Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16725 and HMPREF1058_RS16720 are separated by 12 nucleotides HMPREF1058_RS16720 and HMPREF1058_RS16715 are separated by 89 nucleotides HMPREF1058_RS16715 and HMPREF1058_RS16710 are separated by 205 nucleotides HMPREF1058_RS16710 and HMPREF1058_RS16705 are separated by 356 nucleotides
HMPREF1058_RS16725: HMPREF1058_RS16725 - dipeptidase, at 609,417 to 610,769
_RS16725
HMPREF1058_RS16720: HMPREF1058_RS16720 - nitroreductase family protein, at 610,782 to 611,411
_RS16720
HMPREF1058_RS16715: HMPREF1058_RS16715 - hypothetical protein, at 611,501 to 611,749
_RS16715
HMPREF1058_RS16710: HMPREF1058_RS16710 - hypothetical protein, at 611,955 to 612,278
_RS16710
HMPREF1058_RS16705: HMPREF1058_RS16705 - xanthine phosphoribosyltransferase, at 612,635 to 613,201
_RS16705
Position (kb) 611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.513 kb on + strand, within HMPREF1058_RS16725 at 610.514 kb on - strand, within HMPREF1058_RS16725 at 610.514 kb on - strand, within HMPREF1058_RS16725 at 610.514 kb on - strand, within HMPREF1058_RS16725 at 610.608 kb on - strand, within HMPREF1058_RS16725 at 610.613 kb on + strand, within HMPREF1058_RS16725 at 610.614 kb on - strand, within HMPREF1058_RS16725 at 610.643 kb on + strand at 610.645 kb on + strand at 610.645 kb on + strand at 610.645 kb on + strand at 610.646 kb on - strand at 610.721 kb on - strand at 610.777 kb on + strand at 610.841 kb on - strand at 610.904 kb on - strand, within HMPREF1058_RS16720 at 610.911 kb on - strand, within HMPREF1058_RS16720 at 610.938 kb on + strand, within HMPREF1058_RS16720 at 610.940 kb on + strand, within HMPREF1058_RS16720 at 610.941 kb on - strand, within HMPREF1058_RS16720 at 610.975 kb on + strand, within HMPREF1058_RS16720 at 611.041 kb on + strand, within HMPREF1058_RS16720 at 611.041 kb on + strand, within HMPREF1058_RS16720 at 611.085 kb on + strand, within HMPREF1058_RS16720 at 611.285 kb on - strand, within HMPREF1058_RS16720 at 611.390 kb on + strand at 611.453 kb on + strand at 611.455 kb on + strand at 611.543 kb on + strand, within HMPREF1058_RS16715 at 611.652 kb on - strand, within HMPREF1058_RS16715 at 611.735 kb on + strand at 611.749 kb on + strand at 611.766 kb on + strand at 611.796 kb on - strand at 611.803 kb on + strand at 611.803 kb on + strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.805 kb on + strand at 611.806 kb on - strand at 611.844 kb on + strand at 611.845 kb on - strand at 611.847 kb on - strand at 611.916 kb on + strand at 611.918 kb on + strand at 611.919 kb on - strand at 611.940 kb on - strand at 611.942 kb on - strand at 611.944 kb on + strand at 611.994 kb on + strand, within HMPREF1058_RS16710 at 612.011 kb on + strand, within HMPREF1058_RS16710 at 612.033 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.039 kb on + strand, within HMPREF1058_RS16710 at 612.039 kb on + strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.042 kb on + strand, within HMPREF1058_RS16710 at 612.043 kb on - strand, within HMPREF1058_RS16710 at 612.043 kb on - strand, within HMPREF1058_RS16710 at 612.047 kb on + strand, within HMPREF1058_RS16710 at 