Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03490 and HMPREF1058_RS03485 are separated by 185 nucleotides HMPREF1058_RS03485 and HMPREF1058_RS03480 are separated by 3 nucleotides HMPREF1058_RS03480 and HMPREF1058_RS03475 are separated by 179 nucleotides
HMPREF1058_RS03490: HMPREF1058_RS03490 - glycosyltransferase family 4 protein, at 269,575 to 270,663
_RS03490
HMPREF1058_RS03485: HMPREF1058_RS03485 - RloB domain-containing protein, at 270,849 to 271,484
_RS03485
HMPREF1058_RS03480: HMPREF1058_RS03480 - ATP-binding protein, at 271,488 to 272,708
_RS03480
HMPREF1058_RS03475: HMPREF1058_RS03475 - radical SAM protein, at 272,888 to 273,961
_RS03475
Position (kb) 271
272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 270.653 kb on - strand at 270.656 kb on - strand at 270.758 kb on - strand at 270.881 kb on + strand at 270.893 kb on + strand at 270.894 kb on - strand at 270.999 kb on - strand, within HMPREF1058_RS03485 at 271.043 kb on + strand, within HMPREF1058_RS03485 at 271.234 kb on + strand, within HMPREF1058_RS03485 at 271.235 kb on - strand, within HMPREF1058_RS03485 at 271.267 kb on - strand, within HMPREF1058_RS03485 at 271.288 kb on - strand, within HMPREF1058_RS03485 at 271.597 kb on + strand at 271.677 kb on - strand, within HMPREF1058_RS03480 at 271.766 kb on + strand, within HMPREF1058_RS03480 at 271.807 kb on - strand, within HMPREF1058_RS03480 at 271.939 kb on + strand, within HMPREF1058_RS03480 at 271.968 kb on - strand, within HMPREF1058_RS03480 at 272.172 kb on + strand, within HMPREF1058_RS03480 at 272.172 kb on + strand, within HMPREF1058_RS03480 at 272.173 kb on - strand, within HMPREF1058_RS03480 at 272.268 kb on + strand, within HMPREF1058_RS03480 at 272.489 kb on - strand, within HMPREF1058_RS03480 at 272.603 kb on + strand at 272.603 kb on + strand at 272.603 kb on + strand at 272.658 kb on - strand at 272.785 kb on + strand at 272.785 kb on + strand at 272.790 kb on + strand at 272.790 kb on + strand at 272.881 kb on - strand at 272.904 kb on - strand at 273.016 kb on + strand, within HMPREF1058_RS03475 at 273.415 kb on - strand, within HMPREF1058_RS03475 at 273.425 kb on - strand, within HMPREF1058_RS03475 at 273.500 kb on - strand, within HMPREF1058_RS03475 at 273.506 kb on - strand, within HMPREF1058_RS03475
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 remove 270,653 - -3.6 270,656 - -1.9 270,758 - +0.3 270,881 + +1.9 270,893 + -1.5 270,894 - +0.3 270,999 - HMPREF1058_RS03485 0.24 +0.5 271,043 + HMPREF1058_RS03485 0.31 +0.9 271,234 + HMPREF1058_RS03485 0.61 +0.1 271,235 - HMPREF1058_RS03485 0.61 +0.3 271,267 - HMPREF1058_RS03485 0.66 -1.5 271,288 - HMPREF1058_RS03485 0.69 +0.5 271,597 + +0.5 271,677 - HMPREF1058_RS03480 0.15 -1.5 271,766 + HMPREF1058_RS03480 0.23 -1.5 271,807 - HMPREF1058_RS03480 0.26 +1.0 271,939 + HMPREF1058_RS03480 0.37 +0.8 271,968 - HMPREF1058_RS03480 0.39 -0.9 272,172 + HMPREF1058_RS03480 0.56 -0.3 272,172 + HMPREF1058_RS03480 0.56 +0.1 272,173 - HMPREF1058_RS03480 0.56 +1.3 272,268 + HMPREF1058_RS03480 0.64 -1.7 272,489 - HMPREF1058_RS03480 0.82 -0.0 272,603 + +0.0 272,603 + +0.1 272,603 + +1.8 272,658 - +0.5 272,785 + +1.3 272,785 + -1.7 272,790 + -0.8 272,790 + +0.5 272,881 - -0.2 272,904 - +0.5 273,016 + HMPREF1058_RS03475 0.12 -1.0 273,415 - HMPREF1058_RS03475 0.49 -0.7 273,425 - HMPREF1058_RS03475 0.50 -0.9 273,500 - HMPREF1058_RS03475 0.57 -3.6 273,506 - HMPREF1058_RS03475 0.58 -0.8
Or see this region's nucleotide sequence