Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18975

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS20350 and HMPREF1058_RS18980 are separated by 21 nucleotidesHMPREF1058_RS18980 and HMPREF1058_RS18975 are separated by 19 nucleotidesHMPREF1058_RS18975 and HMPREF1058_RS18970 are separated by 614 nucleotides HMPREF1058_RS20350: HMPREF1058_RS20350 - hypothetical protein, at 36,318 to 36,506 _RS20350 HMPREF1058_RS18980: HMPREF1058_RS18980 - SGNH/GDSL hydrolase family protein, at 36,528 to 37,451 _RS18980 HMPREF1058_RS18975: HMPREF1058_RS18975 - prolyl oligopeptidase family serine peptidase, at 37,471 to 39,582 _RS18975 HMPREF1058_RS18970: HMPREF1058_RS18970 - hypothetical protein, at 40,197 to 40,589 _RS18970 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 36.478 kb on + strand, within HMPREF1058_RS20350at 36.478 kb on + strand, within HMPREF1058_RS20350at 36.586 kb on + strandat 36.586 kb on + strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.638 kb on + strand, within HMPREF1058_RS18980at 36.639 kb on - strand, within HMPREF1058_RS18980at 36.701 kb on + strand, within HMPREF1058_RS18980at 36.708 kb on + strand, within HMPREF1058_RS18980at 36.709 kb on - strand, within HMPREF1058_RS18980at 36.709 kb on - strand, within HMPREF1058_RS18980at 36.715 kb on + strand, within HMPREF1058_RS18980at 36.715 kb on + strand, within HMPREF1058_RS18980at 36.715 kb on + strand, within HMPREF1058_RS18980at 37.039 kb on + strand, within HMPREF1058_RS18980at 37.040 kb on - strand, within HMPREF1058_RS18980at 37.043 kb on + strand, within HMPREF1058_RS18980at 37.044 kb on - strand, within HMPREF1058_RS18980at 37.186 kb on - strand, within HMPREF1058_RS18980at 37.452 kb on - strandat 37.467 kb on - strandat 37.593 kb on + strandat 37.626 kb on + strandat 37.645 kb on - strandat 37.767 kb on + strand, within HMPREF1058_RS18975at 37.838 kb on + strand, within HMPREF1058_RS18975at 37.849 kb on - strand, within HMPREF1058_RS18975at 37.860 kb on - strand, within HMPREF1058_RS18975at 38.192 kb on - strand, within HMPREF1058_RS18975at 38.301 kb on + strand, within HMPREF1058_RS18975at 38.302 kb on - strand, within HMPREF1058_RS18975at 38.534 kb on + strand, within HMPREF1058_RS18975at 38.535 kb on - strand, within HMPREF1058_RS18975at 38.672 kb on - strand, within HMPREF1058_RS18975at 38.690 kb on + strand, within HMPREF1058_RS18975at 38.691 kb on - strand, within HMPREF1058_RS18975at 38.691 kb on - strand, within HMPREF1058_RS18975at 38.822 kb on - strand, within HMPREF1058_RS18975at 38.832 kb on - strand, within HMPREF1058_RS18975at 39.049 kb on - strand, within HMPREF1058_RS18975at 39.055 kb on - strand, within HMPREF1058_RS18975at 39.071 kb on + strand, within HMPREF1058_RS18975at 39.098 kb on - strand, within HMPREF1058_RS18975at 39.222 kb on - strand, within HMPREF1058_RS18975at 39.419 kb on + strandat 39.477 kb on - strandat 39.507 kb on + strandat 39.559 kb on - strandat 39.559 kb on - strandat 39.559 kb on - strandat 39.679 kb on + strandat 39.680 kb on - strandat 39.680 kb on - strandat 39.680 kb on - strandat 39.680 kb on - strandat 39.680 kb on - strandat 39.680 kb on - strandat 39.689 kb on + strandat 39.689 kb on + strandat 39.690 kb on - strandat 39.690 kb on - strandat 39.690 kb on - strandat 39.693 kb on + strandat 39.693 kb on + strandat 39.693 kb on + strandat 39.694 kb on - strandat 39.694 kb on - strandat 39.778 kb on + strandat 39.857 kb on - strandat 39.857 kb on - strandat 39.892 kb on + strandat 39.893 kb on - strandat 39.915 kb on - strandat 39.997 kb on - strandat 40.073 kb on + strandat 40.073 kb on + strandat 40.122 kb on + strandat 40.122 kb on + strandat 40.123 kb on - strandat 40.123 kb on - strandat 40.126 kb on + strandat 40.173 kb on + strandat 40.209 kb on + strandat 40.233 kb on - strandat 40.333 kb on - strand, within HMPREF1058_RS18970at 40.338 kb on - strand, within HMPREF1058_RS18970at 40.372 kb on + strand, within HMPREF1058_RS18970at 40.372 kb on + strand, within HMPREF1058_RS18970at 40.372 kb on + strand, within HMPREF1058_RS18970at 40.372 kb on + strand, within HMPREF1058_RS18970at 40.373 kb on - strand, within HMPREF1058_RS18970at 40.427 kb on + strand, within HMPREF1058_RS18970at 40.428 kb on - strand, within HMPREF1058_RS18970at 40.466 kb on + strand, within HMPREF1058_RS18970at 40.468 kb on + strand, within HMPREF1058_RS18970at 40.512 kb on - strand, within HMPREF1058_RS18970at 40.516 kb on - strand, within HMPREF1058_RS18970at 40.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9
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36,478 + HMPREF1058_RS20350 0.85 +0.2
36,478 + HMPREF1058_RS20350 0.85 -1.3
36,586 + -0.1
36,586 + -0.4
36,587 - +0.1
36,587 - +0.4
36,587 - +0.4
36,638 + HMPREF1058_RS18980 0.12 -0.5
36,639 - HMPREF1058_RS18980 0.12 -1.2
36,701 + HMPREF1058_RS18980 0.19 -0.5
36,708 + HMPREF1058_RS18980 0.19 -1.2
36,709 - HMPREF1058_RS18980 0.20 +0.5
36,709 - HMPREF1058_RS18980 0.20 +0.3
36,715 + HMPREF1058_RS18980 0.20 +2.2
36,715 + HMPREF1058_RS18980 0.20 +0.5
36,715 + HMPREF1058_RS18980 0.20 -0.8
37,039 + HMPREF1058_RS18980 0.55 -3.7
37,040 - HMPREF1058_RS18980 0.55 -0.5
37,043 + HMPREF1058_RS18980 0.56 +1.0
37,044 - HMPREF1058_RS18980 0.56 -0.5
37,186 - HMPREF1058_RS18980 0.71 +0.0
37,452 - -0.2
37,467 - +0.2
37,593 + -0.5
37,626 + -0.6
37,645 - +0.6
37,767 + HMPREF1058_RS18975 0.14 -1.9
37,838 + HMPREF1058_RS18975 0.17 -1.2
37,849 - HMPREF1058_RS18975 0.18 -1.3
37,860 - HMPREF1058_RS18975 0.18 -0.6
38,192 - HMPREF1058_RS18975 0.34 -0.3
38,301 + HMPREF1058_RS18975 0.39 -3.0
38,302 - HMPREF1058_RS18975 0.39 +0.0
38,534 + HMPREF1058_RS18975 0.50 -3.9
38,535 - HMPREF1058_RS18975 0.50 +0.1
38,672 - HMPREF1058_RS18975 0.57 +0.2
38,690 + HMPREF1058_RS18975 0.58 -1.4
38,691 - HMPREF1058_RS18975 0.58 -0.4
38,691 - HMPREF1058_RS18975 0.58 -0.4
38,822 - HMPREF1058_RS18975 0.64 -1.4
38,832 - HMPREF1058_RS18975 0.64 +0.2
39,049 - HMPREF1058_RS18975 0.75 -0.5
39,055 - HMPREF1058_RS18975 0.75 -0.7
39,071 + HMPREF1058_RS18975 0.76 -1.1
39,098 - HMPREF1058_RS18975 0.77 -1.3
39,222 - HMPREF1058_RS18975 0.83 -0.2
39,419 + +1.8
39,477 - -0.2
39,507 + -0.3
39,559 - -0.5
39,559 - -3.1
39,559 - +0.1
39,679 + +0.3
39,680 - -0.2
39,680 - -1.8
39,680 - -0.1
39,680 - -0.5
39,680 - +0.1
39,680 - -2.3
39,689 + +0.3
39,689 + +1.2
39,690 - -0.3
39,690 - -0.8
39,690 - +0.2
39,693 + -0.2
39,693 + +1.8
39,693 + -1.0
39,694 - +0.3
39,694 - -1.2
39,778 + +0.6
39,857 - +0.4
39,857 - -0.1
39,892 + -0.1
39,893 - -0.7
39,915 - -0.3
39,997 - +0.5
40,073 + -0.2
40,073 + -0.5
40,122 + +0.2
40,122 + -0.4
40,123 - -1.0
40,123 - +0.4
40,126 + -0.6
40,173 + +0.0
40,209 + -1.3
40,233 - +0.8
40,333 - HMPREF1058_RS18970 0.35 -2.1
40,338 - HMPREF1058_RS18970 0.36 -0.7
40,372 + HMPREF1058_RS18970 0.45 -0.8
40,372 + HMPREF1058_RS18970 0.45 -2.3
40,372 + HMPREF1058_RS18970 0.45 -1.3
40,372 + HMPREF1058_RS18970 0.45 +0.2
40,373 - HMPREF1058_RS18970 0.45 -0.7
40,427 + HMPREF1058_RS18970 0.59 -0.2
40,428 - HMPREF1058_RS18970 0.59 -0.3
40,466 + HMPREF1058_RS18970 0.68 -0.6
40,468 + HMPREF1058_RS18970 0.69 -0.3
40,512 - HMPREF1058_RS18970 0.80 +2.1
40,516 - HMPREF1058_RS18970 0.81 -0.3
40,561 - -0.1

Or see this region's nucleotide sequence