Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08140 and HMPREF1058_RS08135 are separated by 95 nucleotides HMPREF1058_RS08135 and HMPREF1058_RS08130 are separated by 126 nucleotides
HMPREF1058_RS08140: HMPREF1058_RS08140 - glycoside hydrolase family protein, at 38,563 to 40,176
_RS08140
HMPREF1058_RS08135: HMPREF1058_RS08135 - glycoside hydrolase, at 40,272 to 41,657
_RS08135
HMPREF1058_RS08130: HMPREF1058_RS08130 - glycoside hydrolase family 127 protein, at 41,784 to 43,706
_RS08130
Position (kb) 40
41
42 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 39.385 kb on + strand, within HMPREF1058_RS08140 at 39.385 kb on + strand, within HMPREF1058_RS08140 at 39.386 kb on - strand, within HMPREF1058_RS08140 at 39.386 kb on - strand, within HMPREF1058_RS08140 at 39.398 kb on + strand, within HMPREF1058_RS08140 at 39.439 kb on + strand, within HMPREF1058_RS08140 at 39.543 kb on + strand, within HMPREF1058_RS08140 at 39.544 kb on - strand, within HMPREF1058_RS08140 at 39.544 kb on - strand, within HMPREF1058_RS08140 at 39.562 kb on - strand, within HMPREF1058_RS08140 at 39.562 kb on - strand, within HMPREF1058_RS08140 at 39.584 kb on + strand, within HMPREF1058_RS08140 at 39.584 kb on + strand, within HMPREF1058_RS08140 at 39.621 kb on + strand, within HMPREF1058_RS08140 at 39.840 kb on + strand, within HMPREF1058_RS08140 at 39.840 kb on + strand, within HMPREF1058_RS08140 at 39.859 kb on - strand, within HMPREF1058_RS08140 at 39.859 kb on - strand, within HMPREF1058_RS08140 at 39.866 kb on - strand, within HMPREF1058_RS08140 at 39.959 kb on + strand, within HMPREF1058_RS08140 at 40.014 kb on - strand, within HMPREF1058_RS08140 at 40.100 kb on + strand at 40.101 kb on - strand at 40.104 kb on - strand at 40.168 kb on - strand at 40.181 kb on + strand at 40.182 kb on - strand at 40.211 kb on + strand at 40.380 kb on + strand at 40.382 kb on + strand at 40.382 kb on + strand at 40.383 kb on - strand at 40.383 kb on - strand at 40.383 kb on - strand at 40.383 kb on - strand at 40.383 kb on - strand at 40.433 kb on + strand, within HMPREF1058_RS08135 at 40.460 kb on - strand, within HMPREF1058_RS08135 at 40.460 kb on - strand, within HMPREF1058_RS08135 at 40.478 kb on - strand, within HMPREF1058_RS08135 at 40.569 kb on - strand, within HMPREF1058_RS08135 at 40.570 kb on + strand, within HMPREF1058_RS08135 at 40.570 kb on + strand, within HMPREF1058_RS08135 at 40.571 kb on - strand, within HMPREF1058_RS08135 at 40.571 kb on - strand, within HMPREF1058_RS08135 at 40.575 kb on + strand, within HMPREF1058_RS08135 at 40.580 kb on - strand, within HMPREF1058_RS08135 at 40.586 kb on + strand, within HMPREF1058_RS08135 at 40.587 kb on - strand, within HMPREF1058_RS08135 at 40.604 kb on + strand, within HMPREF1058_RS08135 at 40.605 kb on - strand, within HMPREF1058_RS08135 at 40.649 kb on + strand, within HMPREF1058_RS08135 at 40.649 kb on + strand, within HMPREF1058_RS08135 at 40.726 kb on - strand, within HMPREF1058_RS08135 at 40.862 kb on + strand, within HMPREF1058_RS08135 at 40.863 kb on - strand, within HMPREF1058_RS08135 at 40.863 kb on - strand, within HMPREF1058_RS08135 at 40.877 kb on + strand, within HMPREF1058_RS08135 at 40.877 kb on + strand, within HMPREF1058_RS08135 at 40.965 kb on + strand, within HMPREF1058_RS08135 at 40.966 kb on - strand, within HMPREF1058_RS08135 at 41.021 kb on + strand, within HMPREF1058_RS08135 at 41.122 kb on - strand, within HMPREF1058_RS08135 at 41.124 kb on - strand, within HMPREF1058_RS08135 at 41.124 kb on - strand, within HMPREF1058_RS08135 at 41.124 kb on - strand, within HMPREF1058_RS08135 at 41.324 kb on + strand, within HMPREF1058_RS08135 at 41.324 kb on + strand, within HMPREF1058_RS08135 at 41.324 kb on + strand, within HMPREF1058_RS08135 at 41.324 kb on + strand, within HMPREF1058_RS08135 at 41.324 kb on + strand, within HMPREF1058_RS08135 at 41.324 kb on + strand, within HMPREF1058_RS08135 at 41.324 kb on + strand, within HMPREF1058_RS08135 at 41.324 kb on + strand, within HMPREF1058_RS08135 at 41.325 kb on - strand, within HMPREF1058_RS08135 at 41.332 kb on + strand, within HMPREF1058_RS08135 at 41.333 kb on - strand, within HMPREF1058_RS08135 at 41.439 kb on - strand, within HMPREF1058_RS08135 at 41.439 kb on - strand, within HMPREF1058_RS08135 at 41.492 kb on + strand, within HMPREF1058_RS08135 at 41.496 kb on + strand, within HMPREF1058_RS08135 at 41.497 kb on - strand, within HMPREF1058_RS08135 at 41.506 kb on + strand, within HMPREF1058_RS08135 at 41.561 kb on + strand at 41.565 kb on - strand at 41.632 kb on - strand at 41.656 kb on - strand at 41.672 kb on + strand at 41.674 kb on + strand at 41.684 kb on + strand at 41.684 kb on + strand at 41.685 kb on - strand at 41.734 kb on - strand at 41.736 kb on + strand at 41.741 kb on - strand at 41.743 kb on + strand at 41.744 kb on - strand at 41.768 kb on + strand at 41.768 kb on + strand at 42.017 kb on + strand, within HMPREF1058_RS08130 at 42.017 kb on + strand, within HMPREF1058_RS08130 at 42.018 kb on - strand, within HMPREF1058_RS08130 at 42.018 kb on - strand, within HMPREF1058_RS08130 at 42.064 kb on - strand, within HMPREF1058_RS08130 at 42.159 kb on + strand, within HMPREF1058_RS08130 at 42.160 kb on - strand, within HMPREF1058_RS08130 at 42.160 kb on - strand, within HMPREF1058_RS08130 at 42.160 kb on - strand, within HMPREF1058_RS08130 at 42.318 kb on + strand, within HMPREF1058_RS08130 at 42.350 kb on - strand, within HMPREF1058_RS08130 at 42.364 kb on - strand, within HMPREF1058_RS08130 at 42.417 kb on + strand, within HMPREF1058_RS08130 at 42.499 kb on - strand, within HMPREF1058_RS08130 at 42.501 kb on - strand, within HMPREF1058_RS08130 at 42.615 kb on - strand, within HMPREF1058_RS08130 at 42.621 kb on - strand, within HMPREF1058_RS08130 at 42.621 kb on - strand, within HMPREF1058_RS08130
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 39,385 + HMPREF1058_RS08140 0.51 -0.1 39,385 + HMPREF1058_RS08140 0.51 -0.2 39,386 - HMPREF1058_RS08140 0.51 +1.4 39,386 - HMPREF1058_RS08140 0.51 -0.6 39,398 + HMPREF1058_RS08140 0.52 -0.1 39,439 + HMPREF1058_RS08140 0.54 -3.4 39,543 + HMPREF1058_RS08140 0.61 +0.8 39,544 - HMPREF1058_RS08140 0.61 -0.0 39,544 - HMPREF1058_RS08140 0.61 -0.5 39,562 - HMPREF1058_RS08140 0.62 +2.9 39,562 - HMPREF1058_RS08140 0.62 -0.4 39,584 + HMPREF1058_RS08140 0.63 -0.8 39,584 + HMPREF1058_RS08140 0.63 -1.1 39,621 + HMPREF1058_RS08140 0.66 -2.1 39,840 + HMPREF1058_RS08140 0.79 -2.3 39,840 + HMPREF1058_RS08140 0.79 +1.3 39,859 - HMPREF1058_RS08140 0.80 +0.5 39,859 - HMPREF1058_RS08140 0.80 -2.1 39,866 - HMPREF1058_RS08140 0.81 +0.9 39,959 + HMPREF1058_RS08140 0.86 -0.8 40,014 - HMPREF1058_RS08140 0.90 -2.1 40,100 + +0.8 40,101 - -0.0 40,104 - +1.0 40,168 - -0.3 40,181 + +0.4 40,182 - -2.0 40,211 + -0.6 40,380 + -5.1 40,382 + -1.7 40,382 + -0.5 40,383 - +1.3 40,383 - -0.7 40,383 - +0.3 40,383 - -1.0 40,383 - -2.8 40,433 + HMPREF1058_RS08135 0.12 -1.0 40,460 - HMPREF1058_RS08135 0.14 -0.0 40,460 - HMPREF1058_RS08135 0.14 -1.1 40,478 - HMPREF1058_RS08135 0.15 -0.5 40,569 - HMPREF1058_RS08135 0.21 +0.4 40,570 + HMPREF1058_RS08135 0.22 +0.1 40,570 + HMPREF1058_RS08135 0.22 -1.3 40,571 - HMPREF1058_RS08135 0.22 -0.2 40,571 - HMPREF1058_RS08135 0.22 -0.3 40,575 + HMPREF1058_RS08135 0.22 -0.5 40,580 - HMPREF1058_RS08135 0.22 -0.4 40,586 + HMPREF1058_RS08135 0.23 +0.5 40,587 - HMPREF1058_RS08135 0.23 -0.5 40,604 + HMPREF1058_RS08135 0.24 -1.1 40,605 - HMPREF1058_RS08135 0.24 -3.9 40,649 + HMPREF1058_RS08135 0.27 -0.1 40,649 + HMPREF1058_RS08135 0.27 +1.8 40,726 - HMPREF1058_RS08135 0.33 -3.1 40,862 + HMPREF1058_RS08135 0.43 +0.5 40,863 - HMPREF1058_RS08135 0.43 -3.5 40,863 - HMPREF1058_RS08135 0.43 +0.5 40,877 + HMPREF1058_RS08135 0.44 +0.9 40,877 + HMPREF1058_RS08135 0.44 -1.1 40,965 + HMPREF1058_RS08135 0.50 -4.0 40,966 - HMPREF1058_RS08135 0.50 -2.8 41,021 + HMPREF1058_RS08135 0.54 +1.2 41,122 - HMPREF1058_RS08135 0.61 +0.3 41,124 - HMPREF1058_RS08135 0.61 +0.5 41,124 - HMPREF1058_RS08135 0.61 -2.4 41,124 - HMPREF1058_RS08135 0.61 -3.0 41,324 + HMPREF1058_RS08135 0.76 -0.2 41,324 + HMPREF1058_RS08135 0.76 -2.1 41,324 + HMPREF1058_RS08135 0.76 -0.9 41,324 + HMPREF1058_RS08135 0.76 +2.1 41,324 + HMPREF1058_RS08135 0.76 +0.4 41,324 + HMPREF1058_RS08135 0.76 +1.1 41,324 + HMPREF1058_RS08135 0.76 +0.0 41,324 + HMPREF1058_RS08135 0.76 +1.5 41,325 - HMPREF1058_RS08135 0.76 +0.3 41,332 + HMPREF1058_RS08135 0.76 -0.7 41,333 - HMPREF1058_RS08135 0.77 -2.1 41,439 - HMPREF1058_RS08135 0.84 +0.5 41,439 - HMPREF1058_RS08135 0.84 -0.5 41,492 + HMPREF1058_RS08135 0.88 -1.6 41,496 + HMPREF1058_RS08135 0.88 -1.3 41,497 - HMPREF1058_RS08135 0.88 -1.2 41,506 + HMPREF1058_RS08135 0.89 -0.1 41,561 + -0.1 41,565 - +0.6 41,632 - -0.2 41,656 - +0.5 41,672 + +0.2 41,674 + -1.0 41,684 + +0.1 41,684 + -1.8 41,685 - +1.1 41,734 - -2.1 41,736 + -1.6 41,741 - +0.6 41,743 + -3.0 41,744 - -2.2 41,768 + -2.0 41,768 + -0.7 42,017 + HMPREF1058_RS08130 0.12 -1.0 42,017 + HMPREF1058_RS08130 0.12 -2.5 42,018 - HMPREF1058_RS08130 0.12 -1.5 42,018 - HMPREF1058_RS08130 0.12 +0.5 42,064 - HMPREF1058_RS08130 0.15 +0.1 42,159 + HMPREF1058_RS08130 0.20 -0.2 42,160 - HMPREF1058_RS08130 0.20 +0.7 42,160 - HMPREF1058_RS08130 0.20 -1.3 42,160 - HMPREF1058_RS08130 0.20 +0.7 42,318 + HMPREF1058_RS08130 0.28 +0.1 42,350 - HMPREF1058_RS08130 0.29 -2.0 42,364 - HMPREF1058_RS08130 0.30 -1.4 42,417 + HMPREF1058_RS08130 0.33 +0.8 42,499 - HMPREF1058_RS08130 0.37 -3.0 42,501 - HMPREF1058_RS08130 0.37 -0.0 42,615 - HMPREF1058_RS08130 0.43 +2.3 42,621 - HMPREF1058_RS08130 0.44 -1.0 42,621 - HMPREF1058_RS08130 0.44 +1.1
Or see this region's nucleotide sequence