612.047 kb on + strand, within HMPREF1058_RS16710 at 612.048 kb on - strand, within HMPREF1058_RS16710 at 612.159 kb on + strand, within HMPREF1058_RS16710 at 612.159 kb on + strand, within HMPREF1058_RS16710 at 612.192 kb on - strand, within HMPREF1058_RS16710 at 612.267 kb on + strand at 612.344 kb on - strand at 612.365 kb on - strand at 612.391 kb on + strand at 612.423 kb on - strand at 612.442 kb on - strand at 612.452 kb on + strand at 612.452 kb on + strand at 612.458 kb on - strand at 612.569 kb on + strand at 612.626 kb on - strand at 612.699 kb on + strand, within HMPREF1058_RS16705
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 610,513 + HMPREF1058_RS16725 0.81 -0.6 610,513 + HMPREF1058_RS16725 0.81 -0.5 610,513 + HMPREF1058_RS16725 0.81 -1.3 610,513 + HMPREF1058_RS16725 0.81 -0.9 610,513 + HMPREF1058_RS16725 0.81 -1.7 610,514 - HMPREF1058_RS16725 0.81 +0.4 610,514 - HMPREF1058_RS16725 0.81 +2.7 610,514 - HMPREF1058_RS16725 0.81 -2.2 610,608 - HMPREF1058_RS16725 0.88 -0.1 610,613 + HMPREF1058_RS16725 0.88 +0.2 610,614 - HMPREF1058_RS16725 0.88 +1.3 610,643 + +0.3 610,645 + +0.9 610,645 + +1.1 610,645 + -1.9 610,646 - -1.6 610,721 - -0.0 610,777 + +0.5 610,841 - +0.2 610,904 - HMPREF1058_RS16720 0.19 -0.1 610,911 - HMPREF1058_RS16720 0.20 -0.8 610,938 + HMPREF1058_RS16720 0.25 -0.4 610,940 + HMPREF1058_RS16720 0.25 -0.5 610,941 - HMPREF1058_RS16720 0.25 +3.1 610,975 + HMPREF1058_RS16720 0.31 -0.5 611,041 + HMPREF1058_RS16720 0.41 -1.1 611,041 + HMPREF1058_RS16720 0.41 +0.7 611,085 + HMPREF1058_RS16720 0.48 -0.0 611,285 - HMPREF1058_RS16720 0.80 -0.5 611,390 + -2.4 611,453 + +0.5 611,455 + -0.3 611,543 + HMPREF1058_RS16715 0.17 -0.2 611,652 - HMPREF1058_RS16715 0.61 -0.6 611,735 + -0.6 611,749 + -0.0 611,766 + -0.3 611,796 - +1.3 611,803 + -1.1 611,803 + +1.4 611,804 - -0.8 611,804 - -1.8 611,804 - -0.3 611,804 - -1.0 611,805 + -0.9 611,806 - +1.7 611,844 + +2.9 611,845 - +0.7 611,847 - +0.4 611,916 + +0.7 611,918 + +0.6 611,919 - -3.2 611,940 - +0.2 611,942 - +1.7 611,944 + +0.7 611,994 + HMPREF1058_RS16710 0.12 -1.1 612,011 + HMPREF1058_RS16710 0.17 -2.4 612,033 + HMPREF1058_RS16710 0.24 -0.2 612,037 + HMPREF1058_RS16710 0.25 -0.4 612,037 + HMPREF1058_RS16710 0.25 -1.0 612,037 + HMPREF1058_RS16710 0.25 -2.8 612,038 - HMPREF1058_RS16710 0.26 -0.6 612,038 - HMPREF1058_RS16710 0.26 +1.3 612,039 + HMPREF1058_RS16710 0.26 -1.7 612,039 + HMPREF1058_RS16710 0.26 +1.0 612,040 - HMPREF1058_RS16710 0.26 -2.6 612,040 - HMPREF1058_RS16710 0.26 -0.6 612,040 - HMPREF1058_RS16710 0.26 -0.3 612,040 - HMPREF1058_RS16710 0.26 +0.7 612,042 + HMPREF1058_RS16710 0.27 -0.5 612,043 - HMPREF1058_RS16710 0.27 -0.3 612,043 - HMPREF1058_RS16710 0.27 -3.6 612,047 + HMPREF1058_RS16710 0.28 -0.3 612,047 + HMPREF1058_RS16710 0.28 -1.2 612,048 - HMPREF1058_RS16710 0.29 -1.0 612,159 + HMPREF1058_RS16710 0.63 +0.1 612,159 + HMPREF1058_RS16710 0.63 +1.9 612,192 - HMPREF1058_RS16710 0.73 -0.1 612,267 + -1.6 612,344 - -0.7 612,365 - +0.1 612,391 + -0.9 612,423 - -1.6 612,442 - -0.9 612,452 + +0.0 612,452 + -1.1 612,458 - +2.7 612,569 + -3.4 612,626 - +0.9 612,699 + HMPREF1058_RS16705 0.11 -1.2
Or see this region's nucleotide sequence