6
270,927 - -2.4
270,976 + +0.7
270,990 - -2.8
270,999 + +1.2
271,000 - -0.4
271,081 + -2.0
271,082 - -2.2
271,098 + -4.3
271,100 + +0.3
271,127 + -0.7
271,127 + -2.3
271,318 + HMPREF1058_RS18040 0.20 +1.1
271,319 - HMPREF1058_RS18040 0.20 -2.7
271,434 + HMPREF1058_RS18040 0.30 -2.5
271,434 + HMPREF1058_RS18040 0.30 -3.2
271,439 - HMPREF1058_RS18040 0.30 -1.1
271,465 - HMPREF1058_RS18040 0.33 -1.4
271,470 - HMPREF1058_RS18040 0.33 -1.0
271,743 + HMPREF1058_RS18040 0.57 -1.7
271,744 - HMPREF1058_RS18040 0.57 -1.1
271,761 - HMPREF1058_RS18040 0.59 -0.7
271,832 - HMPREF1058_RS18040 0.65 -1.5
271,833 + HMPREF1058_RS18040 0.65 -2.2
271,844 - HMPREF1058_RS18040 0.66 -1.6
271,962 + HMPREF1058_RS18040 0.76 -1.8
271,997 + HMPREF1058_RS18040 0.79 -1.0
272,000 + HMPREF1058_RS18040 0.79 -1.9
272,025 + HMPREF1058_RS18040 0.82 -3.4
272,025 + HMPREF1058_RS18040 0.82 -0.9
272,026 - HMPREF1058_RS18040 0.82 -1.3
272,028 + HMPREF1058_RS18040 0.82 -1.2
272,033 - HMPREF1058_RS18040 0.82 -1.3
272,038 + +0.6
272,122 + -2.2
272,138 + -3.4
272,155 + -0.3
272,158 - -2.8
272,160 + -0.6
272,164 + -2.0
272,181 - -0.4
272,196 + +0.9
272,230 + +0.5
272,253 + +1.5
272,253 + +1.0
272,342 + +0.1
272,342 + +1.6
272,343 - -0.6
272,363 - +1.3
272,460 + -0.6
272,461 - +1.3
272,461 - -3.1
272,469 + +0.5
272,470 - -1.4
272,498 - -3.4
272,520 + -1.6
272,529 + -2.1
272,533 - +0.1
272,538 - +0.8
272,550 + +1.5
272,551 - +1.0
272,564 - -0.9
272,582 - -1.0
272,584 - -3.6
272,584 - -0.7
272,672 - HMPREF1058_RS18035 0.20 +0.6
272,710 + HMPREF1058_RS18035 0.25 -1.7
272,728 - HMPREF1058_RS18035 0.28 +0.9
272,748 + HMPREF1058_RS18035 0.31 -4.1
272,800 + HMPREF1058_RS18035 0.38 +0.6
272,801 - HMPREF1058_RS18035 0.38 +1.1
272,801 - HMPREF1058_RS18035 0.38 -1.9
272,826 - HMPREF1058_RS18035 0.42 +0.1
272,889 + HMPREF1058_RS18035 0.51 -2.6
272,889 + HMPREF1058_RS18035 0.51 -0.7
272,938 - HMPREF1058_RS18035 0.58 +2.8
272,938 - HMPREF1058_RS18035 0.58 +0.7
272,957 + HMPREF1058_RS18035 0.60 -1.1
272,958 - HMPREF1058_RS18035 0.61 +2.0
272,958 - HMPREF1058_RS18035 0.61 -3.9
272,963 - HMPREF1058_RS18035 0.61 +0.1
273,066 + HMPREF1058_RS18035 0.76 +1.0
273,066 + HMPREF1058_RS18035 0.76 +0.9
273,066 + HMPREF1058_RS18035 0.76 +0.7
273,067 - HMPREF1058_RS18035 0.76 +0.9
273,113 - HMPREF1058_RS18035 0.83 -0.8
273,137 - HMPREF1058_RS18035 0.86 -1.1
273,173 + -1.8
273,174 - -1.3
273,176 - +1.2
273,176 - +0.8
273,183 - +0.9
273,204 - +1.3
273,217 - -0.2

Or see this region's nucleotide sequence