Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16775 and HMPREF1058_RS16770 are separated by 34 nucleotides HMPREF1058_RS16770 and HMPREF1058_RS16765 are separated by 157 nucleotides HMPREF1058_RS16765 and HMPREF1058_RS16760 are separated by 20 nucleotides
HMPREF1058_RS16775: HMPREF1058_RS16775 - tRNA pseudouridine(38-40) synthase TruA, at 600,427 to 601,200
_RS16775
HMPREF1058_RS16770: HMPREF1058_RS16770 - hypothetical protein, at 601,235 to 601,909
_RS16770
HMPREF1058_RS16765: HMPREF1058_RS16765 - PhoH family protein, at 602,067 to 603,071
_RS16765
HMPREF1058_RS16760: HMPREF1058_RS16760 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 603,092 to 604,036
_RS16760
Position (kb) 602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 601.069 kb on + strand, within HMPREF1058_RS16775 at 601.123 kb on + strand at 601.184 kb on + strand at 601.247 kb on + strand at 601.247 kb on + strand at 601.248 kb on - strand at 601.279 kb on + strand at 601.279 kb on + strand at 601.280 kb on - strand at 601.351 kb on + strand, within HMPREF1058_RS16770 at 601.363 kb on + strand, within HMPREF1058_RS16770 at 601.391 kb on - strand, within HMPREF1058_RS16770 at 601.571 kb on + strand, within HMPREF1058_RS16770 at 601.572 kb on - strand, within HMPREF1058_RS16770 at 601.572 kb on - strand, within HMPREF1058_RS16770 at 601.572 kb on - strand, within HMPREF1058_RS16770 at 601.768 kb on + strand, within HMPREF1058_RS16770 at 601.777 kb on - strand, within HMPREF1058_RS16770 at 601.781 kb on - strand, within HMPREF1058_RS16770 at 601.785 kb on - strand, within HMPREF1058_RS16770 at 601.794 kb on - strand, within HMPREF1058_RS16770 at 601.794 kb on - strand, within HMPREF1058_RS16770 at 601.900 kb on + strand at 601.910 kb on - strand at 601.919 kb on - strand at 602.032 kb on + strand at 602.083 kb on + strand at 602.089 kb on + strand at 602.110 kb on + strand at 602.242 kb on + strand, within HMPREF1058_RS16765 at 602.242 kb on + strand, within HMPREF1058_RS16765 at 602.329 kb on + strand, within HMPREF1058_RS16765 at 602.329 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.348 kb on + strand, within HMPREF1058_RS16765 at 602.353 kb on + strand, within HMPREF1058_RS16765 at 602.432 kb on + strand, within HMPREF1058_RS16765 at 602.470 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.472 kb on + strand, within HMPREF1058_RS16765 at 602.611 kb on + strand, within HMPREF1058_RS16765 at 602.632 kb on + strand, within HMPREF1058_RS16765 at 602.639 kb on + strand, within HMPREF1058_RS16765 at 602.639 kb on + strand, within HMPREF1058_RS16765 at 602.708 kb on + strand, within HMPREF1058_RS16765 at 602.780 kb on + strand, within HMPREF1058_RS16765 at 602.845 kb on + strand, within HMPREF1058_RS16765 at 602.947 kb on + strand, within HMPREF1058_RS16765 at 603.097 kb on + strand at 603.168 kb on + strand at 603.201 kb on + strand, within HMPREF1058_RS16760 at 603.214 kb on + strand, within HMPREF1058_RS16760 at 603.231 kb on + strand, within HMPREF1058_RS16760 at 603.364 kb on + strand, within HMPREF1058_RS16760 at 603.684 kb on + strand, within HMPREF1058_RS16760 at 603.721 kb on + strand, within HMPREF1058_RS16760 at 603.725 kb on + strand, within HMPREF1058_RS16760 at 603.826 kb on + strand, within HMPREF1058_RS16760 at 603.999 kb on + strand at 604.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 601,069 + HMPREF1058_RS16775 0.83 -1.5 601,123 + -1.9 601,184 + +0.3 601,247 + +1.0 601,247 + -1.3 601,248 - -2.6 601,279 + -3.1 601,279 + -1.1 601,280 - -0.5 601,351 + HMPREF1058_RS16770 0.17 -2.4 601,363 + HMPREF1058_RS16770 0.19 -1.2 601,391 - HMPREF1058_RS16770 0.23 -2.9 601,571 + HMPREF1058_RS16770 0.50 +0.3 601,572 - HMPREF1058_RS16770 0.50 -1.9 601,572 - HMPREF1058_RS16770 0.50 +0.6 601,572 - HMPREF1058_RS16770 0.50 +1.2 601,768 + HMPREF1058_RS16770 0.79 -2.1 601,777 - HMPREF1058_RS16770 0.80 +0.7 601,781 - HMPREF1058_RS16770 0.81 -0.4 601,785 - HMPREF1058_RS16770 0.81 -1.8 601,794 - HMPREF1058_RS16770 0.83 +0.1 601,794 - HMPREF1058_RS16770 0.83 -0.0 601,900 + -1.0 601,910 - -0.5 601,919 - +0.1 602,032 + -0.0 602,083 + -2.0 602,089 + -0.9 602,110 + -0.7 602,242 + HMPREF1058_RS16765 0.17 -4.0 602,242 + HMPREF1058_RS16765 0.17 -0.4 602,329 + HMPREF1058_RS16765 0.26 -1.5 602,329 + HMPREF1058_RS16765 0.26 -0.6 602,348 + HMPREF1058_RS16765 0.28 -0.6 602,348 + HMPREF1058_RS16765 0.28 -3.1 602,348 + HMPREF1058_RS16765 0.28 +0.3 602,353 + HMPREF1058_RS16765 0.28 +0.4 602,432 + HMPREF1058_RS16765 0.36 -1.4 602,470 + HMPREF1058_RS16765 0.40 +2.3 602,472 + HMPREF1058_RS16765 0.40 -3.2 602,472 + HMPREF1058_RS16765 0.40 -1.0 602,472 + HMPREF1058_RS16765 0.40 -0.1 602,611 + HMPREF1058_RS16765 0.54 -1.4 602,632 + HMPREF1058_RS16765 0.56 -1.5 602,639 + HMPREF1058_RS16765 0.57 +0.3 602,639 + HMPREF1058_RS16765 0.57 -2.9 602,708 + HMPREF1058_RS16765 0.64 -0.1 602,780 + HMPREF1058_RS16765 0.71 -1.9 602,845 + HMPREF1058_RS16765 0.77 -1.0 602,947 + HMPREF1058_RS16765 0.88 -2.3 603,097 + -1.1 603,168 + -1.6 603,201 + HMPREF1058_RS16760 0.12 -1.0 603,214 + HMPREF1058_RS16760 0.13 -1.6 603,231 + HMPREF1058_RS16760 0.15 +0.3 603,364 + HMPREF1058_RS16760 0.29 -2.6 603,684 + HMPREF1058_RS16760 0.63 -2.0 603,721 + HMPREF1058_RS16760 0.67 -2.4 603,725 + HMPREF1058_RS16760 0.67 -2.3 603,826 + HMPREF1058_RS16760 0.78 -1.9 603,999 + -1.8 604,059 + -0.1
Or see this region's nucleotide sequence