Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07645 and HMPREF1058_RS07640 are separated by 2 nucleotides HMPREF1058_RS07640 and HMPREF1058_RS07635 are separated by 15 nucleotides HMPREF1058_RS07635 and HMPREF1058_RS07630 are separated by 69 nucleotides HMPREF1058_RS07630 and HMPREF1058_RS07625 are separated by 154 nucleotides HMPREF1058_RS07625 and HMPREF1058_RS07620 are separated by 160 nucleotides
HMPREF1058_RS07645: HMPREF1058_RS07645 - 30S ribosomal protein S6, at 170,799 to 171,143
_RS07645
HMPREF1058_RS07640: HMPREF1058_RS07640 - 30S ribosomal protein S18, at 171,146 to 171,415
_RS07640
HMPREF1058_RS07635: HMPREF1058_RS07635 - 50S ribosomal protein L9, at 171,431 to 171,874
_RS07635
HMPREF1058_RS07630: HMPREF1058_RS07630 - hypothetical protein, at 171,944 to 172,636
_RS07630
HMPREF1058_RS07625: HMPREF1058_RS07625 - hypothetical protein, at 172,791 to 172,991
_RS07625
HMPREF1058_RS07620: HMPREF1058_RS07620 - long-chain fatty acid--CoA ligase, at 173,152 to 174,825
_RS07620
Position (kb) 171
172
173 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 171.430 kb on + strand at 171.486 kb on + strand, within HMPREF1058_RS07635 at 171.654 kb on + strand, within HMPREF1058_RS07635 at 171.806 kb on + strand, within HMPREF1058_RS07635 at 171.806 kb on + strand, within HMPREF1058_RS07635 at 171.807 kb on - strand, within HMPREF1058_RS07635 at 171.885 kb on + strand at 171.895 kb on + strand at 171.949 kb on - strand at 171.980 kb on + strand at 172.000 kb on + strand at 172.021 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.057 kb on - strand, within HMPREF1058_RS07630 at 172.147 kb on + strand, within HMPREF1058_RS07630 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.283 kb on + strand, within HMPREF1058_RS07630 at 172.349 kb on - strand, within HMPREF1058_RS07630 at 172.385 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.489 kb on + strand, within HMPREF1058_RS07630 at 172.493 kb on + strand, within HMPREF1058_RS07630 at 172.546 kb on + strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.671 kb on + strand at 172.683 kb on - strand at 172.687 kb on + strand at 172.720 kb on + strand at 172.721 kb on - strand at 172.792 kb on + strand at 172.792 kb on + strand at 172.806 kb on - strand at 172.882 kb on - strand, within HMPREF1058_RS07625 at 172.965 kb on + strand, within HMPREF1058_RS07625 at 173.014 kb on - strand at 173.020 kb on - strand at 173.111 kb on - strand at 173.163 kb on + strand at 173.174 kb on + strand at 173.175 kb on - strand at 173.175 kb on - strand at 173.252 kb on + strand at 173.359 kb on + strand, within HMPREF1058_RS07620 at 173.362 kb on + strand, within HMPREF1058_RS07620 at 173.389 kb on + strand, within HMPREF1058_RS07620 at 173.389 kb on + strand, within HMPREF1058_RS07620 at 173.390 kb on - strand, within HMPREF1058_RS07620 at 173.396 kb on - strand, within HMPREF1058_RS07620 at 173.419 kb on - strand, within HMPREF1058_RS07620 at 173.421 kb on + strand, within HMPREF1058_RS07620 at 173.422 kb on - strand, within HMPREF1058_RS07620 at 173.422 kb on - strand, within HMPREF1058_RS07620 at 173.454 kb on + strand, within HMPREF1058_RS07620 at 173.466 kb on + strand, within HMPREF1058_RS07620 at 173.467 kb on - strand, within HMPREF1058_RS07620 at 173.501 kb on - strand, within HMPREF1058_RS07620 at 173.501 kb on - strand, within HMPREF1058_RS07620 at 173.502 kb on + strand, within HMPREF1058_RS07620 at 173.524 kb on + strand, within HMPREF1058_RS07620 at 173.525 kb on - strand, within HMPREF1058_RS07620 at 173.525 kb on - strand, within HMPREF1058_RS07620 at 173.529 kb on + strand, within HMPREF1058_RS07620 at 173.595 kb on + strand, within HMPREF1058_RS07620 at 173.595 kb on + strand, within HMPREF1058_RS07620 at 173.596 kb on - strand, within HMPREF1058_RS07620 at 173.597 kb on + strand, within HMPREF1058_RS07620 at 173.598 kb on - strand, within HMPREF1058_RS07620 at 173.598 kb on - strand, within HMPREF1058_RS07620 at 173.598 kb on - strand, within HMPREF1058_RS07620 at 173.627 kb on - strand, within HMPREF1058_RS07620 at 173.633 kb on - strand, within HMPREF1058_RS07620
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 171,430 + -1.1 171,486 + HMPREF1058_RS07635 0.12 -1.1 171,654 + HMPREF1058_RS07635 0.50 -2.3 171,806 + HMPREF1058_RS07635 0.84 -4.7 171,806 + HMPREF1058_RS07635 0.84 -3.5 171,807 - HMPREF1058_RS07635 0.85 -1.1 171,885 + -4.0 171,895 + -4.0 171,949 - +0.1 171,980 + +0.3 172,000 + -1.4 172,021 + HMPREF1058_RS07630 0.11 +1.1 172,056 + HMPREF1058_RS07630 0.16 -1.3 172,056 + HMPREF1058_RS07630 0.16 -0.5 172,056 + HMPREF1058_RS07630 0.16 -0.5 172,057 - HMPREF1058_RS07630 0.16 -1.6 172,147 + HMPREF1058_RS07630 0.29 +0.9 172,165 + HMPREF1058_RS07630 0.32 -1.6 172,165 + HMPREF1058_RS07630 0.32 -0.5 172,167 + HMPREF1058_RS07630 0.32 +1.7 172,167 + HMPREF1058_RS07630 0.32 +1.0 172,168 - HMPREF1058_RS07630 0.32 +1.0 172,168 - HMPREF1058_RS07630 0.32 +0.5 172,283 + HMPREF1058_RS07630 0.49 +1.0 172,349 - HMPREF1058_RS07630 0.58 +1.0 172,385 + HMPREF1058_RS07630 0.64 -2.7 172,415 + HMPREF1058_RS07630 0.68 -0.1 172,415 + HMPREF1058_RS07630 0.68 -0.3 172,441 + HMPREF1058_RS07630 0.72 +0.0 172,441 + HMPREF1058_RS07630 0.72 -1.5 172,489 + HMPREF1058_RS07630 0.79 -0.4 172,493 + HMPREF1058_RS07630 0.79 -0.6 172,546 + HMPREF1058_RS07630 0.87 -0.7 172,547 - HMPREF1058_RS07630 0.87 -0.1 172,547 - HMPREF1058_RS07630 0.87 -3.1 172,671 + +0.4 172,683 - -2.5 172,687 + +0.7 172,720 + -0.4 172,721 - +2.4 172,792 + -0.5 172,792 + +1.0 172,806 - +0.9 172,882 - HMPREF1058_RS07625 0.45 +0.9 172,965 + HMPREF1058_RS07625 0.87 -1.8 173,014 - +0.5 173,020 - +2.6 173,111 - +1.2 173,163 + -0.5 173,174 + -2.0 173,175 - -0.6 173,175 - +0.7 173,252 + -3.8 173,359 + HMPREF1058_RS07620 0.12 +1.4 173,362 + HMPREF1058_RS07620 0.13 +0.5 173,389 + HMPREF1058_RS07620 0.14 +1.3 173,389 + HMPREF1058_RS07620 0.14 -0.4 173,390 - HMPREF1058_RS07620 0.14 +0.1 173,396 - HMPREF1058_RS07620 0.15 -1.5 173,419 - HMPREF1058_RS07620 0.16 +0.3 173,421 + HMPREF1058_RS07620 0.16 +0.2 173,422 - HMPREF1058_RS07620 0.16 +0.4 173,422 - HMPREF1058_RS07620 0.16 +0.7 173,454 + HMPREF1058_RS07620 0.18 +0.4 173,466 + HMPREF1058_RS07620 0.19 +0.1 173,467 - HMPREF1058_RS07620 0.19 +0.6 173,501 - HMPREF1058_RS07620 0.21 -2.8 173,501 - HMPREF1058_RS07620 0.21 +1.4 173,502 + HMPREF1058_RS07620 0.21 -0.2 173,524 + HMPREF1058_RS07620 0.22 -2.8 173,525 - HMPREF1058_RS07620 0.22 +1.7 173,525 - HMPREF1058_RS07620 0.22 +0.2 173,529 + HMPREF1058_RS07620 0.23 +2.9 173,595 + HMPREF1058_RS07620 0.26 +0.7 173,595 + HMPREF1058_RS07620 0.26 -0.4 173,596 - HMPREF1058_RS07620 0.27 -0.7 173,597 + HMPREF1058_RS07620 0.27 +0.2 173,598 - HMPREF1058_RS07620 0.27 -1.5 173,598 - HMPREF1058_RS07620 0.27 +0.4 173,598 - HMPREF1058_RS07620 0.27 +0.4 173,627 - HMPREF1058_RS07620 0.28 +0.1 173,633 - HMPREF1058_RS07620 0.29 -0.1
Or see this region's nucleotide sequence