Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09140 and HMPREF1058_RS09135 overlap by 1 nucleotides HMPREF1058_RS09135 and HMPREF1058_RS09130 are separated by 223 nucleotides
HMPREF1058_RS09140: HMPREF1058_RS09140 - creatininase family protein, at 930,263 to 931,018
_RS09140
HMPREF1058_RS09135: HMPREF1058_RS09135 - iron-containing alcohol dehydrogenase, at 931,018 to 932,190
_RS09135
HMPREF1058_RS09130: HMPREF1058_RS09130 - ATP-binding protein, at 932,414 to 933,317
_RS09130
Position (kb) 931
932
933 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 930.032 kb on + strand at 930.111 kb on + strand at 930.115 kb on + strand at 930.115 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.121 kb on + strand at 930.122 kb on - strand at 930.123 kb on + strand at 930.133 kb on + strand at 930.133 kb on + strand at 930.161 kb on - strand at 930.161 kb on - strand at 930.166 kb on - strand at 930.213 kb on - strand at 930.267 kb on + strand at 930.277 kb on + strand at 930.278 kb on - strand at 930.372 kb on - strand, within HMPREF1058_RS09140 at 930.558 kb on + strand, within HMPREF1058_RS09140 at 930.565 kb on + strand, within HMPREF1058_RS09140 at 930.635 kb on + strand, within HMPREF1058_RS09140 at 930.636 kb on - strand, within HMPREF1058_RS09140 at 930.636 kb on - strand, within HMPREF1058_RS09140 at 930.652 kb on + strand, within HMPREF1058_RS09140 at 930.653 kb on - strand, within HMPREF1058_RS09140 at 930.704 kb on + strand, within HMPREF1058_RS09140 at 930.867 kb on - strand, within HMPREF1058_RS09140 at 930.960 kb on + strand at 930.974 kb on + strand at 930.975 kb on - strand at 931.019 kb on + strand at 931.101 kb on + strand at 931.101 kb on + strand at 931.304 kb on + strand, within HMPREF1058_RS09135 at 931.305 kb on - strand, within HMPREF1058_RS09135 at 931.493 kb on + strand, within HMPREF1058_RS09135 at 931.493 kb on + strand, within HMPREF1058_RS09135 at 931.494 kb on - strand, within HMPREF1058_RS09135 at 931.500 kb on - strand, within HMPREF1058_RS09135 at 931.519 kb on + strand, within HMPREF1058_RS09135 at 931.520 kb on - strand, within HMPREF1058_RS09135 at 931.645 kb on + strand, within HMPREF1058_RS09135 at 931.650 kb on + strand, within HMPREF1058_RS09135 at 931.654 kb on + strand, within HMPREF1058_RS09135 at 931.655 kb on - strand, within HMPREF1058_RS09135 at 931.655 kb on - strand, within HMPREF1058_RS09135 at 931.758 kb on + strand, within HMPREF1058_RS09135 at 931.763 kb on - strand, within HMPREF1058_RS09135 at 931.823 kb on + strand, within HMPREF1058_RS09135 at 931.823 kb on + strand, within HMPREF1058_RS09135 at 931.823 kb on + strand, within HMPREF1058_RS09135 at 931.833 kb on - strand, within HMPREF1058_RS09135 at 931.984 kb on - strand, within HMPREF1058_RS09135 at 931.984 kb on - strand, within HMPREF1058_RS09135 at 931.988 kb on + strand, within HMPREF1058_RS09135 at 932.017 kb on + strand, within