Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08085 and HMPREF1058_RS08080 are separated by 20 nucleotides HMPREF1058_RS08080 and HMPREF1058_RS08075 are separated by 121 nucleotides
HMPREF1058_RS08085: HMPREF1058_RS08085 - redoxin domain-containing protein, at 56,513 to 57,703
_RS08085
HMPREF1058_RS08080: HMPREF1058_RS08080 - TlpA family protein disulfide reductase, at 57,724 to 59,832
_RS08080
HMPREF1058_RS08075: HMPREF1058_RS08075 - hypothetical protein, at 59,954 to 60,727
_RS08075
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.741 kb on - strand, within HMPREF1058_RS08085 at 56.915 kb on + strand, within HMPREF1058_RS08085 at 56.920 kb on + strand, within HMPREF1058_RS08085 at 56.956 kb on + strand, within HMPREF1058_RS08085 at 56.978 kb on + strand, within HMPREF1058_RS08085 at 56.987 kb on - strand, within HMPREF1058_RS08085 at 57.146 kb on + strand, within HMPREF1058_RS08085 at 57.146 kb on + strand, within HMPREF1058_RS08085 at 57.146 kb on + strand, within HMPREF1058_RS08085 at 57.147 kb on - strand, within HMPREF1058_RS08085 at 57.148 kb on + strand, within HMPREF1058_RS08085 at 57.201 kb on - strand, within HMPREF1058_RS08085 at 57.235 kb on - strand, within HMPREF1058_RS08085 at 57.318 kb on - strand, within HMPREF1058_RS08085 at 57.355 kb on - strand, within HMPREF1058_RS08085 at 57.355 kb on - strand, within HMPREF1058_RS08085 at 57.375 kb on + strand, within HMPREF1058_RS08085 at 57.408 kb on - strand, within HMPREF1058_RS08085 at 57.539 kb on + strand, within HMPREF1058_RS08085 at 57.629 kb on - strand at 57.819 kb on + strand at 57.828 kb on + strand at 57.829 kb on - strand at 57.921 kb on + strand at 57.985 kb on - strand, within HMPREF1058_RS08080 at 58.039 kb on - strand, within HMPREF1058_RS08080 at 58.251 kb on - strand, within HMPREF1058_RS08080 at 58.268 kb on - strand, within HMPREF1058_RS08080 at 58.323 kb on + strand, within HMPREF1058_RS08080 at 58.601 kb on + strand, within HMPREF1058_RS08080 at 58.601 kb on + strand, within HMPREF1058_RS08080 at 58.602 kb on - strand, within HMPREF1058_RS08080 at 58.602 kb on - strand, within HMPREF1058_RS08080 at 58.634 kb on + strand, within HMPREF1058_RS08080 at 58.635 kb on - strand, within HMPREF1058_RS08080 at 58.637 kb on - strand, within HMPREF1058_RS08080 at 58.638 kb on + strand, within HMPREF1058_RS08080 at 58.638 kb on + strand, within HMPREF1058_RS08080 at 58.638 kb on + strand, within HMPREF1058_RS08080 at 58.642 kb on - strand, within HMPREF1058_RS08080 at 58.642 kb on - strand, within HMPREF1058_RS08080 at 58.808 kb on - strand, within HMPREF1058_RS08080 at 58.808 kb on - strand, within HMPREF1058_RS08080 at 58.813 kb on + strand, within HMPREF1058_RS08080 at 58.913 kb on + strand, within HMPREF1058_RS08080 at 58.913 kb on + strand, within HMPREF1058_RS08080 at 58.914 kb on - strand, within HMPREF1058_RS08080 at 59.011 kb on - strand, within HMPREF1058_RS08080 at 59.012 kb on + strand, within HMPREF1058_RS08080 at 59.013 kb on - strand, within HMPREF1058_RS08080 at 59.064 kb on - strand, within HMPREF1058_RS08080 at 59.173 kb on - strand, within HMPREF1058_RS08080 at 59.173 kb on - strand, within HMPREF1058_RS08080 at 59.173 kb on - strand, within HMPREF1058_RS08080 at 59.205 kb on - strand, within HMPREF1058_RS08080 at 59.301 kb on - strand, within HMPREF1058_RS08080 at 59.301 kb on - strand, within HMPREF1058_RS08080 at 59.414 kb on - strand, within HMPREF1058_RS08080 at 59.589 kb on - strand, within HMPREF1058_RS08080 at 59.692 kb on + strand at 59.715 kb on - strand at 59.715 kb on - strand at 59.734 kb on - strand at 59.885 kb on + strand at 59.914 kb on + strand at 59.914 kb on + strand at 59.914 kb on + strand at 59.916 kb on + strand at 59.923 kb on - strand at 59.936 kb on + strand at 60.068 kb on + strand, within HMPREF1058_RS08075 at 60.142 kb on + strand, within HMPREF1058_RS08075 at 60.143 kb on - strand, within HMPREF1058_RS08075 at 60.144 kb on + strand, within HMPREF1058_RS08075 at 60.164 kb on - strand, within HMPREF1058_RS08075 at 60.248 kb on - strand, within HMPREF1058_RS08075 at 60.248 kb on - strand, within HMPREF1058_RS08075 at 60.347 kb on - strand, within HMPREF1058_RS08075 at 60.430 kb on + strand, within HMPREF1058_RS08075 at 60.430 kb on + strand, within HMPREF1058_RS08075 at 60.499 kb on - strand, within HMPREF1058_RS08075 at 60.499 kb on - strand, within HMPREF1058_RS08075 at 60.678 kb on + strand at 60.678 kb on + strand at 60.682 kb on - strand at 60.744 kb on - strand at 60.767 kb on - strand at 60.795 kb on - strand at 60.798 kb on - strand at 60.827 kb on + strand at 60.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 remove 56,741 - HMPREF1058_RS08085 0.19 +0.0 56,915 + HMPREF1058_RS08085 0.34 -0.9 56,920 + HMPREF1058_RS08085 0.34 -0.6 56,956 + HMPREF1058_RS08085 0.37 -1.6 56,978 + HMPREF1058_RS08085 0.39 +0.5 56,987 - HMPREF1058_RS08085 0.40 -0.1 57,146 + HMPREF1058_RS08085 0.53 -1.4 57,146 + HMPREF1058_RS08085 0.53 -0.2 57,146 + HMPREF1058_RS08085 0.53 -0.7 57,147 - HMPREF1058_RS08085 0.53 -2.3 57,148 + HMPREF1058_RS08085 0.53 -0.9 57,201 - HMPREF1058_RS08085 0.58 -0.2 57,235 - HMPREF1058_RS08085 0.61 -0.1 57,318 - HMPREF1058_RS08085 0.68 -0.9 57,355 - HMPREF1058_RS08085 0.71 +0.6 57,355 - HMPREF1058_RS08085 0.71 +0.7 57,375 + HMPREF1058_RS08085 0.72 +0.4 57,408 - HMPREF1058_RS08085 0.75 -0.9 57,539 + HMPREF1058_RS08085 0.86 -0.4 57,629 - -0.1 57,819 + -0.2 57,828 + -0.6 57,829 - +1.4 57,921 + +0.1 57,985 - HMPREF1058_RS08080 0.12 -1.4 58,039 - HMPREF1058_RS08080 0.15 -0.5 58,251 - HMPREF1058_RS08080 0.25 +0.3 58,268 - HMPREF1058_RS08080 0.26 +0.7 58,323 + HMPREF1058_RS08080 0.28 -1.5 58,601 + HMPREF1058_RS08080 0.42 -0.1 58,601 + HMPREF1058_RS08080 0.42 -2.4 58,602 - HMPREF1058_RS08080 0.42 +0.8 58,602 - HMPREF1058_RS08080 0.42 -0.3 58,634 + HMPREF1058_RS08080 0.43 +1.4 58,635 - HMPREF1058_RS08080 0.43 -0.0 58,637 - HMPREF1058_RS08080 0.43 -0.1 58,638 + HMPREF1058_RS08080 0.43 -2.1 58,638 + HMPREF1058_RS08080 0.43 +0.9 58,638 + HMPREF1058_RS08080 0.43 +0.3 58,642 - HMPREF1058_RS08080 0.44 -1.2 58,642 - HMPREF1058_RS08080 0.44 -1.4 58,808 - HMPREF1058_RS08080 0.51 +1.2 58,808 - HMPREF1058_RS08080 0.51 +1.6 58,813 + HMPREF1058_RS08080 0.52 +0.9 58,913 + HMPREF1058_RS08080 0.56 -0.7 58,913 + HMPREF1058_RS08080 0.56 +1.2 58,914 - HMPREF1058_RS08080 0.56 +0.8 59,011 - HMPREF1058_RS08080 0.61 +0.0 59,012 + HMPREF1058_RS08080 0.61 +0.3 59,013 - HMPREF1058_RS08080 0.61 +0.7 59,064 - HMPREF1058_RS08080 0.64 -0.4 59,173 - HMPREF1058_RS08080 0.69 +1.0 59,173 - HMPREF1058_RS08080 0.69 -0.4 59,173 - HMPREF1058_RS08080 0.69 +0.5 59,205 - HMPREF1058_RS08080 0.70 +0.1 59,301 - HMPREF1058_RS08080 0.75 -0.7 59,301 - HMPREF1058_RS08080 0.75 +0.9 59,414 - HMPREF1058_RS08080 0.80 -1.7 59,589 - HMPREF1058_RS08080 0.88 -0.8 59,692 + -0.1 59,715 - -0.2 59,715 - -0.1 59,734 - +0.2 59,885 + -1.6 59,914 + -0.7 59,914 + -1.6 59,914 + -0.9 59,916 + +1.4 59,923 - -1.0 59,936 + -1.9 60,068 + HMPREF1058_RS08075 0.15 -1.4 60,142 + HMPREF1058_RS08075 0.24 +0.3 60,143 - HMPREF1058_RS08075 0.24 +1.9 60,144 + HMPREF1058_RS08075 0.25 -3.3 60,164 - HMPREF1058_RS08075 0.27 +0.3 60,248 - HMPREF1058_RS08075 0.38 -0.4 60,248 - HMPREF1058_RS08075 0.38 +0.5 60,347 - HMPREF1058_RS08075 0.51 -2.4 60,430 + HMPREF1058_RS08075 0.61 -1.0 60,430 + HMPREF1058_RS08075 0.61 +0.6 60,499 - HMPREF1058_RS08075 0.70 -1.0 60,499 - HMPREF1058_RS08075 0.70 -0.5 60,678 + -1.5 60,678 + +0.2 60,682 - +2.1 60,744 - +0.9 60,767 - +1.3 60,795 - +1.1 60,798 - -0.9 60,827 + +1.9 60,829 + -0.1
Or see this region's nucleotide sequence