Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16205 and HMPREF1058_RS16200 are separated by 17 nucleotides HMPREF1058_RS16200 and HMPREF1058_RS16195 are separated by 282 nucleotides HMPREF1058_RS16195 and HMPREF1058_RS21420 are separated by 151 nucleotides
HMPREF1058_RS16205: HMPREF1058_RS16205 - DUF3987 domain-containing protein, at 732,268 to 734,211
_RS16205
HMPREF1058_RS16200: HMPREF1058_RS16200 - DUF4248 domain-containing protein, at 734,229 to 734,453
_RS16200
HMPREF1058_RS16195: HMPREF1058_RS16195 - hypothetical protein, at 734,736 to 735,275
_RS16195
HMPREF1058_RS21420: HMPREF1058_RS21420 - smalltalk protein, at 735,427 to 735,549
_RS21420
Position (kb) 734
735 Strain fitness (log2 ratio) -2
-1
0
1
2 at 733.273 kb on + strand, within HMPREF1058_RS16205 at 733.308 kb on + strand, within HMPREF1058_RS16205 at 733.408 kb on + strand, within HMPREF1058_RS16205 at 733.408 kb on + strand, within HMPREF1058_RS16205 at 733.411 kb on + strand, within HMPREF1058_RS16205 at 733.412 kb on - strand, within HMPREF1058_RS16205 at 733.413 kb on + strand, within HMPREF1058_RS16205 at 733.413 kb on + strand, within HMPREF1058_RS16205 at 733.414 kb on - strand, within HMPREF1058_RS16205 at 733.574 kb on + strand, within HMPREF1058_RS16205 at 733.665 kb on + strand, within HMPREF1058_RS16205 at 734.045 kb on + strand at 734.046 kb on - strand at 734.158 kb on - strand at 734.536 kb on + strand at 734.576 kb on + strand at 734.596 kb on + strand at 734.607 kb on - strand at 734.636 kb on - strand at 734.732 kb on + strand at 734.732 kb on + strand at 734.733 kb on - strand at 734.745 kb on + strand at 734.745 kb on + strand at 734.824 kb on + strand, within HMPREF1058_RS16195 at 734.824 kb on + strand, within HMPREF1058_RS16195 at 734.872 kb on + strand, within HMPREF1058_RS16195 at 734.874 kb on + strand, within HMPREF1058_RS16195 at 735.053 kb on - strand, within HMPREF1058_RS16195 at 735.269 kb on + strand at 735.402 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 remove 733,273 + HMPREF1058_RS16205 0.52 -1.0 733,308 + HMPREF1058_RS16205 0.53 +0.2 733,408 + HMPREF1058_RS16205 0.59 +2.3 733,408 + HMPREF1058_RS16205 0.59 -0.5 733,411 + HMPREF1058_RS16205 0.59 -1.0 733,412 - HMPREF1058_RS16205 0.59 -0.3 733,413 + HMPREF1058_RS16205 0.59 -0.2 733,413 + HMPREF1058_RS16205 0.59 -0.5 733,414 - HMPREF1058_RS16205 0.59 -0.0 733,574 + HMPREF1058_RS16205 0.67 -1.4 733,665 + HMPREF1058_RS16205 0.72 -1.3 734,045 + -1.9 734,046 - -1.4 734,158 - -1.5 734,536 + -0.5 734,576 + -1.4 734,596 + -1.3 734,607 - -1.1 734,636 - -0.7 734,732 + -2.3 734,732 + -0.1 734,733 - -0.9 734,745 + -1.0 734,745 + -0.3 734,824 + HMPREF1058_RS16195 0.16 -1.3 734,824 + HMPREF1058_RS16195 0.16 -2.7 734,872 + HMPREF1058_RS16195 0.25 -1.2 734,874 + HMPREF1058_RS16195 0.26 -2.5 735,053 - HMPREF1058_RS16195 0.59 +0.0 735,269 + -1.2 735,402 - -0.5
Or see this region's nucleotide sequence