HMPREF1058_RS09135 at 932.049 kb on - strand, within HMPREF1058_RS09135 at 932.116 kb on + strand at 932.162 kb on + strand at 932.162 kb on + strand at 932.163 kb on - strand at 932.163 kb on - strand at 932.163 kb on - strand at 932.169 kb on + strand at 932.373 kb on + strand at 932.375 kb on + strand at 932.495 kb on + strand at 932.496 kb on - strand at 932.529 kb on + strand, within HMPREF1058_RS09130 at 932.529 kb on + strand, within HMPREF1058_RS09130 at 932.530 kb on - strand, within HMPREF1058_RS09130 at 932.543 kb on + strand, within HMPREF1058_RS09130 at 932.543 kb on + strand, within HMPREF1058_RS09130 at 932.545 kb on + strand, within HMPREF1058_RS09130 at 932.546 kb on - strand, within HMPREF1058_RS09130 at 932.546 kb on - strand, within HMPREF1058_RS09130 at 932.560 kb on - strand, within HMPREF1058_RS09130 at 932.607 kb on + strand, within HMPREF1058_RS09130 at 932.608 kb on - strand, within HMPREF1058_RS09130 at 932.617 kb on - strand, within HMPREF1058_RS09130 at 932.620 kb on + strand, within HMPREF1058_RS09130 at 932.719 kb on + strand, within HMPREF1058_RS09130 at 932.720 kb on - strand, within HMPREF1058_RS09130 at 932.746 kb on + strand, within HMPREF1058_RS09130 at 932.747 kb on - strand, within HMPREF1058_RS09130 at 932.752 kb on + strand, within HMPREF1058_RS09130 at 932.762 kb on + strand, within HMPREF1058_RS09130 at 932.853 kb on + strand, within HMPREF1058_RS09130 at 932.859 kb on - strand, within HMPREF1058_RS09130 at 932.876 kb on - strand, within HMPREF1058_RS09130 at 932.884 kb on + strand, within HMPREF1058_RS09130 at 932.920 kb on - strand, within HMPREF1058_RS09130 at 932.951 kb on + strand, within HMPREF1058_RS09130 at 932.961 kb on + strand, within HMPREF1058_RS09130 at 932.964 kb on + strand, within HMPREF1058_RS09130 at 933.043 kb on + strand, within HMPREF1058_RS09130 at 933.044 kb on - strand, within HMPREF1058_RS09130 at 933.070 kb on - strand, within HMPREF1058_RS09130 at 933.076 kb on + strand, within HMPREF1058_RS09130 at 933.078 kb on + strand, within HMPREF1058_RS09130 at 933.080 kb on + strand, within HMPREF1058_RS09130 at 933.119 kb on + strand, within HMPREF1058_RS09130 at 933.142 kb on - strand, within HMPREF1058_RS09130 at 933.156 kb on + strand, within HMPREF1058_RS09130 at 933.156 kb on + strand, within HMPREF1058_RS09130 at 933.157 kb on - strand, within HMPREF1058_RS09130
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 930,032 + +0.9 930,111 + -0.8 930,115 + -0.6 930,115 + +0.3 930,117 + +0.9 930,117 + +3.0 930,117 + +0.1 930,121 + +2.7 930,122 - +2.7 930,123 + +2.1 930,133 + +0.3 930,133 + +1.9 930,161 - +1.1 930,161 - +2.2 930,166 - -1.2 930,213 - -0.0 930,267 + +0.9 930,277 + -0.9 930,278 - -0.1 930,372 - HMPREF1058_RS09140 0.14 -1.1 930,558 + HMPREF1058_RS09140 0.39 -0.0 930,565 + HMPREF1058_RS09140 0.40 +1.8 930,635 + HMPREF1058_RS09140 0.49 -0.9 930,636 - HMPREF1058_RS09140 0.49 +1.2 