Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09970 and HMPREF1058_RS09965 are separated by 20 nucleotides HMPREF1058_RS09965 and HMPREF1058_RS09960 overlap by 4 nucleotides HMPREF1058_RS09960 and HMPREF1058_RS09955 are separated by 45 nucleotides HMPREF1058_RS09955 and HMPREF1058_RS20750 are separated by 117 nucleotides HMPREF1058_RS20750 and HMPREF1058_RS09945 are separated by 50 nucleotides
HMPREF1058_RS09970: HMPREF1058_RS09970 - hypothetical protein, at 754,681 to 754,938
_RS09970
HMPREF1058_RS09965: HMPREF1058_RS09965 - DUF3873 domain-containing protein, at 754,959 to 755,192
_RS09965
HMPREF1058_RS09960: HMPREF1058_RS09960 - hypothetical protein, at 755,189 to 755,434
_RS09960
HMPREF1058_RS09955: HMPREF1058_RS09955 - hypothetical protein, at 755,480 to 755,788
_RS09955
HMPREF1058_RS20750: HMPREF1058_RS20750 - hypothetical protein, at 755,906 to 756,127
_RS20750
HMPREF1058_RS09945: HMPREF1058_RS09945 - hypothetical protein, at 756,178 to 757,161
_RS09945
Position (kb) 755
756
757 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 754.985 kb on + strand, within HMPREF1058_RS09965 at 754.988 kb on - strand, within HMPREF1058_RS09965 at 754.988 kb on - strand, within HMPREF1058_RS09965 at 755.035 kb on + strand, within HMPREF1058_RS09965 at 755.036 kb on - strand, within HMPREF1058_RS09965 at 755.150 kb on + strand, within HMPREF1058_RS09965 at 755.201 kb on + strand at 755.233 kb on + strand, within HMPREF1058_RS09960 at 755.344 kb on + strand, within HMPREF1058_RS09960 at 755.508 kb on + strand at 755.728 kb on - strand, within HMPREF1058_RS09955 at 755.811 kb on + strand at 755.816 kb on + strand at 755.965 kb on - strand, within HMPREF1058_RS20750 at 756.014 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.025 kb on + strand, within HMPREF1058_RS20750 at 756.179 kb on + strand at 756.180 kb on - strand at 756.181 kb on + strand at 756.182 kb on - strand at 756.225 kb on + strand at 756.257 kb on + strand at 756.267 kb on + strand at 756.267 kb on + strand at 756.267 kb on + strand at 756.268 kb on - strand at 756.268 kb on - strand at 756.269 kb on + strand at 756.269 kb on + strand at 756.334 kb on + strand, within HMPREF1058_RS09945 at 756.335 kb on - strand, within HMPREF1058_RS09945 at 756.335 kb on - strand, within HMPREF1058_RS09945 at 756.352 kb on + strand, within HMPREF1058_RS09945 at 756.353 kb on - strand, within HMPREF1058_RS09945 at 756.356 kb on + strand, within HMPREF1058_RS09945 at 756.357 kb on - strand, within HMPREF1058_RS09945 at 756.482 kb on - strand, within HMPREF1058_RS09945 at 756.482 kb on - strand, within HMPREF1058_RS09945 at 756.485 kb on - strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.505 kb on - strand, within HMPREF1058_RS09945 at 756.505 kb on - strand, within HMPREF1058_RS09945 at 756.506 kb on + strand, within HMPREF1058_RS09945 at 756.507 kb on - strand, within HMPREF1058_RS09945 at 756.507 kb on - strand, within HMPREF1058_RS09945 at 756.507 kb on - strand, within HMPREF1058_RS09945 at 756.550 kb on - strand, within HMPREF1058_RS09945 at 756.583 kb on + strand, within HMPREF1058_RS09945 at 756.583 kb on + strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.585 kb on + strand, within HMPREF1058_RS09945 at 756.623 kb on - strand, within HMPREF1058_RS09945 at 756.627 kb on - strand, within HMPREF1058_RS09945 at 756.650 kb on + strand, within HMPREF1058_RS09945 at 756.651 kb on - strand, within HMPREF1058_RS09945 at 756.651 kb on - strand, within HMPREF1058_RS09945 at 756.651 kb on - strand, within HMPREF1058_RS09945 at 756.652 kb on + strand, within HMPREF1058_RS09945 at 756.652 kb on + strand, within HMPREF1058_RS09945 at 756.655 kb on - strand, within HMPREF1058_RS09945 at 756.655 kb on - strand, within HMPREF1058_RS09945 at 756.674 kb on + strand, within HMPREF1058_RS09945 at 756.676 kb on + strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.721 kb on - strand, within HMPREF1058_RS09945 at 756.753 kb on + strand, within HMPREF1058_RS09945 at 756.804 kb on - strand, within HMPREF1058_RS09945 at 756.808 kb on + strand, within HMPREF1058_RS09945 at 756.809 kb on - strand, within HMPREF1058_RS09945 at 756.870 kb on + strand, within HMPREF1058_RS09945 at 756.897 kb on + strand, within HMPREF1058_RS09945 at 756.911 kb on - strand, within HMPREF1058_RS09945 at 757.000 kb on - strand, within HMPREF1058_RS09945 at 757.023 kb on + strand, within HMPREF1058_RS09945 at 757.048 kb on - strand, within HMPREF1058_RS09945
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 754,985 + HMPREF1058_RS09965 0.11 +0.4 754,988 - HMPREF1058_RS09965 0.12 -1.8 754,988 - HMPREF1058_RS09965 0.12 -0.8 755,035 + HMPREF1058_RS09965 0.32 +0.6 755,036 - HMPREF1058_RS09965 0.33 -1.5 755,150 + HMPREF1058_RS09965 0.82 +1.5 755,201 + +1.8 755,233 + HMPREF1058_RS09960 0.18 -2.2 755,344 + HMPREF1058_RS09960 0.63 -0.0 755,508 + +1.1 755,728 - HMPREF1058_RS09955 0.80 -2.2 755,811 + +1.9 755,816 + -0.9 755,965 - HMPREF1058_RS20750 0.27 +0.1 756,014 + HMPREF1058_RS20750 0.49 -0.3 756,023 + HMPREF1058_RS20750 0.53 +0.0 756,023 + HMPREF1058_RS20750 0.53 -0.3 756,023 + HMPREF1058_RS20750 0.53 -1.2 756,023 + HMPREF1058_RS20750 0.53 -1.2 756,023 + HMPREF1058_RS20750 0.53 +0.2 756,025 + HMPREF1058_RS20750 0.54 -0.4 756,179 + -0.1 756,180 - +0.7 756,181 + +1.2 756,182 - -1.3 756,225 + +0.0 756,257 + -0.2 756,267 + +0.3 756,267 + +0.7 756,267 + -0.6 756,268 - +0.5 756,268 - -1.7 756,269 + +0.5 756,269 + +1.0 756,334 + HMPREF1058_RS09945 0.16 +0.8 756,335 - HMPREF1058_RS09945 0.16 -0.3 756,335 - HMPREF1058_RS09945 0.16 -5.1 756,352 + HMPREF1058_RS09945 0.18 -2.5 756,353 - HMPREF1058_RS09945 0.18 +0.7 756,356 + HMPREF1058_RS09945 0.18 -0.3 756,357 - HMPREF1058_RS09945 0.18 +0.3 756,482 - HMPREF1058_RS09945 0.31 -2.0 756,482 - HMPREF1058_RS09945 0.31 +1.6 756,485 - HMPREF1058_RS09945 0.31 -0.8 756,504 + HMPREF1058_RS09945 0.33 +1.3 756,504 + HMPREF1058_RS09945 0.33 -1.9 756,504 + HMPREF1058_RS09945 0.33 +0.2 756,504 + HMPREF1058_RS09945 0.33 +1.1 756,504 + HMPREF1058_RS09945 0.33 -0.9 756,505 - HMPREF1058_RS09945 0.33 +0.2 756,505 - HMPREF1058_RS09945 0.33 -0.3 756,506 + HMPREF1058_RS09945 0.33 +1.8 756,507 - HMPREF1058_RS09945 0.33 -0.5 756,507 - HMPREF1058_RS09945 0.33 +1.6 756,507 - HMPREF1058_RS09945 0.33 -0.5 756,550 - HMPREF1058_RS09945 0.38 +0.0 756,583 + HMPREF1058_RS09945 0.41 -1.5 756,583 + HMPREF1058_RS09945 0.41 -1.5 756,584 - HMPREF1058_RS09945 0.41 -0.7 756,584 - HMPREF1058_RS09945 0.41 -0.2 756,584 - HMPREF1058_RS09945 0.41 +2.4 756,584 - HMPREF1058_RS09945 0.41 +0.3 756,585 + HMPREF1058_RS09945 0.41 -0.6 756,623 - HMPREF1058_RS09945 0.45 -1.8 756,627 - HMPREF1058_RS09945 0.46 -1.8 756,650 + HMPREF1058_RS09945 0.48 -0.1 756,651 - HMPREF1058_RS09945 0.48 +0.2 756,651 - HMPREF1058_RS09945 0.48 -1.1 756,651 - HMPREF1058_RS09945 0.48 -1.7 756,652 + HMPREF1058_RS09945 0.48 -2.4 756,652 + HMPREF1058_RS09945 0.48 +0.4 756,655 - HMPREF1058_RS09945 0.48 -0.7 756,655 - HMPREF1058_RS09945 0.48 +0.2 756,674 + HMPREF1058_RS09945 0.50 -1.1 756,676 + HMPREF1058_RS09945 0.51 -0.2 756,677 - HMPREF1058_RS09945 0.51 +1.6 756,677 - HMPREF1058_RS09945 0.51 -0.3 756,677 - HMPREF1058_RS09945 0.51 -0.2 756,677 - HMPREF1058_RS09945 0.51 -3.5 756,721 - HMPREF1058_RS09945 0.55 -0.2 756,753 + HMPREF1058_RS09945 0.58 +0.4 756,804 - HMPREF1058_RS09945 0.64 -2.2 756,808 + HMPREF1058_RS09945 0.64 -1.2 756,809 - HMPREF1058_RS09945 0.64 -2.5 756,870 + HMPREF1058_RS09945 0.70 +1.5 756,897 + HMPREF1058_RS09945 0.73 +0.3 756,911 - HMPREF1058_RS09945 0.74 -0.9 757,000 - HMPREF1058_RS09945 0.84 -2.7 757,023 + HMPREF1058_RS09945 0.86 +0.1 757,048 - HMPREF1058_RS09945 0.88 +2.3
Or see this region's nucleotide sequence