930,636 - HMPREF1058_RS09140 0.49 -1.6 930,652 + HMPREF1058_RS09140 0.51 +0.5 930,653 - HMPREF1058_RS09140 0.52 +1.2 930,704 + HMPREF1058_RS09140 0.58 -0.1 930,867 - HMPREF1058_RS09140 0.80 -1.7 930,960 + +3.4 930,974 + -1.8 930,975 - -0.0 931,019 + +0.7 931,101 + -2.1 931,101 + -3.5 931,304 + HMPREF1058_RS09135 0.24 -0.3 931,305 - HMPREF1058_RS09135 0.24 -1.5 931,493 + HMPREF1058_RS09135 0.40 -2.3 931,493 + HMPREF1058_RS09135 0.40 -2.8 931,494 - HMPREF1058_RS09135 0.41 +1.0 931,500 - HMPREF1058_RS09135 0.41 -0.9 931,519 + HMPREF1058_RS09135 0.43 -0.3 931,520 - HMPREF1058_RS09135 0.43 -1.4 931,645 + HMPREF1058_RS09135 0.53 -1.2 931,650 + HMPREF1058_RS09135 0.54 +2.0 931,654 + HMPREF1058_RS09135 0.54 -1.9 931,655 - HMPREF1058_RS09135 0.54 +1.3 931,655 - HMPREF1058_RS09135 0.54 +0.6 931,758 + HMPREF1058_RS09135 0.63 +0.6 931,763 - HMPREF1058_RS09135 0.64 -0.8 931,823 + HMPREF1058_RS09135 0.69 +0.3 931,823 + HMPREF1058_RS09135 0.69 +0.1 931,823 + HMPREF1058_RS09135 0.69 +0.2 931,833 - HMPREF1058_RS09135 0.69 -0.8 931,984 - HMPREF1058_RS09135 0.82 -1.3 931,984 - HMPREF1058_RS09135 0.82 -2.3 931,988 + HMPREF1058_RS09135 0.83 -0.7 932,017 + HMPREF1058_RS09135 0.85 -1.5 932,049 - HMPREF1058_RS09135 0.88 -3.2 932,116 + +1.7 932,162 + +0.9 932,162 + +0.2 932,163 - -2.6 932,163 - -1.7 932,163 - -0.0 932,169 + +2.3 932,373 + -3.0 932,375 + -4.6 932,495 + -1.2 932,496 - +0.5 932,529 + HMPREF1058_RS09130 0.13 -0.0 932,529 + HMPREF1058_RS09130 0.13 +1.8 932,530 - HMPREF1058_RS09130 0.13 +1.6 932,543 + HMPREF1058_RS09130 0.14 +1.2 932,543 + HMPREF1058_RS09130 0.14 +0.2 932,545 + HMPREF1058_RS09130 0.14 +2.5 932,546 - HMPREF1058_RS09130 0.15 +0.9 932,546 - HMPREF1058_RS09130 0.15 +1.1 932,560 - HMPREF1058_RS09130 0.16 +0.3 932,607 + HMPREF1058_RS09130 0.21 -3.5 932,608 - HMPREF1058_RS09130 0.21 +0.2 932,617 - HMPREF1058_RS09130 0.22 -1.2 932,620 + HMPREF1058_RS09130 0.23 +0.6 932,719 + HMPREF1058_RS09130 0.34 +1.7 932,720 - HMPREF1058_RS09130 0.34 +1.3 932,746 + HMPREF1058_RS09130 0.37 +1.1 932,747 - HMPREF1058_RS09130 0.37 +1.7 932,752 + HMPREF1058_RS09130 0.37 +1.8 932,762 + HMPREF1058_RS09130 0.38 +1.2 932,853 + HMPREF1058_RS09130 0.49 -0.7 932,859 - HMPREF1058_RS09130 0.49 +0.4 932,876 - HMPREF1058_RS09130 0.51 -3.7 932,884 + HMPREF1058_RS09130 0.52 +0.6 932,920 - HMPREF1058_RS09130 0.56 -0.4 932,951 + HMPREF1058_RS09130 0.59 +0.3 932,961 + HMPREF1058_RS09130 0.61 -0.6 932,964 + HMPREF1058_RS09130 0.61 +0.3 933,043 + HMPREF1058_RS09130 0.70 +1.0 933,044 - HMPREF1058_RS09130 0.70 -1.9 933,070 - HMPREF1058_RS09130 0.73 -0.3 933,076 + HMPREF1058_RS09130 0.73 +0.5 933,078 + HMPREF1058_RS09130 0.73 -2.5 933,080 + HMPREF1058_RS09130 0.74 -2.7 933,119 + HMPREF1058_RS09130 0.78 -3.7 933,142 - HMPREF1058_RS09130 0.81 +0.8 933,156 + HMPREF1058_RS09130 0.82 +1.3 933,156 + HMPREF1058_RS09130 0.82 -2.4 933,157 - HMPREF1058_RS09130 0.82 -3.8
Or see this region's nucleotide sequence